RLG00000004448

lysine-specific demethylase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
59434293 .. 59441192
6900 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004448

Sequence Viewer

Length: 4494 bp
ATGGCAGCTTCGGAGCAACCCCAGGAAGTTCTCCCATGGCTCAGAGCCCTACCCGTAGCTCCAGAGTACCACCCTACTTGGGCCGAGTTCCAAGATCCGATTGCCTACATTTTCAAGATCGAGAAGGAGGCTTCCAAGTATGGAATCTGCAAAATCGTGCCGCCGGTGCCGCCTGCTCCGAAGAAAACAGCAATTGCTAATCTCAACAAGTCTCTGGTGGCGCGTGGTGGGCCTTCGGTTGGAAAAGGCCCGAAAGCCCTGCCCACATTCACTACCCGGCAGCAGCAGATCGGGTTCTGCCCCCGGAAGGCCCGCCCCGTGCAGAGACCCGTCTGGCAGAGCGGCGAGAACTACACATTCAACCAATTCGAGGCCAAAGCCAAGAGCTTTGAGAAGAGCTACTTGAAGAAGCGGAGGAAGAAGGGAGGCCTGAACCCTCTGGATATCGAGACCCTTTACTGGAAAGCCACTGTGGACAAGCCCTTTTCCGTTGAGTATGCCAATGACATGCCCGGCTCGGCTTTCGTGCCGCTCAGCAGCAAGAAGAGTGGTGCCAGCACTAGCAGGGAGGCAGGGGATGGCGTCACGCTGGGAGAGACGGCCTGGAATATGAGGGGAGTTTCGAGGTCGAGAGGGTCTCTGTTGAGGTTTATGAAGGAGGAGATTCCCGGGGTTACGTGTCCAATGGTGTACGTGGCCATGATGTTCAGCTGGTTTGCTTGGCACGTGGAGGATCATGACTTGCATAGCTTGAATTATCTGCATTTGGGAGCAGGGAAGACTTGGTATGGCGTGCCCAGGGAGGCTGCGGTGGCGTTCGAGGAGGTGGTCAGAGTTCAGGGGTATGGAGGAGAGATCAATCCTCTTGTTACATTTGCGACGCTTGGTGAGAAGACCACCGTGATGTCACCTGAAGTCTTTATTAGTTCAGGGATTCCATGCTGCAGGTTAGTGCAAAATGCTGGGGAATTTGTTGTCACTTTTCCAAGAGCCTATCACACTGGATTCAGTCACGGATTTAATTGTGGGGAGGCAGCCAACATTGCAACTCCTGAGTGGTTGAGGGTTGCCAATGATGCTGCTGTCCGACGAGCTTCAATCAATTATCCTCCTATGGTGTCTCATTTTCAGTTACTTTATGATCTTGCTCTAGCATTATGTTCAAGAACGCCTGTGCGCAATAGTGCTGAACCTCGAAGTTCTCGATTAAAAGATAAGAAAAAGGGTGAAGGAGAAACAGTAGTTAAAGGTTTATTTGTGAAGAATGTCATTCAGAACAACGAGCTGCTTCATGTTCTTGGAAAAGGGTCGTCAATTGTACTTCTACCACAGAGTTCTTCAGACATTTCTGTTTGTTCAAAATTACGTGTTGGTTCACAGTTAAGAGTAAACCCTGATGATCTCATGATAGACGGGAAGCAGGGAATGAAGCAGGTAAAAGGGTTGTATTCAGTGAAAGGAAAACTTGCATCTTTATGTGAAAGTAGCCAGCATCCCTCATTAAATGCAAATGGCAATGCAAGTACTCCTTCTAAGATGTTGAACATGAGCGCTAAAAGAGAAAGTAATGTTGAAGGCGAAGGGTTGTCAGATCAGAGACTATTTTCATGTGTTACATGTGGAATTTTGAGCTTTTCATGTGTTGCTATAATTCAACCAAGAGAAGCAGCAGCCAGATATCTCATGTCAGCAAATTGTAGTTTTTTCAACGACTGGGCTGTTGATTGTGAGCCTATCCAGGTTGCAAATGCAGATCCAGATAGTTCAAAGAAGGGTTCCTGTACAGAAACAGGATTGATGCAAAAGAGTACCCATGATGGTTTATACGATGTGCCCGTTCAGTCTGCTGATTATCGAAATCAGATCACAGATCCAATCAATGAAGTTGATTCAAATACTGAAAAGCAGAGAGATACTAATGCTCTTGGGCTATTAGCTTTGACCTATGGAGATTCATCTGACTCGGAGGAAGATCAGGCTGAACCAGATGTTCCTGTTTGTGGTGACGAAACAAACTTGTCAGACTGTTCTTTGGAAGGTAGATATGAGTATAAAAGTGCTAGTCCTCCTTTGAGAGATTCTTATGGAGGTACAACTGGGGTTCGCAGTCCAACTTCACCAGGATTTGATTGTGGTAATGAACTCCCGACTGTTGATGGCAATGTGGAAAATAGACGTGAAGCAACTAATTTCAAGGATAATGGTCATCAATATATTGACTGTTCTGTTGATCTTGACACAAATAATCTTGCTTTGACAAAGACAAATGGTTTGGCGGGTACATCTATAGATCCAGTAAAGGTTTCATATTCCGGCTCCCCAGATGCATTTGACGTTCAACCAACACAATTTGGTCAGGCCACTTTACGGAAAGAGAGTACAGGCACATCATTTTTTCCAGGATGTGACCAGGATTCTTCTAGAATGCATGTGTTCTGCCTTGAGCATGCTGTAGAGGTTGAGCAGCAGCTCCGTTCATTTGGAGGTGCCCATATATTACTCCTTTGTCATCCAGACTATCCGCGGATAGTGGATGAAGCAAAAGAAATAGCAGAAGAACTGGGAGTAAGTTATCCCTGGAATGATATGGTATTCAGGGATGCCACCAGGGAGGATGAGGAGAGGATTCAGTCAGCTCTGGATAGTGAGGAAGCCATTGCTGGGAATGGTGACTGGGCTGTAAAGATGGGGATCAATCTCTTCTACAGTGCCAGCCTTAGCCGCTCTCATCTTTATAGTAAGCAGATGCCATACAATTCTGTTATATACAATGCATTTGGTCGTAGTTCTCCAGCTAGCTCGCCTGCAGGACCTGAGGTCTGTGGGAGGAGGCCTGCCAAACAGAAAAAGATTGTGGTAGGGAAATGGTGCGGTAAAGTTTGGATGTCAAATCAAGTTCATCCCTTCTTAATAAAAAGGGATCATGAAGAGAAAAAAGTAGAGCTAGAACAGAGGAGGTTCCACGATTCAGCAATGCCAGATGAGAAGCTTGATGGAAAATCAGAAAGCACACGCAAAACTGAGAAAACTATGGTGACTAAACAGTATTCTAGGAAGAGGAAAATGACTGTAGAGGGTGGGCCAACCAAGAAAGCAAAATGTCCTGATGCAGTTTCTGCTCATTCAGTAGATGATAACTCCCATCAGCAGCAGAAGAGGTTTCTCAAGAACAAGCAAGCCAAATATATAGACAGTGGTCCAACCAAGAAAGCAAAGTTTATTGAGACGGAAGATGCAGCGTCAGGTGATTCAATGGAAGATGATTTCCGTCAGCAAAATAGGAGGACTCTTCGAAGCGAGCAAGCCAAGTATATTGAGGGAGATGATGATGTTTCAGATGATTCAATGGGAGTTGATTCTCATCAGCAGCAGAGGCGGATTGCTAAAAGTAAGCAAGCGAAGTATATTGCCAGAGATTTCTCTATGTTGTCAGATGATTCAGTTGGAGTTAATTCTGATCAGCAGCAGAGGCGGGTTGCTGAAAGTAATGCCAGGGAGTTCTCTGCGGTTTCAGATGATTCGCTTGAGGATAATATCCATCAGCTGCATAGGAGGTCACTTAGGCGCAACAAAGGTAAATGCATTGGGAGAGGAAATTTGACTTCGCAAAATCTTCACGGGGTTAGTTCTCGTCAGCAACAAAGGAGGACTTCTAAAAGCAAGCGGGCCAAAATTGTGGAGAGAGAAGATGCAGCTCTGGATGACACACCGGATGATAATGCTGCACTGCAGCTTAAGAGTTTCCGAGGCAGGCAAATAAAACCAGAGACCGTTCAGCAAAAGAAACAGGAAACTCCTCGCCGTGTGAAGCAAGGCTCCCGCCGTCTTCAAGAAACCCAGCAAAAGACTCCCAGGATCCAAAATAATCAATATGAACAAAACACCGTTGATGTAAATGCTGAGGAACCAGAAGGTGGCCCTAGCACGCGACTTAGAAAAAGACCTCCAAAAGAGCAGCCAGAAACCGGCAGGAAAAAGGCAAAAGAGCAGCCAGAAACCGGAAGGAAAAAGGCAAGAGAGCAGCAACAAACTGGTAGGATAAAGGTGAACACTGCTTTAGCTGTGAAGACAAAGAATGCTTCGGCTCGGAAGGGAAAGAATGCTTCAGCAGTGAGGGAAGAGGAAGCAGAATTCTTGTGTGACGTTGAGGGGTGCACCATGAGTTTTGGCACGAAACAAGAGCTAAATCTCCACAAGAAAAACGTGTGTCCAGTCAAGGGGTGTGGAAAGAAATTCTTCTCGCACAAGTATCTGGTGCAACATCGTCGAGTTCATGAGGATGACCGCCCCCTTCGGTGCCCTTGGAAGGGATGCAAGATGACATTCAAGTGGGCATGGGCTCGGACTGAGCACATTAGGGTGCACACAGGTGCCCGTCCCTATGTCTGTGCGGAGCCAGGGTGTGGGCAGACCTTTCGGTTTGTGTCAGATTTCAGCCGTCATAAGCGGAAGACTGGGCATTCAGTAAAGAAAGGTAAGGGGCGATCGCGATGA

Protein Analysis

1498

Amino Acids

166.84

Weight (kDa)

9.07

Isoelectric Point (pI)

49.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JmjN PF02375 21 - 54 1.9e-15 jmjN domain
JmjC PF02373 230 - 347 1.2e-34 JmjC domain, hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1178
Acc36I ACCTGC 2 cut(s) 936, 1423
AccB1I GGYRCC 5 cut(s) 166, 551, 2486, 4296, 4370
AccB7I CCANNNNNTGG 2 cut(s) 3914, 4403
AccBSI CCGCTC 3 cut(s) 342, 532, 2724
AccII CGCG 4 cut(s) 223, 2524, 3928, 4489
AclWI GGATC 9 cut(s) 89, 741, 1748, 1865, 2285, 2699, 2928, 3850, 3863
AcoI YGGCCR 1 cut(s) 696
AcsI RAATTY 5 cut(s) 968, 1623, 3595, 4130, 4232
AcuI CTGAAG 3 cut(s) 933, 1323, 4089
AcvI CACGTG 1 cut(s) 727
AcyI GRCGYC 1 cut(s) 582
AfaI GTAC 9 cut(s) 68, 692, 1320, 1525, 1783, 1810, 2092, 2281, 2380
AfeI AGCGCT 1 cut(s) 1552
AflII CTTAAG 1 cut(s) 3734
AflIII ACRYGT 4 cut(s) 677, 1366, 1616, 4203
AhdI GACNNNNNGTC 1 cut(s) 2816
AjiI CACGTC 1 cut(s) 2177
AleI CACNNNNGTG 1 cut(s) 4368
Alw21I GWGCWC 3 cut(s) 4157, 4353, 4365
Alw26I GTCTC 9 cut(s) 216, 319, 443, 590, 642, 1125, 1591, 3218, 3761
Alw44I GTGCAC 2 cut(s) 4153, 4361
AlwI GGATC 9 cut(s) 89, 741, 1748, 1865, 2285, 2699, 2928, 3850, 3863
AlwNI CAGNNNCTG 2 cut(s) 2813, 3116
Ama87I CYCGRG 1 cut(s) 668
Aor51HI AGCGCT 1 cut(s) 1552
ApaLI GTGCAC 2 cut(s) 4153, 4361
ApoI RAATTY 5 cut(s) 968, 1623, 3595, 4130, 4232
ArsI GACNNNNNNTTYG 2 cut(s) 2254, 2286
AsiSI GCGATCGC 1 cut(s) 4487
Asp700I GAANNNNTTC 1 cut(s) 4235
AspLEI GCGC 4 cut(s) 223, 1179, 1553, 3567
AspS9I GGNCC 9 cut(s) 81, 230, 248, 310, 2810, 3080, 3197, 3666, 3917
AsuC2I CCSGG 5 cut(s) 277, 304, 513, 669, 670
AsuHPI GGTGA 9 cut(s) 899, 900, 1238, 2015, 2109, 2681, 3046, 3257, 4057
AsuII TTCGAA 1 cut(s) 3292
AsuNHI GCTAGC 1 cut(s) 2795
AvaI CYCGRG 1 cut(s) 668
AvaII GGWCC 2 cut(s) 2810, 3197
AxyI CCTNAGG 1 cut(s) 2814
BaeGI GKGCMC 7 cut(s) 798, 1836, 2491, 4157, 4301, 4365, 4375
BalI TGGCCA 1 cut(s) 698
BamHI GGATCC 1 cut(s) 3855
BanI GGYRCC 5 cut(s) 166, 551, 2486, 4296, 4370
BanII GRGCYC 2 cut(s) 49, 4342
BbrPI CACGTG 1 cut(s) 727
BbsI GAAGAC 5 cut(s) 785, 899, 3818, 4073, 4457
Bbv12I GWGCWC 3 cut(s) 4157, 4353, 4365
BbvCI CCTCAGC 1 cut(s) 3900
BccI CCATC 7 cut(s) 572, 1811, 2150, 2680, 2987, 3150, 3546
BceAI ACGGC 4 cut(s) 615, 3786, 3807, 4422
BcgI CGANNNNNNTGC 6 cut(s) 241, 275, 4247, 4281, 4397, 4431
BclI TGATCA 1 cut(s) 3457
BcnI CCSGG 5 cut(s) 277, 304, 513, 669, 670
BcoDI GTCTC 9 cut(s) 216, 319, 443, 590, 642, 1125, 1591, 3218, 3761
BfaI CTAG 8 cut(s) 561, 1151, 2061, 2421, 2796, 2945, 3051, 3921
BfmI CTRYAG 7 cut(s) 943, 2286, 2451, 2704, 2805, 3069, 3728
BfoI RGCGCY 1 cut(s) 1554
BfrI CTTAAG 1 cut(s) 3734
BfuAI ACCTGC 2 cut(s) 936, 1423
BlpI GCTNAGC 1 cut(s) 533
BmcAI AGTACT 1 cut(s) 1525
Bme18I GGWCC 2 cut(s) 2810, 3197
BmeRI GACNNNNNGTC 1 cut(s) 2816
BmeT110I CYCGRG 1 cut(s) 668
BmgBI CACGTC 1 cut(s) 2177
BmgT120I GGNCC 9 cut(s) 81, 230, 248, 310, 2810, 3080, 3197, 3666, 3917
BmrI ACTGGG 5 cut(s) 1723, 2106, 2570, 2683, 4464
BmtI GCTAGC 1 cut(s) 2799
BmuI ACTGGG 5 cut(s) 1723, 2106, 2570, 2683, 4464
BoxI GACNNNNGTC 1 cut(s) 3195
BpiI GAAGAC 5 cut(s) 785, 899, 3818, 4073, 4457
BplI GAGNNNNNCTC 2 cut(s) 622, 654
BpmI CTGGAG 2 cut(s) 45, 2775
Bpu10I CCTNAGC 2 cut(s) 2717, 3900
Bpu1102I GCTNAGC 1 cut(s) 533
Bpu14I TTCGAA 1 cut(s) 3292
BpuEI CTTGAG 3 cut(s) 2462, 3149, 3545
BpuMI CCSGG 5 cut(s) 277, 304, 513, 669, 670
BsaAI YACGTR 4 cut(s) 678, 694, 727, 1367
BsaBI GATNNNNATC 2 cut(s) 2690, 3360
BsaHI GRCGYC 1 cut(s) 582
BsaI GGTCTC 4 cut(s) 319, 443, 642, 3761
BsaWI WCCGGW 2 cut(s) 3709, 3998
BsaXI ACNNNNNCTCC 4 cut(s) 1224, 1254, 4385, 4415
Bse118I RCCGGY 2 cut(s) 163, 3965
Bse21I CCTNAGG 1 cut(s) 2814
Bse3DI GCAATG 5 cut(s) 1041, 1522, 2167, 2655, 2979
Bse8I GATNNNNATC 2 cut(s) 2690, 3360
BseJI GATNNNNATC 2 cut(s) 2690, 3360
BseMI GCAATG 5 cut(s) 1041, 1522, 2167, 2655, 2979
BseMII CTCAG 7 cut(s) 55, 547, 1044, 2805, 3012, 3891, 4338
BseRI GAGGAG 7 cut(s) 674, 836, 864, 2633, 2842, 2968, 3786
BseSI GKGCMC 7 cut(s) 798, 1836, 2491, 4157, 4301, 4365, 4375
BseYI CCCAGC 4 cut(s) 589, 962, 2660, 3837
BsgI GTGCAG 2 cut(s) 341, 3708
Bsh1236I CGCG 4 cut(s) 223, 2524, 3928, 4489
Bsh1285I CGRYCG 1 cut(s) 4487
BshNI GGYRCC 5 cut(s) 166, 551, 2486, 4296, 4370
BsiEI CGRYCG 1 cut(s) 4487
BsiHKAI GWGCWC 3 cut(s) 4157, 4353, 4365
BsiHKCI CYCGRG 1 cut(s) 668
BsiSI CCGG 9 cut(s) 164, 277, 304, 513, 669, 2313, 3710, 3966, 3999
BslFI GGGAC 1 cut(s) 4362
BsmAI GTCTC 9 cut(s) 216, 319, 443, 590, 642, 1125, 1591, 3218, 3761
BsmBI CGTCTC 2 cut(s) 590, 3218
BsmFI GGGAC 1 cut(s) 4362
BsmI GAATGC 4 cut(s) 2430, 4081, 4105, 4459
Bso31I GGTCTC 4 cut(s) 319, 443, 642, 3761
BsoBI CYCGRG 1 cut(s) 668
Bsp119I TTCGAA 1 cut(s) 3292
Bsp1407I TGTACA 1 cut(s) 1781
Bsp1720I GCTNAGC 1 cut(s) 533
Bsp19I CCATGG 1 cut(s) 35
Bsp68I TCGCGA 1 cut(s) 4489
BspCNI CTCAG 7 cut(s) 54, 546, 1045, 2806, 3013, 3892, 4339
BspFNI CGCG 4 cut(s) 223, 2524, 3928, 4489
BspHI TCATGA 4 cut(s) 736, 1404, 2923, 4273
BspMAI CTGCAG 3 cut(s) 947, 2809, 3732
BspMI ACCTGC 2 cut(s) 936, 1423
BspOI GCTAGC 1 cut(s) 2799
BspPI GGATC 9 cut(s) 89, 741, 1748, 1865, 2285, 2699, 2928, 3850, 3863
BspQI GCTCTTC 1 cut(s) 389
BspT104I TTCGAA 1 cut(s) 3292
BspT107I GGYRCC 5 cut(s) 166, 551, 2486, 4296, 4370
BspTI CTTAAG 1 cut(s) 3734
BspTNI GGTCTC 4 cut(s) 319, 443, 642, 3761
BsrBI CCGCTC 3 cut(s) 342, 532, 2724
BsrDI GCAATG 5 cut(s) 1041, 1522, 2167, 2655, 2979
BsrFI RCCGGY 2 cut(s) 163, 3965
BsrGI TGTACA 1 cut(s) 1781
BssAI RCCGGY 2 cut(s) 163, 3965
BssNI GRCGYC 1 cut(s) 582
BssT1I CCWWGG 2 cut(s) 35, 4301
Bst6I CTCTTC 8 cut(s) 389, 539, 2705, 2922, 3050, 3149, 3294, 4113
BstACI GRCGYC 1 cut(s) 582
BstAFI CTTAAG 1 cut(s) 3734
BstAPI GCANNNNNTGC 1 cut(s) 3116
BstAUI TGTACA 1 cut(s) 1781
BstBAI YACGTR 4 cut(s) 678, 694, 727, 1367
BstBI TTCGAA 1 cut(s) 3292
BstDSI CCRYGG 2 cut(s) 35, 2522
BstFNI CGCG 4 cut(s) 223, 2524, 3928, 4489
BstH2I RGCGCY 1 cut(s) 1554
BstHHI GCGC 4 cut(s) 223, 1179, 1553, 3567
BstMAI GTCTC 9 cut(s) 216, 319, 443, 590, 642, 1125, 1591, 3218, 3761
BstMCI CGRYCG 1 cut(s) 4487
BstNSI RCATGY 4 cut(s) 511, 1620, 2432, 2450
BstPAI GACNNNNGTC 1 cut(s) 3195
BstSFI CTRYAG 7 cut(s) 943, 2286, 2451, 2704, 2805, 3069, 3728
BstSLI GKGCMC 7 cut(s) 798, 1836, 2491, 4157, 4301, 4365, 4375
BstUI CGCG 4 cut(s) 223, 2524, 3928, 4489
BstV2I GAAGAC 5 cut(s) 785, 899, 3818, 4073, 4457
BstX2I RGATCY 5 cut(s) 94, 1753, 1870, 2290, 3855
BstXI CCANNNNNNTGG 1 cut(s) 3676
BstYI RGATCY 5 cut(s) 94, 1753, 1870, 2290, 3855
Bsu36I CCTNAGG 1 cut(s) 2814
BtgI CCRYGG 2 cut(s) 35, 2522
BtrI CACGTC 1 cut(s) 2177
BtsI GCAGTG 3 cut(s) 3725, 4050, 4116
BtsIMutI CAGTG 8 cut(s) 468, 999, 1458, 2713, 3199, 3725, 4050, 4116
BtuMI TCGCGA 1 cut(s) 4489
BveI ACCTGC 2 cut(s) 936, 1423
CaiI CAGNNNCTG 2 cut(s) 2813, 3116
CciI TCATGA 4 cut(s) 736, 1404, 2923, 4273
CfoI GCGC 4 cut(s) 223, 1179, 1553, 3567
Cfr10I RCCGGY 2 cut(s) 163, 3965
Cfr13I GGNCC 9 cut(s) 81, 230, 248, 310, 2810, 3080, 3197, 3666, 3917
Cfr42I CCGCGG 1 cut(s) 2525
Cfr9I CCCGGG 1 cut(s) 668
CseI GACGC 3 cut(s) 571, 889, 3228
Csp6I GTAC 9 cut(s) 67, 691, 1319, 1524, 1782, 1809, 2091, 2280, 2379
CspCI CAANNNNNGTGG 6 cut(s) 59, 94, 529, 564, 4204, 4239
CviQI GTAC 9 cut(s) 67, 691, 1319, 1524, 1782, 1809, 2091, 2280, 2379
DriI GACNNNNNGTC 1 cut(s) 2816
EaeI YGGCCR 1 cut(s) 696
Eam1104I CTCTTC 8 cut(s) 389, 539, 2705, 2922, 3050, 3149, 3294, 4113
Eam1105I GACNNNNNGTC 1 cut(s) 2816
EarI CTCTTC 8 cut(s) 389, 539, 2705, 2922, 3050, 3149, 3294, 4113
EciI GGCGGA 1 cut(s) 3391
Eco130I CCWWGG 2 cut(s) 35, 4301
Eco147I AGGCCT 2 cut(s) 429, 2833
Eco24I GRGCYC 2 cut(s) 49, 4342
Eco31I GGTCTC 4 cut(s) 319, 443, 642, 3761
Eco32I GATATC 2 cut(s) 445, 1679
Eco47I GGWCC 2 cut(s) 2810, 3197
Eco47III AGCGCT 1 cut(s) 1552
Eco57I CTGAAG 3 cut(s) 933, 1323, 4089
Eco72I CACGTG 1 cut(s) 727
Eco81I CCTNAGG 1 cut(s) 2814
Eco88I CYCGRG 1 cut(s) 668
EcoO109I RGGNCCY 1 cut(s) 2810
EcoRI GAATTC 1 cut(s) 4130
EcoRV GATATC 2 cut(s) 445, 1679
EcoT14I CCWWGG 2 cut(s) 35, 4301
EcoT22I ATGCAT 4 cut(s) 2329, 2430, 2776, 3584
EcoT38I GRGCYC 2 cut(s) 49, 4342
ErhI CCWWGG 2 cut(s) 35, 4301
Esp3I CGTCTC 2 cut(s) 590, 3218
FaqI GGGAC 1 cut(s) 4362
FauI CCCGC 5 cut(s) 320, 2269, 3465, 3657, 3827
FbaI TGATCA 1 cut(s) 3457
FriOI GRGCYC 2 cut(s) 49, 4342
FspBI CTAG 8 cut(s) 561, 1151, 2061, 2421, 2796, 2945, 3051, 3921
FspI TGCGCA 1 cut(s) 1178
GlaI GCGC 4 cut(s) 222, 1178, 1552, 3566
GsaI CCCAGC 4 cut(s) 593, 966, 2664, 3841
GsuI CTGGAG 2 cut(s) 45, 2775
HaeII RGCGCY 1 cut(s) 1554
HapII CCGG 9 cut(s) 164, 277, 304, 513, 669, 2313, 3710, 3966, 3999
HgaI GACGC 3 cut(s) 571, 889, 3228
HhaI GCGC 4 cut(s) 223, 1179, 1553, 3567
Hin1I GRCGYC 1 cut(s) 582
Hin6I GCGC 4 cut(s) 221, 1177, 1551, 3565
HinP1I GCGC 4 cut(s) 221, 1177, 1551, 3565
HindIII AAGCTT 1 cut(s) 2987
HpaII CCGG 9 cut(s) 164, 277, 304, 513, 669, 2313, 3710, 3966, 3999
HphI GGTGA 9 cut(s) 899, 900, 1238, 2015, 2109, 2681, 3046, 3257, 4057
Hpy166II GTNNAC 7 cut(s) 475, 691, 1376, 1390, 4048, 4155, 4363
Hpy8I GTNNAC 7 cut(s) 475, 691, 1376, 1390, 4048, 4155, 4363
Hpy99I CGWCG 3 cut(s) 883, 1092, 4269
HpyCH4IV ACGT 8 cut(s) 677, 693, 726, 1366, 2176, 2334, 4143, 4203
HpySE526I ACGT 8 cut(s) 677, 693, 726, 1366, 2176, 2334, 4143, 4203
Hsp92I GRCGYC 1 cut(s) 582
HspAI GCGC 4 cut(s) 221, 1177, 1551, 3565
Ksp22I TGATCA 1 cut(s) 3457
KspI CCGCGG 1 cut(s) 2525
LguI GCTCTTC 1 cut(s) 389
LmnI GCTCC 8 cut(s) 13, 64, 181, 770, 2321, 2475, 3821, 4393
MaeI CTAG 8 cut(s) 561, 1151, 2061, 2421, 2796, 2945, 3051, 3921
MaeII ACGT 8 cut(s) 677, 693, 726, 1366, 2176, 2334, 4143, 4203
MbiI CCGCTC 3 cut(s) 342, 532, 2724
MfeI CAATTG 2 cut(s) 192, 1314
MflI RGATCY 5 cut(s) 94, 1753, 1870, 2290, 3855
MlsI TGGCCA 1 cut(s) 698
MluNI TGGCCA 1 cut(s) 698
MlyI GAGTC 3 cut(s) 1955, 3280, 3841
MmeI TCCRAC 5 cut(s) 220, 1111, 2135, 3224, 3424
Mox20I TGGCCA 1 cut(s) 698
Mph1103I ATGCAT 4 cut(s) 2329, 2430, 2776, 3584
MroXI GAANNNNTTC 1 cut(s) 4235
MscI TGGCCA 1 cut(s) 698
MseI TTAA 8 cut(s) 1020, 1208, 1245, 1382, 1502, 2909, 3450, 3735
MslI CAYNNNNRTG 6 cut(s) 902, 1474, 4278, 4327, 4358, 4368
Msp20I TGGCCA 1 cut(s) 698
MspA1I CMGCKG 3 cut(s) 711, 2524, 3544
MspCI CTTAAG 1 cut(s) 3734
MspI CCGG 9 cut(s) 164, 277, 304, 513, 669, 2313, 3710, 3966, 3999
MunI CAATTG 2 cut(s) 192, 1314
Mva1269I GAATGC 4 cut(s) 2430, 4081, 4105, 4459
MvnI CGCG 4 cut(s) 223, 2524, 3928, 4489
NciI CCSGG 5 cut(s) 277, 304, 513, 669, 670
NcoI CCATGG 1 cut(s) 35
NheI GCTAGC 1 cut(s) 2795
NmeAIII GCCGAG 2 cut(s) 109, 497
NruI TCGCGA 1 cut(s) 4489
NsbI TGCGCA 1 cut(s) 1178
NsiI ATGCAT 4 cut(s) 2329, 2430, 2776, 3584
NspI RCATGY 4 cut(s) 511, 1620, 2432, 2450
NspV TTCGAA 1 cut(s) 3292
OliI CACNNNNGTG 1 cut(s) 4368
PaeI GCATGC 1 cut(s) 2450
PagI TCATGA 4 cut(s) 736, 1404, 2923, 4273
PasI CCCWGGG 1 cut(s) 798
PceI AGGCCT 2 cut(s) 429, 2833
PciI ACATGT 1 cut(s) 1616
PciSI GCTCTTC 1 cut(s) 389
PcsI WCGNNNNNNNCGW 2 cut(s) 1201, 1833
PctI GAATGC 4 cut(s) 2430, 4081, 4105, 4459
PdmI GAANNNNTTC 1 cut(s) 4235
PflMI CCANNNNNTGG 2 cut(s) 3914, 4403
PfoI TCCNGGA 1 cut(s) 2398
Ple19I CGATCG 1 cut(s) 4487
PleI GAGTC 3 cut(s) 1955, 3280, 3841
PmaCI CACGTG 1 cut(s) 727
PmlI CACGTG 1 cut(s) 727
PpsI GAGTC 3 cut(s) 1955, 3280, 3841
Ppu21I YACGTR 4 cut(s) 678, 694, 727, 1367
PpuMI RGGWCCY 1 cut(s) 2810
PscI ACATGT 1 cut(s) 1616
PshAI GACNNNNGTC 1 cut(s) 3195
Psp5II RGGWCCY 1 cut(s) 2810
PspCI CACGTG 1 cut(s) 727
PspFI CCCAGC 4 cut(s) 589, 962, 2660, 3837
PspPI GGNCC 9 cut(s) 81, 230, 248, 310, 2810, 3080, 3197, 3666, 3917
PspPPI RGGWCCY 1 cut(s) 2810
PstI CTGCAG 3 cut(s) 947, 2809, 3732
PstNI CAGNNNCTG 2 cut(s) 2813, 3116
PsuI RGATCY 5 cut(s) 94, 1753, 1870, 2290, 3855
PvuI CGATCG 1 cut(s) 4487
PvuII CAGCTG 2 cut(s) 711, 3544
RgaI GCGATCGC 1 cut(s) 4487
RruI TCGCGA 1 cut(s) 4489
RsaI GTAC 9 cut(s) 68, 692, 1320, 1525, 1783, 1810, 2092, 2281, 2380
RsaNI GTAC 9 cut(s) 67, 691, 1319, 1524, 1782, 1809, 2091, 2280, 2379
RseI CAYNNNNRTG 6 cut(s) 902, 1474, 4278, 4327, 4358, 4368
SacII CCGCGG 1 cut(s) 2525
SapI GCTCTTC 1 cut(s) 389
SaqAI TTAA 8 cut(s) 1020, 1208, 1245, 1382, 1502, 2909, 3450, 3735
Sau96I GGNCC 9 cut(s) 81, 230, 248, 310, 2810, 3080, 3197, 3666, 3917
SbfI CCTGCAGG 1 cut(s) 2809
ScaI AGTACT 1 cut(s) 1525
SchI GAGTC 3 cut(s) 1955, 3280, 3841
SdaI CCTGCAGG 1 cut(s) 2809
SfaAI GCGATCGC 1 cut(s) 4487
SfcI CTRYAG 7 cut(s) 943, 2286, 2451, 2704, 2805, 3069, 3728
Sfr303I CCGCGG 1 cut(s) 2525
SfuI TTCGAA 1 cut(s) 3292
SgfI GCGATCGC 1 cut(s) 4487
SgrAI CRCCGGYG 1 cut(s) 163
SgrBI CCGCGG 1 cut(s) 2525
SinI GGWCC 2 cut(s) 2810, 3197
SmaI CCCGGG 1 cut(s) 670
SmiMI CAYNNNNRTG 6 cut(s) 902, 1474, 4278, 4327, 4358, 4368
SmlI CTYRAG 4 cut(s) 2441, 3164, 3524, 3734
SmoI CTYRAG 4 cut(s) 2441, 3164, 3524, 3734
SphI GCATGC 1 cut(s) 2450
Sse8387I CCTGCAGG 1 cut(s) 2809
SseBI AGGCCT 2 cut(s) 429, 2833
SspMI CTAG 8 cut(s) 561, 1151, 2061, 2421, 2796, 2945, 3051, 3921
StuI AGGCCT 2 cut(s) 429, 2833
StyI CCWWGG 2 cut(s) 35, 4301
TaiI ACGT 8 cut(s) 680, 696, 729, 1369, 2179, 2337, 4146, 4206
TatI WGTACW 4 cut(s) 1318, 1523, 1781, 2378
TauI GCSGC 5 cut(s) 163, 172, 345, 532, 2724
Tru1I TTAA 8 cut(s) 1020, 1208, 1245, 1382, 1502, 2909, 3450, 3735
Tru9I TTAA 8 cut(s) 1020, 1208, 1245, 1382, 1502, 2909, 3450, 3735
TscAI CASTG 8 cut(s) 475, 1006, 1458, 2713, 3199, 3732, 4057, 4116
TspGWI ACGGA 6 cut(s) 478, 1029, 2383, 2462, 3242, 3257
TspMI CCCGGG 1 cut(s) 668
TspRI CASTG 8 cut(s) 475, 1006, 1458, 2713, 3199, 3732, 4057, 4116
Van91I CCANNNNNTGG 2 cut(s) 3914, 4403
Vha464I CTTAAG 1 cut(s) 3734
VneI GTGCAC 2 cut(s) 4153, 4361
VpaK11BI GGWCC 2 cut(s) 2810, 3197
XapI RAATTY 5 cut(s) 968, 1623, 3595, 4130, 4232
XbaI TCTAGA 1 cut(s) 2420
XceI RCATGY 4 cut(s) 511, 1620, 2432, 2450
XmaI CCCGGG 1 cut(s) 668
XmnI GAANNNNTTC 1 cut(s) 4235
XspI CTAG 8 cut(s) 561, 1151, 2061, 2421, 2796, 2945, 3051, 3921
ZrmI AGTACT 1 cut(s) 1525
Zsp2I ATGCAT 4 cut(s) 2329, 2430, 2776, 3584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.