Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0013668

Physical Location & Seq

Genomic Coordinates Forward (+)

58967125 .. 58968760

Gene Structure 1636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004392

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGGCTCTTCTTCAATTTCTAAAGGAACCTTCTGTGCTTTTTGCATTCAGTTTTCTCATAGTGTTGCTCAAATTTCTCTTCAAGGATAAGTTGAGGAAAACAAAAATCAAACTCCCACCTAGCCCTCCAAAGCTACCCATCATTGGTAACCTTCACCATGGAAACAACCCTCACCTATCTCTCTGGTCCTTGGCAGAAAAGTTTGGTCCCTTAATTTACTTACAACTTGGTCACATCCCAACAGTGGTGGTGTCATCAGCTAAACTTGCCAAGGAAGTACTGAAAACTCATGATCTTGCACTTTCTAGCCGCCCACAGATCTTTTCAGCCAAACATCTCTTCTATAATTGCACTGATGTTGCCTGCTCCCCTTATGGTGCTTATTGGAGGCACATTCGTAAGATTTGCATACTTGAGCTACTAAGTGCCAAAAGAGTGCAATCATTTAGTCATGTAAGAGTAGAAGAAGTTGCTCGTCTGGCTCATCGGGTTGCAGAGTCCTATCCTGGCACCACTAATCTGAGCAAGTTGCTTGGACTATATGCAAATGATATTCTCTGCCGCGTAGCATTTGGAAGAGATTTCTCAGGTGGTGGAGAGTATGATCAGCATGGTTTCCAAAAGATGCTTGAGGAATTCCAGGAATTGCTTGGCGGATTTTCTATTGGAGATTTCTTCCCTTCTATGGAGTTTCTGCACACCTTAACAGGAATGAAGTCAAGGCTTCAAGAGACATTTGGCAGATTCGATAAACTCTTTGACCAGATGATAGCTGAACATCAAAATCCCAAAAGAGAAAAACAAGAGCACAAGGACCTCGTGGATGTTTTACTGGATATACAGAAAAAAGATTCTGCTGGCATGCGTCTCACCATGGATAATGTCAAGGCTATTATCTTGCTGGACTACATGAAAGCTGTCATCAAAGAGATCTATAGGTTGCATCCAGCAGCACCAGTACTTCTCCCTAGAGAATCCATGGAAGATGTAAACATTGATGGGTATGATATTCCAGCCAAAACAAGAATTTTTGTCAATGCCTGGGCAATAGGGAGAGACCCAGAATCTTGGGAAAACCCAGAAATGTTTGAACCAGAAAGGTTTATAGGTAGCACTATCGATTTCAAGGGGCAGGACTTTGAGCTTATACCTTTTGGGGCTGGTAGAAGAGGTTGTCCAGCGATTACATTCATCACAGCCAGCATTGAGCTTGCTCTAGCACAACTTCTGCATAGCTTTGATTGGGAGCTTCCTGCTGGTACTACAGCTAAAGATTTGGACTTGGCCGAAGCTTTTGGCATCACAATGCATAGGATAGCCAATCTGATTGTTGTAGCCAAACCACGGTTTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

452

Amino Acids

51.07

Weight (kDa)

8.15

Isoelectric Point (pI)

41.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	39 - 299	2.1e-33	Cytochrome P450
p450	PF00067	301 - 434	7.6e-40	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013668)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g06600
malus_domestica	MD14G1168600.v1.1
rosa_chinensis	RchiOBHm_Chr7g0192161
rosa_laevigata	RLG00000004391 RLG00000004392
rosa_multiflora	Rmu_co8367077.1_g000001 Rmu_co8395345.1_g000001 Rmu_sc0002164.1_g000020
rosa_roxburghii	Rroxscaffold_3G00263240 Rroxscaffold_3G00263250
rosa_rugosa	Rorug06G0513300
rosa_samantha	Rh7AG123600 Rh7AG123700 Rh7BG125300 Rh7BG125500 Rh7DG127200 Rh7DG127300
rosa_wichuraiana	Rw7G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	509
AccII	CGCG	1 cut(s)	564
AciI	CCGC	3 cut(s)	310, 562, 654
AcoI	YGGCCR	1 cut(s)	1284
AcsI	RAATTY	3 cut(s)	71, 635, 1026
AfaI	GTAC	3 cut(s)	279, 960, 1261
AfiI	CCNNNNNNNGG	4 cut(s)	143, 244, 685, 1344
AgsI	TTSAA	5 cut(s)	14, 82, 728, 1091, 1126
AjnI	CCWGG	3 cut(s)	505, 639, 1040
AjuI	GAANNNNNNNTTGG	2 cut(s)	323, 355
Alw21I	GWGCWC	1 cut(s)	810
Alw26I	GTCTC	3 cut(s)	725, 872, 1050
AoxI	GGCC	1 cut(s)	1284
ApeKI	GCWGC	1 cut(s)	950
ApoI	RAATTY	3 cut(s)	71, 635, 1026
AspS9I	GGNCC	3 cut(s)	186, 206, 814
AsuHPI	GGTGA	3 cut(s)	146, 164, 862
AvaII	GGWCC	3 cut(s)	186, 206, 814
BanI	GGYRCC	1 cut(s)	509
BauI	CACGAG	1 cut(s)	818
Bbv12I	GWGCWC	1 cut(s)	810
BbvI	GCAGC	1 cut(s)	962
BccI	CCATC	2 cut(s)	146, 992
BciT130I	CCWGG	3 cut(s)	507, 641, 1042
BclI	TGATCA	1 cut(s)	604
BcoDI	GTCTC	3 cut(s)	725, 872, 1050
BfaI	CTAG	4 cut(s)	120, 306, 969, 1217
BfmI	CTRYAG	2 cut(s)	934, 1263
BglII	AGATCT	2 cut(s)	318, 930
BisI	GCNGC	3 cut(s)	310, 562, 951
BlsI	GCNGC	3 cut(s)	311, 563, 952
BmcAI	AGTACT	2 cut(s)	279, 960
Bme1390I	CCNGG	3 cut(s)	507, 641, 1042
Bme18I	GGWCC	3 cut(s)	186, 206, 814
BmgT120I	GGNCC	3 cut(s)	186, 206, 814
BmiI	GGNNCC	3 cut(s)	27, 208, 511
BmrFI	CCNGG	3 cut(s)	507, 641, 1042
BmsI	GCATC	3 cut(s)	615, 952, 1308
BpuEI	CTTGAG	2 cut(s)	434, 650
Bsa29I	ATCGAT	1 cut(s)	1119
BsaI	GGTCTC	1 cut(s)	1050
BsaJI	CCNNGG	7 cut(s)	157, 189, 270, 873, 978, 1041, 1343
Bsc4I	CCNNNNNNNGG	4 cut(s)	143, 244, 685, 1344
Bse1I	ACTGG	2 cut(s)	837, 956
BseBI	CCWGG	3 cut(s)	507, 641, 1042
BseCI	ATCGAT	1 cut(s)	1119
BseDI	CCNNGG	7 cut(s)	157, 189, 270, 873, 978, 1041, 1343
BseGI	GGATG	3 cut(s)	234, 829, 943
BseLI	CCNNNNNNNGG	4 cut(s)	143, 244, 685, 1344
BseMII	CTCAG	2 cut(s)	512, 600
BseNI	ACTGG	2 cut(s)	837, 956
BseXI	GCAGC	1 cut(s)	962
BsgI	GTGCAG	1 cut(s)	680
Bsh1236I	CGCG	1 cut(s)	564
BshFI	GGCC	1 cut(s)	1286
BshNI	GGYRCC	1 cut(s)	509
BshVI	ATCGAT	1 cut(s)	1119
BsiHKAI	GWGCWC	1 cut(s)	810
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	4 cut(s)	143, 244, 685, 1344
BsmAI	GTCTC	3 cut(s)	725, 872, 1050
BsmBI	CGTCTC	1 cut(s)	872
BsmFI	GGGAC	1 cut(s)	192
BsmI	GAATGC	1 cut(s)	44
BsnI	GGCC	1 cut(s)	1286
Bso31I	GGTCTC	1 cut(s)	1050
Bsp1286I	GDGCHC	1 cut(s)	810
Bsp143I	GATC	4 cut(s)	292, 318, 604, 930
Bsp19I	CCATGG	3 cut(s)	157, 873, 978
BspACI	CCGC	3 cut(s)	310, 562, 654
BspANI	GGCC	1 cut(s)	1286
BspCNI	CTCAG	2 cut(s)	513, 599
BspDI	ATCGAT	1 cut(s)	1119
BspFNI	CGCG	1 cut(s)	564
BspHI	TCATGA	1 cut(s)	289
BspLI	GGNNCC	3 cut(s)	27, 208, 511
BspQI	GCTCTTC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	509
BspTNI	GGTCTC	1 cut(s)	1050
BsrI	ACTGG	2 cut(s)	837, 956
BssECI	CCNNGG	7 cut(s)	157, 189, 270, 873, 978, 1041, 1343
BssMI	GATC	4 cut(s)	292, 318, 604, 930
BssSI	CACGAG	1 cut(s)	818
BssT1I	CCWWGG	5 cut(s)	157, 189, 270, 873, 978
Bst2BI	CACGAG	1 cut(s)	818
Bst2UI	CCWGG	3 cut(s)	507, 641, 1042
Bst4CI	ACNGT	2 cut(s)	244, 1347
Bst6I	CTCTTC	5 cut(s)	12, 83, 344, 571, 1162
BstC8I	GCNNGC	5 cut(s)	364, 859, 863, 1201, 1212
BstDEI	CTNAG	3 cut(s)	422, 521, 586
BstDSI	CCRYGG	4 cut(s)	157, 873, 978, 1343
BstEII	GGTNACC	1 cut(s)	146
BstF5I	GGATG	3 cut(s)	234, 829, 943
BstFNI	CGCG	1 cut(s)	564
BstKTI	GATC	4 cut(s)	295, 321, 607, 933
BstMAI	GTCTC	3 cut(s)	725, 872, 1050
BstMBI	GATC	4 cut(s)	292, 318, 604, 930
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 479
BstNI	CCWGG	3 cut(s)	507, 641, 1042
BstNSI	RCATGY	1 cut(s)	865
BstPI	GGTNACC	1 cut(s)	146
BstSCI	CCNGG	3 cut(s)	505, 639, 1040
BstSFI	CTRYAG	2 cut(s)	934, 1263
BstUI	CGCG	1 cut(s)	564
BstV1I	GCAGC	1 cut(s)	962
BstX2I	RGATCY	2 cut(s)	318, 930
BstXI	CCANNNNNNTGG	1 cut(s)	1068
BstYI	RGATCY	2 cut(s)	318, 930
Bsu15I	ATCGAT	1 cut(s)	1119
BsuRI	GGCC	1 cut(s)	1286
BsuTUI	ATCGAT	1 cut(s)	1119
BtgI	CCRYGG	4 cut(s)	157, 873, 978, 1343
BtsCI	GGATG	3 cut(s)	234, 829, 943
BtsIMutI	CAGTG	2 cut(s)	249, 351
Cac8I	GCNNGC	5 cut(s)	364, 859, 863, 1201, 1212
CciI	TCATGA	1 cut(s)	289
Cfr13I	GGNCC	3 cut(s)	186, 206, 814
ClaI	ATCGAT	1 cut(s)	1119
CseI	GACGC	1 cut(s)	854
Csp6I	GTAC	3 cut(s)	278, 959, 1260
CspCI	CAANNNNNGTGG	2 cut(s)	228, 263
CviAII	CATG	8 cut(s)	158, 290, 452, 611, 862, 874, 910, 979
CviQI	GTAC	3 cut(s)	278, 959, 1260
DdeI	CTNAG	3 cut(s)	422, 521, 586
DpnI	GATC	4 cut(s)	294, 320, 606, 932
DpnII	GATC	4 cut(s)	292, 318, 604, 930
EaeI	YGGCCR	1 cut(s)	1284
Eam1104I	CTCTTC	5 cut(s)	12, 83, 344, 571, 1162
EarI	CTCTTC	5 cut(s)	12, 83, 344, 571, 1162
EciI	GGCGGA	1 cut(s)	669
Eco130I	CCWWGG	5 cut(s)	157, 189, 270, 873, 978
Eco31I	GGTCTC	1 cut(s)	1050
Eco47I	GGWCC	3 cut(s)	186, 206, 814
Eco91I	GGTNACC	1 cut(s)	146
EcoO109I	RGGNCCY	1 cut(s)	814
EcoO65I	GGTNACC	1 cut(s)	146
EcoRI	GAATTC	1 cut(s)	635
EcoRII	CCWGG	3 cut(s)	505, 639, 1040
EcoT14I	CCWWGG	5 cut(s)	157, 189, 270, 873, 978
EcoT22I	ATGCAT	1 cut(s)	1311
ErhI	CCWWGG	5 cut(s)	157, 189, 270, 873, 978
Esp3I	CGTCTC	1 cut(s)	872
FaeI	CATG	8 cut(s)	161, 293, 455, 614, 865, 877, 913, 982
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	8 cut(s)	157, 289, 451, 610, 861, 873, 909, 978
FbaI	TGATCA	1 cut(s)	604
Fnu4HI	GCNGC	3 cut(s)	310, 562, 951
FokI	GGATG	3 cut(s)	221, 836, 930
Fsp4HI	GCNGC	3 cut(s)	310, 562, 951
FspBI	CTAG	4 cut(s)	120, 306, 969, 1217
GluI	GCNGC	3 cut(s)	310, 562, 951
HaeIII	GGCC	1 cut(s)	1286
HgaI	GACGC	1 cut(s)	854
Hin1II	CATG	8 cut(s)	161, 293, 455, 614, 865, 877, 913, 982
HindIII	AAGCTT	1 cut(s)	1290
HinfI	GANTC	5 cut(s)	497, 744, 851, 974, 1064
HphI	GGTGA	3 cut(s)	146, 164, 862
Hpy166II	GTNNAC	1 cut(s)	991
Hpy188I	TCNGA	2 cut(s)	522, 1326
Hpy188III	TCNNGA	3 cut(s)	290, 728, 1353
Hpy8I	GTNNAC	1 cut(s)	991
HpyAV	CCTTC	3 cut(s)	39, 161, 690
HpyCH4III	ACNGT	2 cut(s)	244, 1347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 479
HpyF3I	CTNAG	3 cut(s)	422, 521, 586
Hsp92II	CATG	8 cut(s)	161, 293, 455, 614, 865, 877, 913, 982
Ksp22I	TGATCA	1 cut(s)	604
Kzo9I	GATC	4 cut(s)	292, 318, 604, 930
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	2 cut(s)	371, 1246
Lsp1109I	GCAGC	1 cut(s)	962
LweI	GCATC	3 cut(s)	615, 952, 1308
MaeI	CTAG	4 cut(s)	120, 306, 969, 1217
MaeIII	GTNAC	2 cut(s)	146, 230
MalI	GATC	4 cut(s)	294, 320, 606, 932
MboI	GATC	4 cut(s)	292, 318, 604, 930
MboII	GAAGA	7 cut(s)	70, 331, 476, 588, 667, 995, 1179
MflI	RGATCY	2 cut(s)	318, 930
MhlI	GDGCHC	1 cut(s)	810
MluCI	AATT	7 cut(s)	14, 71, 213, 346, 635, 644, 1026
MlyI	GAGTC	1 cut(s)	506
MnlI	CCTC	7 cut(s)	87, 135, 180, 381, 625, 827, 1163
Mph1103I	ATGCAT	1 cut(s)	1311
MseI	TTAA	2 cut(s)	212, 704
MslI	CAYNNNNRTG	1 cut(s)	1304
MspR9I	CCNGG	3 cut(s)	507, 641, 1042
Mva1269I	GAATGC	1 cut(s)	44
MvaI	CCWGG	3 cut(s)	507, 641, 1042
MvnI	CGCG	1 cut(s)	564
MwoI	GCNNNNNNNGC	2 cut(s)	266, 479
NcoI	CCATGG	3 cut(s)	157, 873, 978
NdeII	GATC	4 cut(s)	292, 318, 604, 930
NlaIII	CATG	8 cut(s)	161, 293, 455, 614, 865, 877, 913, 982
NlaIV	GGNNCC	3 cut(s)	27, 208, 511
NmuCI	GTSAC	1 cut(s)	230
NsiI	ATGCAT	1 cut(s)	1311
NspI	RCATGY	1 cut(s)	865
PaeI	GCATGC	1 cut(s)	865
PagI	TCATGA	1 cut(s)	289
PciSI	GCTCTTC	1 cut(s)	12
PctI	GAATGC	1 cut(s)	44
PfeI	GAWTC	4 cut(s)	744, 851, 974, 1064
PfoI	TCCNGGA	1 cut(s)	639
PkrI	GCNGC	3 cut(s)	311, 563, 952
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
PpuMI	RGGWCCY	1 cut(s)	814
Psp5II	RGGWCCY	1 cut(s)	814
Psp6I	CCWGG	3 cut(s)	505, 639, 1040
PspEI	GGTNACC	1 cut(s)	146
PspGI	CCWGG	3 cut(s)	505, 639, 1040
PspN4I	GGNNCC	3 cut(s)	27, 208, 511
PspPI	GGNCC	3 cut(s)	186, 206, 814
PspPPI	RGGWCCY	1 cut(s)	814
PsuI	RGATCY	2 cut(s)	318, 930
RsaI	GTAC	3 cut(s)	279, 960, 1261
RsaNI	GTAC	3 cut(s)	278, 959, 1260
RseI	CAYNNNNRTG	1 cut(s)	1304
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	212, 704
SatI	GCNGC	3 cut(s)	310, 562, 951
Sau3AI	GATC	4 cut(s)	292, 318, 604, 930
Sau96I	GGNCC	3 cut(s)	186, 206, 814
ScaI	AGTACT	2 cut(s)	279, 960
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	3 cut(s)	507, 641, 1042
SduI	GDGCHC	1 cut(s)	810
SfaNI	GCATC	3 cut(s)	615, 952, 1308
SfcI	CTRYAG	2 cut(s)	934, 1263
SinI	GGWCC	3 cut(s)	186, 206, 814
SmiMI	CAYNNNNRTG	1 cut(s)	1304
SmlI	CTYRAG	2 cut(s)	413, 629
SmoI	CTYRAG	2 cut(s)	413, 629
SphI	GCATGC	1 cut(s)	865
Sse9I	AATT	7 cut(s)	14, 71, 213, 346, 635, 644, 1026
SsiI	CCGC	3 cut(s)	310, 562, 654
SspMI	CTAG	4 cut(s)	120, 306, 969, 1217
StyD4I	CCNGG	3 cut(s)	505, 639, 1040
StyI	CCWWGG	5 cut(s)	157, 189, 270, 873, 978
TaaI	ACNGT	2 cut(s)	244, 1347
TaqI	TCGA	2 cut(s)	747, 1119
TasI	AATT	7 cut(s)	14, 71, 213, 346, 635, 644, 1026
TatI	WGTACW	2 cut(s)	277, 958
TauI	GCSGC	2 cut(s)	312, 564
TfiI	GAWTC	4 cut(s)	744, 851, 974, 1064
Tru1I	TTAA	2 cut(s)	212, 704
Tru9I	TTAA	2 cut(s)	212, 704
TscAI	CASTG	2 cut(s)	249, 358
TseFI	GTSAC	1 cut(s)	230
TseI	GCWGC	1 cut(s)	950
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	3 cut(s)	728, 926, 1180
TspRI	CASTG	2 cut(s)	249, 358
VpaK11BI	GGWCC	3 cut(s)	186, 206, 814
XapI	RAATTY	3 cut(s)	71, 635, 1026
XceI	RCATGY	1 cut(s)	865
XcmI	CCANNNNNNNNNTGG	1 cut(s)	647
XspI	CTAG	4 cut(s)	120, 306, 969, 1217
ZrmI	AGTACT	2 cut(s)	279, 960
Zsp2I	ATGCAT	1 cut(s)	1311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.