Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0011462

Physical Location & Seq

Genomic Coordinates Forward (+)

4175154 .. 4182055

Gene Structure 6902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g07090.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4479 bp

ATGGCAGCACCTCCAGAGCAGCCCCCGGAGGTCCTCCCCTGGCTGCGAGCCCTCCCCGTAGCTCCCGAGTACCACCCCACCTGGGCCGAGTTCCAAGATCCGATTGCCTACATTTTCAAGATCGAGAAAGAAGCTTCCCAGTACGGCATCTGCAAAATCGTGCCACCTGTCCCTCCGGCACCGAAGAAGACCGCAATTGCTAACCTCAACAAGAGTCTGATACTACGTAACGGGCCGGTAACCGGTAAAGGCCCGAAAGCCCAGCCCACATTCACCACCCGGCAGCAGCAGATCGGGTTCTGCCCCCGGAAGGCCCGCCCGGTGCAGAGACCCGTCTGGCAGAGCGGCGAGCATTACACTTTCAGTCAGTTCGAGGCAAAAGCGAAGAGCTTTGAGAAGAGCTACTTGAAGAAGCAGAGGAAGAAGGGAGGGCTGAGTGCTTTGGATATCGAAACACTGTACTGGAAGGCCACTGTGGACAAGCCGTTTTCGGTTGAGTACGCCAATGACATGCCCGGGTCGGCATTCGTGCCGCTGAGCTCGAAGAAGAGTGGGGGGAGTACTAGCAGGGAGGCAGGGGATGGGGTTACGCTTGGGGAGACTGCGTGGAATATGAGAGGGGTTTCGAGGTCGAGAGGATCTTTGTTGAGGTTTATGAAGGAGGAGATTCCCGGGGTTACGTGTCCCATGGTGTATGTGGCTATGATGTTCAGCTGGTTTGCTTGGCACGTGGAGGATCATGACTTGCATAGCTTGAATTATTTGCACATGGGGGCCGGGAAGACTTGGTATGGCGTGCCCAGGGAGGCTGCGGTGGCGTTTGAGGAGGTGGTCAGGGTTCAGGGGTATGGAGGAGAGATCAATCCTCTTGTTACATTTGCGACTCTTGGTGAGAAGACCACCGTGATGTCACCTGAAGTATTTATCAGTTCAGGGATTCCATGCTGCAGGTTAGTGCAAAATGCTGGGGAATTTGTTGTCACTTTTCCAAGAGCGTATCACACTGGATTCAGTCATGGATTTAATTGTGGGGAGGCAGCCAACATTGCAACTCCTGAGTGGTTGAGGGTTGCCAACGATGCTGCTGTCCGACGAGCTTCAATCAATTATCCTCCTATGGTGTCTCATTTTCAGTTACTTTATGATCTTGCTCTAGCATTATGTTCAAGAACACCTGTGCACAGTAGTGCTGAACCTCGAAGTTCTCGACTAAAAGATAAGAAAAAGGGTGAAGGAGAAACAGTAGTTAAGGGTTTATTTGTGAAGAATGTCATTCAGAACAATGAGCTGCTTCATGTTCTTGGAAAAGGGTCGTCAATCGTACTTCTACCACAGAGTTCTTCAGACATTTCTGTTTGTTCAAAATTACGTGTTGGTTCACAGTTGAGAGTGAACCCGGATGATCTCATTATAGACGGAAATCGGGGAATCAAGCAGGTTTCGGTGAAAGGAAAACTTGCATCTTTATGTGAAAGTAGCCGACATCTCTCATTAAATGGAAATGACAGTGCAGCTACTCCTTCTAAGATGTTGAACATGAGCGCTAAAAGAGAAAGTAATGTCGAAGGGGAAGGGTTGTCAGATCAGAGACTGTTTTCTTGTGTTACATGTGGGATTTTGAGCTTTTCATGTGTTGCTATCATTCAACCAAGAGAAGCAGCAGCCAGATATCTCATGTCAGCAGATTGTAGTTTTTTCAATGATTGGGCTGTTGATTGTGAGCCAATCCAGGGTGCAAATGGAGATCCAAATAGTTCTAAGAAGGGTCCCTGTACAGAAACAGGATTGAAGCAAAAAAGTGCCCCTGATAGTTTATATGATGCACCCTTTCAGTCTGCTGATAATCAAAATCAGATCACAGATCCATCCAATGAAGTTGATTCAAATACTGAAAACCAGAGAGATACTAATGCACTTGGGCTATTAGCTTTGACCTATGGAGTTTCATCTGACTCGGAGGAAGATCAGGCTAACCAAGATGTTCCTGTTTGTGGTGACAAATCAAACTTGTCTGACTGTTCTTTGGAAGGTAGATATGAGTATCAAAGTGCTAGTCCTCCTTTGAGAGCCTCTTATGGTGGTACAGCTGGGGTTCGCAGTCCCACTTCACCAGGATTTGATTGTGGTATTGGACTCCCAACAATTGATGGTAATGGACTCCCAACTATTGATGTCTATGTGGAAAATAGACCTGAAGCAACTAATTTCAAGGATAAGGGTCATCAATATTCTGTTGATCTTGACACCAATAATCTTGCTTTGACAAAGACAAATGGTTTGGTGGGTACATCTATAGATCCAATGAAGGTTTCATATTCTGGCTCCCCAGATGCATTTGACGTTCAACCAACTGGATTTGGTCAGGTCACTTTACGGAAAGATAGCACAGGTACATCATTTGCTCCAGGATTTGACCATGATTCTTCTAGAATGCATGTGTTCTGCCTTGAGCATGCCGTAGAGGTTGAGCAGCAGCTCCGTTCATTTGGCGGCGCCCATATATTACTCCTTTGTCATCCAGACTATCCGCGGATAGTGGATGAAGCAAAAGAAATAGCGGAAGAACTGGGAGTAAATTATCCCTGGAATGATTTGGTATTCAGGAATGCCACCAGGGCGGATGAGCAGAGGATTCAGTCAGCTCTGGATAGTGAGGAAGCCATTGCTGGGAATGGAGACTGGGCTGTAAAGATGGGGATCAATCTCTTCTACAGTGCCAGCCTTAGCCGCTCTCATCTTTATAGTAAGCAGATGCCGTACAATTCTGTTATATACAATGCATTTGGTCGTAGTTCTCCAGCAACCTCCCCTGCTGGACCTGAGGTCTGTGGGAGGAGGCCCGCCAAACAGAAAAAGGTGGTGGTAGGGAAATGGTGCGGTAAAGTTTGGATGTCAAATCAAGTTCATCCCTTCCTAATAAAAAGGGAACATGAAGAGAAAAAGGTGGAGCAAGAACGGAGGAGGTTCCAGGAATCGCCAATTCCAGATGAGAAGCTTCATGGAAACACAGAAAGCACACACAAAACTGAGAAAACTGTGGTGACGAAACAGTATTCTAGGAAGAGGAAAATGACCGTAGATGGTGAGACAACCAAGAAAGCAAAACGTACTGATGCAGTTTCTGCTCAGTCAGTAGATGATGACTCCCATCTACAGCAGATGAGGTTTCTCAAGAACAAGCAAGGCAAACATATAGAGAGTGGTCCAACCAAGAAATCAAAAATTGAGAAAGAAGATGCAGTGTCGAGTGATTCAATGGAAGATGATTTCCGTCAGCAAAACAGGAGGACTCTTCGAAGCAAGCAAGCCAAGCATTCTGTGGGGGATGATGATGTTTCAGATGATTCAATGGGAGTTGATTCTCAACAGCAGCAGACGCGGATTGCTAAAAGTAAGCAAGCAAAGCACAGTGCCAAAGATTTCTCTGTGGTGTCAGATGATTCAGTTGGAGTTGATTCTGATCATCAGCAGAAGCGGGTTGCTGAAAGTAATACCAGAGAGTTCTCTGCGGTTTCAGATGATTCGCTTGATGAAAGTATCCATCAGTTGCATAGGAGGTCACTTAGACGCAACAAAGGTAAAAGCATTGGGAGAGAAAATTTCACCTCACAAAATCTTTATGGGGTCAGTTCTCGCCAGAAACAAAAGAAAACTTCTAAAAGCAAGCAGGCCAAAATTGTTGAGAGAGAAGAAGCAGCTCTGGATGAAACAACAGACGATAATGCTGCACTGCAGCATAAGATTGTCCGAGGCAAGCAGATAAAACCAGAGACCCTTCAGCAAATGAAACGGGAAACCCCTCACCGTGTGAGACAAGGGTCCCGCCGTTTACAAGAAAGCCAGCAACAGACTCCCAGGATCCGAAACACCACTGATGTCCATGCTGAGGAACCAGAAGGTGGGCCTAGCACGCGACTTAGAAAAAGACCTCCAAAAGAGCAGCCAGAAACCAGTAGGAAAAAGGCAAAAGTGCAGCCAGAAACTGGAAGGAAAAAGGCAAAAGAGCAGCAACAAACCGGTAGGATCAAGGTAAACACTGCTTCAGCTGTGAAGACAAAGAATGCTTCAGCTCGAAAGACAAAGAACGCTTCAGGTGCGAGGGTAGAGGAAGCAGAATTCGTGTGTGATATTGAGGGGTGCACCATGAGTTTTGGCACAAAACACGAGCTTAATCTCCACAAGAAAAACGTGTGTCCAGTCAAGGGGTGTGGAAAGAAATTCTTCTCGCACAAGTATCTGGTGCAACATCGTCGAGTGCACGAGGATGACCGCCCCCTTCGGTGCCCTTGGAAGGGATGCAAAATGACATTCAAGTGGGCATGGGCTCGGACGGAGCACATCAGGGTACACACAGGTGCTCGTCCCTACGTCTGTGCTGAGCCAGGTTGTGGGCAGACCTTCCGGTTTGTGTCAGATTTTAGCCGTCATAAGCGGAAGACTGGGCATTCAGTAAAGAAAGGTAAAGGGCGATCACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008214 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009791 GO:0009826 GO:0009892 GO:0009987 GO:0010033 GO:0010228 GO:0010605 GO:0010639 GO:0014070 GO:0016043 GO:0016049 GO:0016569 GO:0016570 GO:0016577 GO:0019222 GO:0019538 GO:0022414 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032989 GO:0033043 GO:0033044 GO:0033169 GO:0033993 GO:0035065 GO:0035067 GO:0036211 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051276 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0099402 GO:1901564 GO:1901700 GO:1901983 GO:1901984 GO:1902275 GO:1905268 GO:2000756 GO:2000757 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JmjC JmjN zf-C2H2

Protein Analysis

1493

Amino Acids

165.63

Weight (kDa)

9.19

Isoelectric Point (pI)

49.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48430 AT3G48430
fragaria_vesca	FvH4_5g07090 FvH4_5g07090 FvH4_5g07090
malus_domestica	MD06G1159300.v1.1 MD14G1165600.v1.1
prunus_persica	Prupe.5G159200_v2.0.a1
pyrus_communis	pycom06g14210 pycom14g13810
rosa_chinensis	RchiOBHm_Chr7g0191461
rosa_laevigata	RLG00000004448
rosa_multiflora	Rmu_sc0002661.1_g000009
rosa_roxburghii	Rroxscaffold_157G00438400 Rroxscaffold_3G00263790
rosa_rugosa	Rorug06G0510400
rosa_samantha	Rh7AG118500 Rh7BG120500 Rh7CG123300 Rh7DG121400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	939, 1426
AccB1I	GGYRCC	3 cut(s)	178, 2492, 4281
AccB7I	CCANNNNNTGG	3 cut(s)	3899, 3983, 4388
AccBSI	CCGCTC	2 cut(s)	345, 2730
AccII	CGCG	3 cut(s)	2530, 3379, 3913
AcsI	RAATTY	4 cut(s)	971, 3598, 4115, 4217
AcuI	CTGAAG	7 cut(s)	936, 1326, 2214, 3761, 4026, 4050, 4074
AcvI	CACGTG	1 cut(s)	730
AcyI	GRCGYC	1 cut(s)	2493
AdeI	CACNNNGTG	1 cut(s)	3808
AfeI	AGCGCT	1 cut(s)	1543
AflIII	ACRYGT	4 cut(s)	680, 1369, 1607, 4188
AgeI	ACCGGT	2 cut(s)	242, 4016
AhdI	GACNNNNNGTC	1 cut(s)	2822
AjuI	GAANNNNNNNTTGG	2 cut(s)	2293, 2325
AleI	CACNNNNGTG	2 cut(s)	1185, 4353
Alw21I	GWGCWC	6 cut(s)	542, 1182, 4142, 4260, 4338, 4360
Alw26I	GTCTC	8 cut(s)	322, 593, 1128, 1582, 2670, 3080, 3764, 3805
Alw44I	GTGCAC	3 cut(s)	1178, 4138, 4256
AlwNI	CAGNNNCTG	3 cut(s)	1591, 3122, 3983
Ama87I	CYCGRG	3 cut(s)	65, 515, 671
Aor51HI	AGCGCT	1 cut(s)	1543
AoxI	GGCC	9 cut(s)	84, 233, 250, 312, 468, 774, 2837, 3669, 3902
ApaLI	GTGCAC	3 cut(s)	1178, 4138, 4256
ApoI	RAATTY	4 cut(s)	971, 3598, 4115, 4217
ArsI	GACNNNNNNTTYG	4 cut(s)	2038, 2070, 2260, 2292
AsiGI	ACCGGT	2 cut(s)	242, 4016
Asp700I	GAANNNNTTC	1 cut(s)	4220
AspLEI	GCGC	2 cut(s)	1544, 2495
AsuII	TTCGAA	1 cut(s)	3295
AvaI	CYCGRG	3 cut(s)	65, 515, 671
AvaII	GGWCC	5 cut(s)	31, 1766, 2816, 3203, 3819
AxyI	CCTNAGG	1 cut(s)	2820
BaeGI	GKGCMC	6 cut(s)	801, 1182, 1804, 4142, 4260, 4286
BamHI	GGATCC	1 cut(s)	3858
BanI	GGYRCC	3 cut(s)	178, 2492, 4281
BanII	GRGCYC	3 cut(s)	52, 542, 4327
BauI	CACGAG	2 cut(s)	4163, 4259
BbrPI	CACGTG	1 cut(s)	730
BbsI	GAAGAC	5 cut(s)	194, 788, 902, 4058, 4442
Bbv12I	GWGCWC	6 cut(s)	542, 1182, 4142, 4260, 4338, 4360
BbvCI	CCTCAGC	1 cut(s)	3885
BccI	CCATC	7 cut(s)	575, 1873, 2141, 2686, 3074, 3156, 3549
BceAI	ACGGC	6 cut(s)	160, 469, 2441, 2740, 3810, 4407
BcgI	CGANNNNNNTGC	4 cut(s)	3707, 3741, 4232, 4266
BciVI	GTATCC	1 cut(s)	3548
BclI	TGATCA	1 cut(s)	3460
BcoDI	GTCTC	8 cut(s)	322, 593, 1128, 1582, 2670, 3080, 3764, 3805
BfaI	CTAG	6 cut(s)	564, 1154, 2052, 2427, 3057, 3906
BfmI	CTRYAG	5 cut(s)	946, 2292, 2710, 3152, 3731
BfoI	RGCGCY	2 cut(s)	1545, 2496
BfuAI	ACCTGC	2 cut(s)	939, 1426
BfuI	GTATCC	1 cut(s)	3548
BglI	GCCNNNNNGGC	1 cut(s)	2615
BlpI	GCTNAGC	2 cut(s)	536, 4377
BmcAI	AGTACT	1 cut(s)	562
Bme18I	GGWCC	5 cut(s)	31, 1766, 2816, 3203, 3819
BmeRI	GACNNNNNGTC	1 cut(s)	2822
BmeT110I	CYCGRG	3 cut(s)	65, 515, 671
BmrI	ACTGGG	4 cut(s)	133, 2576, 2689, 4449
BmsI	GCATC	9 cut(s)	156, 1069, 1469, 1810, 2320, 2742, 3103, 3226, 4286
BmuI	ACTGGG	4 cut(s)	133, 2576, 2689, 4449
BoxI	GACNNNNGTC	1 cut(s)	3817
BpiI	GAAGAC	5 cut(s)	194, 788, 902, 4058, 4442
BpmI	CTGGAG	2 cut(s)	2388, 2781
Bpu10I	CCTNAGC	2 cut(s)	2723, 3885
Bpu1102I	GCTNAGC	2 cut(s)	536, 4377
Bpu14I	TTCGAA	1 cut(s)	3295
BpuEI	CTTGAG	2 cut(s)	2468, 3155
BsaAI	YACGTR	4 cut(s)	227, 681, 730, 1370
BsaBI	GATNNNNATC	2 cut(s)	2696, 3459
BsaHI	GRCGYC	1 cut(s)	2493
BsaI	GGTCTC	2 cut(s)	322, 3764
BsaWI	WCCGGW	3 cut(s)	242, 4016, 4401
BsaXI	ACNNNNNCTCC	4 cut(s)	590, 620, 1227, 1257
Bse118I	RCCGGY	3 cut(s)	235, 242, 4016
Bse21I	CCTNAGG	1 cut(s)	2820
Bse3DI	GCAATG	2 cut(s)	1044, 2661
Bse8I	GATNNNNATC	2 cut(s)	2696, 3459
BseJI	GATNNNNATC	2 cut(s)	2696, 3459
BseMI	GCAATG	2 cut(s)	1044, 2661
BseMII	CTCAG	8 cut(s)	425, 527, 1047, 2811, 3018, 3140, 3876, 4368
BseRI	GAGGAG	5 cut(s)	677, 839, 867, 2848, 2974
BseSI	GKGCMC	6 cut(s)	801, 1182, 1804, 4142, 4260, 4286
BseYI	CCCAGC	4 cut(s)	261, 965, 2087, 2666
BsgI	GTGCAG	4 cut(s)	344, 1530, 3711, 3992
Bsh1236I	CGCG	3 cut(s)	2530, 3379, 3913
BshFI	GGCC	9 cut(s)	86, 235, 252, 314, 470, 776, 2839, 3671, 3904
BshNI	GGYRCC	3 cut(s)	178, 2492, 4281
BshTI	ACCGGT	2 cut(s)	242, 4016
BsiHKAI	GWGCWC	6 cut(s)	542, 1182, 4142, 4260, 4338, 4360
BsiHKCI	CYCGRG	3 cut(s)	65, 515, 671
BslFI	GGGAC	6 cut(s)	155, 669, 1752, 2085, 3805, 4347
BsmAI	GTCTC	8 cut(s)	322, 593, 1128, 1582, 2670, 3080, 3764, 3805
BsmFI	GGGAC	6 cut(s)	155, 669, 1752, 2085, 3805, 4347
BsmI	GAATGC	6 cut(s)	524, 2436, 2611, 3313, 4066, 4444
BsnI	GGCC	9 cut(s)	86, 235, 252, 314, 470, 776, 2839, 3671, 3904
Bso31I	GGTCTC	2 cut(s)	322, 3764
BsoBI	CYCGRG	3 cut(s)	65, 515, 671
Bsp119I	TTCGAA	1 cut(s)	3295
Bsp1407I	TGTACA	1 cut(s)	1772
Bsp1720I	GCTNAGC	2 cut(s)	536, 4377
Bsp19I	CCATGG	1 cut(s)	687
BspANI	GGCC	9 cut(s)	86, 235, 252, 314, 470, 776, 2839, 3671, 3904
BspCNI	CTCAG	8 cut(s)	426, 528, 1048, 2812, 3019, 3139, 3877, 4369
BspFNI	CGCG	3 cut(s)	2530, 3379, 3913
BspHI	TCATGA	1 cut(s)	739
BspMAI	CTGCAG	2 cut(s)	950, 3735
BspMI	ACCTGC	2 cut(s)	939, 1426
BspQI	GCTCTTC	2 cut(s)	380, 392
BspT104I	TTCGAA	1 cut(s)	3295
BspT107I	GGYRCC	3 cut(s)	178, 2492, 4281
BspTNI	GGTCTC	2 cut(s)	322, 3764
BsrBI	CCGCTC	2 cut(s)	345, 2730
BsrDI	GCAATG	2 cut(s)	1044, 2661
BsrFI	RCCGGY	3 cut(s)	235, 242, 4016
BsrGI	TGTACA	1 cut(s)	1772
BssAI	RCCGGY	3 cut(s)	235, 242, 4016
BssNI	GRCGYC	1 cut(s)	2493
BssSI	CACGAG	2 cut(s)	4163, 4259
BssT1I	CCWWGG	2 cut(s)	687, 4286
Bst2BI	CACGAG	2 cut(s)	4163, 4259
Bst6I	CTCTTC	7 cut(s)	380, 392, 542, 2711, 2928, 3056, 3297
BstACI	GRCGYC	1 cut(s)	2493
BstAPI	GCANNNNNTGC	1 cut(s)	3122
BstAUI	TGTACA	1 cut(s)	1772
BstBAI	YACGTR	4 cut(s)	227, 681, 730, 1370
BstBI	TTCGAA	1 cut(s)	3295
BstDSI	CCRYGG	2 cut(s)	687, 2528
BstEII	GGTNACC	1 cut(s)	238
BstFNI	CGCG	3 cut(s)	2530, 3379, 3913
BstH2I	RGCGCY	2 cut(s)	1545, 2496
BstHHI	GCGC	2 cut(s)	1544, 2495
BstMAI	GTCTC	8 cut(s)	322, 593, 1128, 1582, 2670, 3080, 3764, 3805
BstNSI	RCATGY	4 cut(s)	514, 1611, 2438, 2456
BstPAI	GACNNNNGTC	1 cut(s)	3817
BstPI	GGTNACC	1 cut(s)	238
BstSFI	CTRYAG	5 cut(s)	946, 2292, 2710, 3152, 3731
BstSLI	GKGCMC	6 cut(s)	801, 1182, 1804, 4142, 4260, 4286
BstSNI	TACGTA	1 cut(s)	227
BstUI	CGCG	3 cut(s)	2530, 3379, 3913
BstV2I	GAAGAC	5 cut(s)	194, 788, 902, 4058, 4442
BstX2I	RGATCY	6 cut(s)	97, 638, 1744, 1861, 2296, 3858
BstYI	RGATCY	6 cut(s)	97, 638, 1744, 1861, 2296, 3858
Bsu36I	CCTNAGG	1 cut(s)	2820
BsuI	GTATCC	1 cut(s)	3548
BsuRI	GGCC	9 cut(s)	86, 235, 252, 314, 470, 776, 2839, 3671, 3904
BtgI	CCRYGG	2 cut(s)	687, 2528
BtsI	GCAGTG	3 cut(s)	3246, 3728, 4035
BveI	ACCTGC	2 cut(s)	939, 1426
CaiI	CAGNNNCTG	3 cut(s)	1591, 3122, 3983
CciI	TCATGA	1 cut(s)	739
CfoI	GCGC	2 cut(s)	1544, 2495
Cfr10I	RCCGGY	3 cut(s)	235, 242, 4016
Cfr42I	CCGCGG	1 cut(s)	2531
Cfr9I	CCCGGG	2 cut(s)	515, 671
CseI	GACGC	2 cut(s)	3385, 3576
CspAI	ACCGGT	2 cut(s)	242, 4016
CspCI	CAANNNNNGTGG	2 cut(s)	4189, 4224
DinI	GGCGCC	1 cut(s)	2494
DraIII	CACNNNGTG	1 cut(s)	3808
DriI	GACNNNNNGTC	1 cut(s)	2822
Eam1104I	CTCTTC	7 cut(s)	380, 392, 542, 2711, 2928, 3056, 3297
Eam1105I	GACNNNNNGTC	1 cut(s)	2822
EarI	CTCTTC	7 cut(s)	380, 392, 542, 2711, 2928, 3056, 3297
EciI	GGCGGA	1 cut(s)	2633
Ecl136II	GAGCTC	1 cut(s)	540
Eco105I	TACGTA	1 cut(s)	227
Eco130I	CCWWGG	2 cut(s)	687, 4286
Eco24I	GRGCYC	3 cut(s)	52, 542, 4327
Eco31I	GGTCTC	2 cut(s)	322, 3764
Eco32I	GATATC	2 cut(s)	448, 1670
Eco47I	GGWCC	5 cut(s)	31, 1766, 2816, 3203, 3819
Eco47III	AGCGCT	1 cut(s)	1543
Eco53kI	GAGCTC	1 cut(s)	540
Eco57I	CTGAAG	7 cut(s)	936, 1326, 2214, 3761, 4026, 4050, 4074
Eco72I	CACGTG	1 cut(s)	730
Eco81I	CCTNAGG	1 cut(s)	2820
Eco88I	CYCGRG	3 cut(s)	65, 515, 671
Eco91I	GGTNACC	1 cut(s)	238
EcoICRI	GAGCTC	1 cut(s)	540
EcoO109I	RGGNCCY	3 cut(s)	31, 1766, 3819
EcoO65I	GGTNACC	1 cut(s)	238
EcoRI	GAATTC	1 cut(s)	4115
EcoRV	GATATC	2 cut(s)	448, 1670
EcoT14I	CCWWGG	2 cut(s)	687, 4286
EcoT22I	ATGCAT	3 cut(s)	2335, 2436, 2782
EcoT38I	GRGCYC	3 cut(s)	52, 542, 4327
EgeI	GGCGCC	1 cut(s)	2494
EheI	GGCGCC	1 cut(s)	2494
ErhI	CCWWGG	2 cut(s)	687, 4286
FalI	AAGNNNNNCTT	6 cut(s)	389, 421, 1440, 1472, 4205, 4237
FaqI	GGGAC	6 cut(s)	155, 669, 1752, 2085, 3805, 4347
FauI	CCCGC	4 cut(s)	323, 2848, 3468, 3830
FbaI	TGATCA	1 cut(s)	3460
FriOI	GRGCYC	3 cut(s)	52, 542, 4327
FspBI	CTAG	6 cut(s)	564, 1154, 2052, 2427, 3057, 3906
GlaI	GCGC	2 cut(s)	1543, 2494
GsaI	CCCAGC	4 cut(s)	265, 969, 2091, 2670
GsuI	CTGGAG	2 cut(s)	2388, 2781
HaeII	RGCGCY	2 cut(s)	1545, 2496
HaeIII	GGCC	9 cut(s)	86, 235, 252, 314, 470, 776, 2839, 3671, 3904
HgaI	GACGC	2 cut(s)	3385, 3576
HhaI	GCGC	2 cut(s)	1544, 2495
Hin1I	GRCGYC	1 cut(s)	2493
Hin6I	GCGC	2 cut(s)	1542, 2493
HinP1I	GCGC	2 cut(s)	1542, 2493
HindIII	AAGCTT	2 cut(s)	132, 2993
Hpy166II	GTNNAC	9 cut(s)	478, 1180, 1379, 1393, 3830, 4033, 4140, 4258, 4348
Hpy8I	GTNNAC	9 cut(s)	478, 1180, 1379, 1393, 3830, 4033, 4140, 4258, 4348
Hpy99I	CGWCG	2 cut(s)	1095, 4254
HpyCH4IV	ACGT	8 cut(s)	226, 680, 729, 1369, 2340, 3106, 4188, 4368
HpySE526I	ACGT	8 cut(s)	226, 680, 729, 1369, 2340, 3106, 4188, 4368
Hsp92I	GRCGYC	1 cut(s)	2493
HspAI	GCGC	2 cut(s)	1542, 2493
KasI	GGCGCC	1 cut(s)	2492
KflI	GGGWCCC	2 cut(s)	1766, 3819
Ksp22I	TGATCA	1 cut(s)	3460
KspI	CCGCGG	1 cut(s)	2531
LguI	GCTCTTC	2 cut(s)	380, 392
LmnI	GCTCC	6 cut(s)	67, 2327, 2407, 2481, 2947, 4333
LweI	GCATC	9 cut(s)	156, 1069, 1469, 1810, 2320, 2742, 3103, 3226, 4286
MaeI	CTAG	6 cut(s)	564, 1154, 2052, 2427, 3057, 3906
MaeII	ACGT	8 cut(s)	226, 680, 729, 1369, 2340, 3106, 4188, 4368
MbiI	CCGCTC	2 cut(s)	345, 2730
MfeI	CAATTG	2 cut(s)	195, 2142
MflI	RGATCY	6 cut(s)	97, 638, 1744, 1861, 2296, 3858
Mly113I	GGCGCC	1 cut(s)	2493
MlyI	GAGTC	8 cut(s)	223, 877, 1946, 2127, 2151, 3137, 3283, 3844
MmeI	TCCRAC	3 cut(s)	1114, 3230, 3427
Mph1103I	ATGCAT	3 cut(s)	2335, 2436, 2782
MroXI	GAANNNNTTC	1 cut(s)	4220
MseI	TTAA	4 cut(s)	1023, 1248, 1493, 4170
MslI	CAYNNNNRTG	6 cut(s)	905, 1185, 1465, 4263, 4312, 4353
MspA1I	CMGCKG	5 cut(s)	535, 714, 2087, 2530, 4046
MunI	CAATTG	2 cut(s)	195, 2142
Mva1269I	GAATGC	6 cut(s)	524, 2436, 2611, 3313, 4066, 4444
MvnI	CGCG	3 cut(s)	2530, 3379, 3913
NarI	GGCGCC	1 cut(s)	2493
NcoI	CCATGG	1 cut(s)	687
NmeAIII	GCCGAG	1 cut(s)	112
NmuCI	GTSAC	6 cut(s)	909, 979, 1994, 2365, 3040, 3558
NsiI	ATGCAT	3 cut(s)	2335, 2436, 2782
NspI	RCATGY	4 cut(s)	514, 1611, 2438, 2456
NspV	TTCGAA	1 cut(s)	3295
OliI	CACNNNNGTG	2 cut(s)	1185, 4353
PaeI	GCATGC	1 cut(s)	2456
PagI	TCATGA	1 cut(s)	739
PasI	CCCWGGG	1 cut(s)	801
PciI	ACATGT	1 cut(s)	1607
PciSI	GCTCTTC	2 cut(s)	380, 392
PcsI	WCGNNNNNNNCGW	1 cut(s)	1204
PctI	GAATGC	6 cut(s)	524, 2436, 2611, 3313, 4066, 4444
PdmI	GAANNNNTTC	1 cut(s)	4220
PflMI	CCANNNNNTGG	3 cut(s)	3899, 3983, 4388
PfoI	TCCNGGA	2 cut(s)	2404, 2967
PinAI	ACCGGT	2 cut(s)	242, 4016
PleI	GAGTC	8 cut(s)	222, 877, 1946, 2127, 2151, 3137, 3283, 3844
PluTI	GGCGCC	1 cut(s)	2496
PmaCI	CACGTG	1 cut(s)	730
PmlI	CACGTG	1 cut(s)	730
PpsI	GAGTC	8 cut(s)	222, 877, 1946, 2127, 2151, 3137, 3283, 3844
Ppu21I	YACGTR	4 cut(s)	227, 681, 730, 1370
PpuMI	RGGWCCY	3 cut(s)	31, 1766, 3819
PscI	ACATGT	1 cut(s)	1607
PshAI	GACNNNNGTC	1 cut(s)	3817
Psp124BI	GAGCTC	1 cut(s)	542
Psp5II	RGGWCCY	3 cut(s)	31, 1766, 3819
PspCI	CACGTG	1 cut(s)	730
PspEI	GGTNACC	1 cut(s)	238
PspFI	CCCAGC	4 cut(s)	261, 965, 2087, 2666
PspPPI	RGGWCCY	3 cut(s)	31, 1766, 3819
PstI	CTGCAG	2 cut(s)	950, 3735
PstNI	CAGNNNCTG	3 cut(s)	1591, 3122, 3983
PsuI	RGATCY	6 cut(s)	97, 638, 1744, 1861, 2296, 3858
PvuII	CAGCTG	3 cut(s)	714, 2087, 4046
RseI	CAYNNNNRTG	6 cut(s)	905, 1185, 1465, 4263, 4312, 4353
SacI	GAGCTC	1 cut(s)	542
SacII	CCGCGG	1 cut(s)	2531
SapI	GCTCTTC	2 cut(s)	380, 392
SaqAI	TTAA	4 cut(s)	1023, 1248, 1493, 4170
ScaI	AGTACT	1 cut(s)	562
SchI	GAGTC	8 cut(s)	223, 877, 1946, 2127, 2151, 3137, 3283, 3844
SfaNI	GCATC	9 cut(s)	156, 1069, 1469, 1810, 2320, 2742, 3103, 3226, 4286
SfcI	CTRYAG	5 cut(s)	946, 2292, 2710, 3152, 3731
SfoI	GGCGCC	1 cut(s)	2494
Sfr303I	CCGCGG	1 cut(s)	2531
SfuI	TTCGAA	1 cut(s)	3295
SgrBI	CCGCGG	1 cut(s)	2531
SinI	GGWCC	5 cut(s)	31, 1766, 2816, 3203, 3819
SmaI	CCCGGG	2 cut(s)	517, 673
SmiMI	CAYNNNNRTG	6 cut(s)	905, 1185, 1465, 4263, 4312, 4353
SmlI	CTYRAG	2 cut(s)	2447, 3170
SmoI	CTYRAG	2 cut(s)	2447, 3170
SnaBI	TACGTA	1 cut(s)	227
SphI	GCATGC	1 cut(s)	2456
SspDI	GGCGCC	1 cut(s)	2492
SspI	AATATT	1 cut(s)	2228
SspMI	CTAG	6 cut(s)	564, 1154, 2052, 2427, 3057, 3906
SstI	GAGCTC	1 cut(s)	542
StyI	CCWWGG	2 cut(s)	687, 4286
TaiI	ACGT	8 cut(s)	229, 683, 732, 1372, 2343, 3109, 4191, 4371
TatI	WGTACW	3 cut(s)	459, 560, 1772
TauI	GCSGC	4 cut(s)	348, 535, 2493, 2730
Tru1I	TTAA	4 cut(s)	1023, 1248, 1493, 4170
Tru9I	TTAA	4 cut(s)	1023, 1248, 1493, 4170
TseFI	GTSAC	6 cut(s)	909, 979, 1994, 2365, 3040, 3558
Tsp45I	GTSAC	6 cut(s)	909, 979, 1994, 2365, 3040, 3558
TspGWI	ACGGA	6 cut(s)	1431, 2389, 2468, 2971, 3260, 4346
TspMI	CCCGGG	2 cut(s)	515, 671
Van91I	CCANNNNNTGG	3 cut(s)	3899, 3983, 4388
VneI	GTGCAC	3 cut(s)	1178, 4138, 4256
VpaK11BI	GGWCC	5 cut(s)	31, 1766, 2816, 3203, 3819
XapI	RAATTY	4 cut(s)	971, 3598, 4115, 4217
XbaI	TCTAGA	1 cut(s)	2426
XceI	RCATGY	4 cut(s)	514, 1611, 2438, 2456
XcmI	CCANNNNNNNNNTGG	3 cut(s)	694, 1736, 3316
XmaI	CCCGGG	2 cut(s)	515, 671
XmnI	GAANNNNTTC	1 cut(s)	4220
XspI	CTAG	6 cut(s)	564, 1154, 2052, 2427, 3057, 3906
ZrmI	AGTACT	1 cut(s)	562
Zsp2I	ATGCAT	3 cut(s)	2335, 2436, 2782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.