Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0011462

Physical Location & Seq

Genomic Coordinates Reverse (-)

19046467 .. 19053051

Gene Structure 6585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g14210.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4269 bp

ATGGCGGCTTCTTCTGGGTTGGTTGCAGAGGCGAACCCGGAAGTGTTTCCATGGCTCAAAACCCTACCCGTAGCTCCCGAGTACCACCCCACTTGGGCGGAGTTCCAAGATCCGATTGCCTACATTTTTAAAATCGAGAAGGAGGCTTCCCAGTACGGAATCTGCAAAATCGTGCCGCCGGTGCCGCCTTCCTCAAAGAAGACCACAATTGGGAACTTGAACCGGTCACTGGCTGCTCGGGCGGTGGTTTTGGGTTCTTCGGGCCCGAAATCCCAGCCCACATTCACTACCCGGCAGCAGCAGATCGGGTTCTGCCCTCGGAGGCCACGGCCCGTACACCGACCCGTGTGGCAGAGTGGCGAGCACTACACTTTCCAGGAATTTGAAGCGAAGGCTAAGAGCTTTGAGAAGAGTTACTTGAGAAAATGTAGCAAGAAGGGAGGGCTTTCGCCGCTGGAAATTGAAACCCTTTACTGGAAGGCGACTGTGGATAAACCCTTTTCGGTGGAGTATGCGAATGACATGCCCGGTTCAGCTTTTGTGCCAGTGAGTGCGAGGAAAAGTAGTAGTACTAGTAAAGATGCAGGGGACAATGTGACTCTTGGTGATACTGCTTGGAATATGAGGGGGGTGTCGAGGTCAAAAGGGTCGTTATTGAGGTTTATGAAGGAGGAGATTCCCGGGGTTACTTCGCCGATGGTGTATATAGCTATGTTGTTCAGCTGGTTTGCTTGGCATGTGGAGGACCATGACTTGCACAGCTTGAATTATCTGCATATGGGAGCAGGGAAGACGTGGTATGGTGTGCCGAGGGACGCTGCGGTTGCATTCGAGGAGGTTGTTAGGGTACAGGGCTATGGGGGAGAGATCAATCCTCTTGTTACCTTTTCAACCCTTGGCGAGAAGACGACTGTGATGGCGCCTGAAGTATTTGTCAGTTCAGGAGTTCCATGCTGCAGGCTTGTGCAAAATGCTGGGGACTTTGTTGTGACTTTCCCAAGAGCGTATCACACTGGATTCAGTCATGGATTTAATTTTGCGGAGGCAGCTAACATTGCAACTCCTGAGTGGTTGAGGGTTGCAAAAGATGCTGCTATTCGACGAGCTTCAATCAATTATCCTCCAATGGTGTCTCATTTTCAGTTACTTTATGATCTTGCTTTAGCATTGTGTTCAAGAATGCCTGCGCGCATAAGTTCTGAACCACGGAGTTCTCGACTGAAAGATAAGAGAAAGGGTGAAGGAGACATAGTAGTTAAAGAGCTATTTGTACAGGATGTCATTCAGAATAATGACCTGCTTCATGTTCTTGGAAAAGGGTCACCAATTGTCCTTCTACCCCAAAGTTCTTCAGACCTTTCTGTTTGTTCAAAATTACGTGTTGGTTCACAGTCAAGAGTAAACCCTGGCTTTTTGCCGGCCTCATACAATCTGAAGGAAGAAATGAAATCCTCAGGTTCAGTTTCTGATGGTCTCATGATAGACGGGCAGCAGGTTAAAGGTTTCTATTCCGTGAGAGGAAAACTTGCGTCTCTAAGTGAAAGTAATAGTCTTCACCCTTTAAGTGGATGTAACAATGTATGCGGCCTGAATTTAAAGAGGTCGAACTTGAGCTGTGAAAGAGAAAGTCATGTCGAAGGGGAGGGGTTGTCAGATCAGAGACTGTTTTCTTGTGTTACATGTGGAATTTTGAGCTTTGCTTGTGTTGCTATTATTCAACCAACAGAAGAAGCAGCCAGATATCTTATGTCAGCAGATTGTAGTTTTTTCAATGATTGGGTTGTTGGATCTGGATTGGGTAGTAAGGCGTTCTCGGGTGTAACTGGGGATCCAGTTACTTCAAATAATGCTCCTTGCACAGGATTGGAGGAAAACAATGCCCCTAATGGTTTATATGATGTGCCTGTTCACTCTGGTAATTATCAAATCCAGGTGGTTGATAAAAGAAATGAAGTGGTTTCAAATACTGAAATGCCGAGAGAGACTTCAGCTCTTGGTCTATTAGCTTTGAATTATGGAAATTCATCTGACTTGGAGGAAGATCAGGTTGAAATAGATGCTCCTGTCTGTTCTGATGAACCGAAGGTGACAAACTGTTCTTTGGAAAGTAGATATAGAGACCAAAGTGCTAGTCTTCCTTATGGTGGTACAAGTGGGGTTCACAGTCCCTCATCAGCAGGATCTGATTGTGAGAAAGAACTTCGTCTCCAAAATTTTGATCACTATGCTACAGATGGACGTAAAATAGCAAATTTCAAGGATACCAGCCATCAAGACATTGACAGCTCTGCTGATTTCAGAACTAATAATTATGCTTCCACAGCAACAGGTTTTGGTAAGGCTATCGTACCAATACAGAAAACAAACACGTCATGTCATCCAGGATGCGATGAAGACTCTTCTAGAATGCATGTCTTCTGCCTTGAGCATGCTGTAGAGGTTCAGCAGCAGCTTCGTTCAATTGGAGGTGTCCATATTTTACTCCTTTGTCATCCAGACTACCCAAGGATAGAGGAGGAAGCCAAATCAATGGCAGAAGAGCTGGGAATAAGTTATCTCTGGAATGATATGGCATTCATGAATGCCACCAAGGAAGATGAGACGAGGATTCAGTTAGCTCTGGATAGCGAGGATGCCATTGCTGGGAACGGGGACTGGGCTGTAAAGTTGGGGATCAATCTCTTCTACAGTGCCAGCCTTAGCCGCTCTCATCTTTATAGTAAGCAGATGCCATACAATTCTGTTATATACAAAGCATTTGGCCGGAGCTCTCCTGCTAGTTCACCAACAAGAATTGATGTCTATGGGAGGAGAGGTGGCAAGCCAAAAAAGGTAGTGGCAGGGAAATGGTGTGGTAAAGTATGGATGTCGAATCAAGTTCATTCTTTTCTAGTAAAAAGGGATCCTGAGGAAGAAGTAGAAGTAGCAGAAGATGAAGAAGAGCGGTCCTTCCGTGCTTGGGCAATGCCAGAAGAGGATGATGAGGTAAAATCAGAAATCACACGCAGAACTGAGAAGACAGTTAAGAAGTATGCTAGGAAGAGGAAAATGGCTGCAGATACTCGGACAGCCAAGAAAGCCAAATGTTTTGAGAAAGAGGATGCAGTTTCAGATTATTCATTAGATGACAACTCTCATCAGCAGCAAAGGAGGCTTCCTAAGAGCAAGCAAGCCAAATATATTGAGAGAGGTCGAACCAAGAAAGCCAAGTGTATTGAGACACATGATGCATTTTCAGATGATTCAATGCAAGAGGATGATTCTCATCAGCAAAATGGGAGGATTCTTCACAGCGAGCAAGTTGAGTATATTGGGAGAAGTGATGTTTCAGATGATTCTGTGGGAATTGATTCTCATCAGCAGCATAGGAGGACTGCTAAAAGTAAGCAATTCAAACCAGTGGAAACAGATGTGGTTTCAGATGATTCGTTTGAGGGTAGTTCTCATCAGCCGCGGAGGGTCCTTAGAAGCAAGACAACTAAATGCACTGGGAGAGAAAATTTGATTTCGGAGGATGTTCGCGGGTTTAGTTCTCATCAGCAACGAAGGAGCATTTCTAGAAGCAAGCAGGCCAGAGCCAGATTCATGGAGAGAGAAGATACCTCTCTGGATGAAACACCGGAAGATAATTCTCAGCAGCATAAGAGAAATCTTCGAAACAAGCAAACCAAACCAGAGACCCGTGGGAAAATGAGACAAGAAACCTCTCGCCAAGTGAAACAAGGAACTGCTCCTCTTGCGAAACAAGGTACTCGCACTCTGAGAAATCAACAAACCCCTCAGCAAACGAAGAAGCAGACACCTAGGCTCCGAAATAATCAATCTGAGCAGAATAATCAGTCTGAGCAGAACAGCTTTGATTTATATGCTGAAGATGAGACAGAAGGTGGGCCTAGCACGCGCCTTAGAAAAAGAGCTCCTAAGCCCTCAAAAGTCCCTGGAACCAAATCAAAAGAGCAGCAACAAACCGCTAGGAAAAAGGCAAAGAATGCTTCAGCAGGGAAGACTCAGGCTGGCCGAAATGAAACAAAGAGGGAAGAGGATGGAGAATTCGTGTGTGATCTTGAGGGGTGTACCATGAGTTTTGCCTCGAAGCATGAGCTTTCCCTCCACAAAAGAAACATATGTCCAGTCAAGGGGTGCGGAAAGAAATTCTTCTCGCACAAGTATCTGGTGCAACATCGCCGAGTTCACACAGATCGATCGTCCCCTTCGGTGTCCTTGGAAGGGTTGCAAGATGACATTCAAGTGGGCATGGTCTCGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008214 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009791 GO:0009826 GO:0009892 GO:0009987 GO:0010033 GO:0010228 GO:0010605 GO:0010639 GO:0014070 GO:0016043 GO:0016049 GO:0016569 GO:0016570 GO:0016577 GO:0019222 GO:0019538 GO:0022414 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032989 GO:0033043 GO:0033044 GO:0033169 GO:0033993 GO:0035065 GO:0035067 GO:0036211 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051276 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0099402 GO:1901564 GO:1901700 GO:1901983 GO:1901984 GO:1902275 GO:1905268 GO:2000756 GO:2000757 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JmjC JmjN zf-C2H2

Protein Analysis

1423

Amino Acids

158.38

Weight (kDa)

8.49

Isoelectric Point (pI)

56.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48430 AT3G48430
fragaria_vesca	FvH4_5g07090 FvH4_5g07090 FvH4_5g07090
malus_domestica	MD06G1159300.v1.1 MD14G1165600.v1.1
prunus_persica	Prupe.5G159200_v2.0.a1
pyrus_communis	pycom06g14210 pycom14g13810
rosa_chinensis	RchiOBHm_Chr7g0191461
rosa_laevigata	RLG00000004448
rosa_multiflora	Rmu_sc0002661.1_g000009
rosa_roxburghii	Rroxscaffold_157G00438400 Rroxscaffold_3G00263790
rosa_rugosa	Rorug06G0510400
rosa_samantha	Rh7AG118500 Rh7BG120500 Rh7CG123300 Rh7DG121400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1305, 1483
AccB1I	GGYRCC	2 cut(s)	181, 919
AccBSI	CCGCTC	2 cut(s)	2706, 2944
AccII	CGCG	4 cut(s)	1189, 3454, 3522, 3901
AclWI	GGATC	8 cut(s)	104, 1795, 1823, 1836, 2188, 2681, 2897, 2910
AcoI	YGGCCR	2 cut(s)	2761, 4015
AcsI	RAATTY	9 cut(s)	380, 1591, 1686, 2020, 2212, 2251, 3499, 4049, 4151
AcuI	CTGAAG	6 cut(s)	945, 1335, 1454, 1971, 3891, 3978
AcyI	GRCGYC	1 cut(s)	920
AflIII	ACRYGT	3 cut(s)	1378, 1679, 2367
AgeI	ACCGGT	1 cut(s)	222
AhlI	ACTAGT	1 cut(s)	572
AjiI	CACGTC	2 cut(s)	795, 2370
AjnI	CCWGG	5 cut(s)	375, 1405, 1929, 2380, 3937
AloI	GAACNNNNNNTCC	2 cut(s)	2190, 2222
Alw21I	GWGCWC	3 cut(s)	366, 2771, 3919
AlwI	GGATC	8 cut(s)	104, 1795, 1823, 1836, 2188, 2681, 2897, 2910
AlwNI	CAGNNNCTG	3 cut(s)	1466, 1663, 2183
Ama87I	CYCGRG	4 cut(s)	77, 237, 680, 1813
AoxI	GGCC	9 cut(s)	262, 323, 329, 1419, 1585, 2761, 3570, 3890, 4015
ApaI	GGGCCC	1 cut(s)	266
ApoI	RAATTY	9 cut(s)	380, 1591, 1686, 2020, 2212, 2251, 3499, 4049, 4151
ArsI	GACNNNNNNTTYG	2 cut(s)	2116, 2148
AsiGI	ACCGGT	1 cut(s)	222
Asp700I	GAANNNNTTC	3 cut(s)	45, 3349, 4154
AspA2I	CCTAGG	1 cut(s)	3803
AspLEI	GCGC	4 cut(s)	922, 1189, 1191, 3903
AspS9I	GGNCC	7 cut(s)	262, 263, 330, 745, 2946, 3460, 3890
AsuC2I	CCSGG	5 cut(s)	38, 292, 528, 681, 682
AsuHPI	GGTGA	6 cut(s)	617, 1250, 1314, 1547, 2098, 2775
AsuII	TTCGAA	1 cut(s)	3655
AvaI	CYCGRG	4 cut(s)	77, 237, 680, 1813
AvaII	GGWCC	3 cut(s)	745, 2946, 3460
AvrII	CCTAGG	1 cut(s)	3803
AxyI	CCTNAGG	2 cut(s)	1453, 2907
BaeGI	GKGCMC	1 cut(s)	266
BamHI	GGATCC	2 cut(s)	1828, 2902
BanI	GGYRCC	2 cut(s)	181, 919
BanII	GRGCYC	3 cut(s)	266, 2771, 3919
BbsI	GAAGAC	9 cut(s)	206, 797, 911, 1544, 2126, 2400, 2407, 3023, 4010
Bbv12I	GWGCWC	3 cut(s)	366, 2771, 3919
BbvCI	CCTCAGC	1 cut(s)	3780
BccI	CCATC	6 cut(s)	691, 910, 1463, 2228, 2277, 4037
BceAI	ACGGC	1 cut(s)	344
BcgI	CGANNNNNNTGC	4 cut(s)	505, 539, 2435, 2469
BciT130I	CCWGG	5 cut(s)	377, 1407, 1931, 2382, 3939
BciVI	GTATCC	1 cut(s)	2254
BclI	TGATCA	1 cut(s)	2218
BcnI	CCSGG	5 cut(s)	38, 292, 528, 681, 682
BcuI	ACTAGT	1 cut(s)	572
BfmI	CTRYAG	5 cut(s)	955, 2229, 2433, 2686, 3054
BfoI	RGCGCY	1 cut(s)	923
BfuAI	ACCTGC	2 cut(s)	1305, 1483
BfuI	GTATCC	1 cut(s)	2254
BlnI	CCTAGG	1 cut(s)	3803
BmcAI	AGTACT	1 cut(s)	571
Bme18I	GGWCC	3 cut(s)	745, 2946, 3460
BmeT110I	CYCGRG	4 cut(s)	77, 237, 680, 1813
BmgBI	CACGTC	2 cut(s)	795, 2370
BmgT120I	GGNCC	7 cut(s)	262, 263, 330, 745, 2946, 3460, 3890
BmiI	GGNNCC	8 cut(s)	183, 264, 921, 1830, 2904, 3461, 3809, 3943
BmrI	ACTGGG	4 cut(s)	145, 1833, 2665, 3498
BmsI	GCATC	8 cut(s)	571, 1078, 2047, 2375, 2623, 2718, 3091, 3217
BmuI	ACTGGG	4 cut(s)	145, 1833, 2665, 3498
BpiI	GAAGAC	9 cut(s)	206, 797, 911, 1544, 2126, 2400, 2407, 3023, 4010
Bpu10I	CCTNAGC	3 cut(s)	2699, 3780, 3921
Bpu14I	TTCGAA	1 cut(s)	3655
BpuEI	CTTGAG	4 cut(s)	439, 1630, 2444, 4085
BpuMI	CCSGG	5 cut(s)	38, 292, 528, 681, 682
Bsa29I	ATCGAT	1 cut(s)	4201
BsaAI	YACGTR	1 cut(s)	1379
BsaBI	GATNNNNATC	2 cut(s)	3264, 3354
BsaHI	GRCGYC	1 cut(s)	920
BsaI	GGTCTC	4 cut(s)	1478, 2112, 3671, 4264
BsaWI	WCCGGW	2 cut(s)	222, 3619
Bse118I	RCCGGY	3 cut(s)	178, 222, 1417
Bse21I	CCTNAGG	2 cut(s)	1453, 2907
Bse3DI	GCAATG	3 cut(s)	1053, 2637, 2970
Bse8I	GATNNNNATC	2 cut(s)	3264, 3354
BseBI	CCWGG	5 cut(s)	377, 1407, 1931, 2382, 3939
BseCI	ATCGAT	1 cut(s)	4201
BseJI	GATNNNNATC	2 cut(s)	3264, 3354
BseMI	GCAATG	3 cut(s)	1053, 2637, 2970
BsePI	GCGCGC	1 cut(s)	1187
BseRI	GAGGAG	5 cut(s)	686, 848, 2528, 2824, 3723
BseSI	GKGCMC	1 cut(s)	266
BseYI	CCCAGC	4 cut(s)	273, 974, 2542, 2642
Bsh1236I	CGCG	4 cut(s)	1189, 3454, 3522, 3901
Bsh1285I	CGRYCG	1 cut(s)	4205
BshFI	GGCC	9 cut(s)	264, 325, 331, 1421, 1587, 2763, 3572, 3892, 4017
BshNI	GGYRCC	2 cut(s)	181, 919
BshTI	ACCGGT	1 cut(s)	222
BshVI	ATCGAT	1 cut(s)	4201
BsiEI	CGRYCG	1 cut(s)	4205
BsiHKAI	GWGCWC	3 cut(s)	366, 2771, 3919
BsiHKCI	CYCGRG	4 cut(s)	77, 237, 680, 1813
BsiSI	CCGG	9 cut(s)	38, 179, 223, 292, 528, 681, 1418, 2764, 3620
BslFI	GGGAC	7 cut(s)	602, 827, 992, 2151, 2666, 3920, 4192
BsmBI	CGTCTC	3 cut(s)	1536, 2210, 2594
BsmFI	GGGAC	7 cut(s)	602, 827, 992, 2151, 2666, 3920, 4192
BsmI	GAATGC	6 cut(s)	827, 1185, 2412, 2573, 2587, 3994
BsnI	GGCC	9 cut(s)	264, 325, 331, 1421, 1587, 2763, 3572, 3892, 4017
Bso31I	GGTCTC	4 cut(s)	1478, 2112, 3671, 4264
BsoBI	CYCGRG	4 cut(s)	77, 237, 680, 1813
Bsp119I	TTCGAA	1 cut(s)	3655
Bsp120I	GGGCCC	1 cut(s)	262
Bsp1286I	GDGCHC	4 cut(s)	266, 366, 2771, 3919
Bsp1407I	TGTACA	1 cut(s)	1270
Bsp19I	CCATGG	1 cut(s)	50
BspANI	GGCC	9 cut(s)	264, 325, 331, 1421, 1587, 2763, 3572, 3892, 4017
BspDI	ATCGAT	1 cut(s)	4201
BspFNI	CGCG	4 cut(s)	1189, 3454, 3522, 3901
BspHI	TCATGA	2 cut(s)	1476, 2577
BspLI	GGNNCC	8 cut(s)	183, 264, 921, 1830, 2904, 3461, 3809, 3943
BspMAI	CTGCAG	2 cut(s)	959, 3058
BspMI	ACCTGC	2 cut(s)	1305, 1483
BspPI	GGATC	8 cut(s)	104, 1795, 1823, 1836, 2188, 2681, 2897, 2910
BspQI	GCTCTTC	2 cut(s)	2532, 2934
BspT104I	TTCGAA	1 cut(s)	3655
BspT107I	GGYRCC	2 cut(s)	181, 919
BspTNI	GGTCTC	4 cut(s)	1478, 2112, 3671, 4264
BsrBI	CCGCTC	2 cut(s)	2706, 2944
BsrDI	GCAATG	3 cut(s)	1053, 2637, 2970
BsrFI	RCCGGY	3 cut(s)	178, 222, 1417
BsrGI	TGTACA	1 cut(s)	1270
BssAI	RCCGGY	3 cut(s)	178, 222, 1417
BssHII	GCGCGC	1 cut(s)	1187
BssNI	GRCGYC	1 cut(s)	920
BssT1I	CCWWGG	6 cut(s)	50, 895, 2504, 2589, 3803, 4221
Bst2UI	CCWGG	5 cut(s)	377, 1407, 1931, 2382, 3939
Bst4CI	ACNGT	8 cut(s)	487, 913, 1392, 1665, 2096, 2165, 2690, 3022
Bst6I	CTCTTC	8 cut(s)	404, 2404, 2532, 2687, 2934, 2967, 3035, 4032
BstACI	GRCGYC	1 cut(s)	920
BstAPI	GCANNNNNTGC	2 cut(s)	1088, 3989
BstAUI	TGTACA	1 cut(s)	1270
BstBAI	YACGTR	1 cut(s)	1379
BstBI	TTCGAA	1 cut(s)	3655
BstDSI	CCRYGG	5 cut(s)	50, 326, 1205, 3452, 3682
BstEII	GGTNACC	1 cut(s)	1320
BstENI	CCTNNNNNAGG	1 cut(s)	1857
BstFNI	CGCG	4 cut(s)	1189, 3454, 3522, 3901
BstH2I	RGCGCY	1 cut(s)	923
BstHHI	GCGC	4 cut(s)	922, 1189, 1191, 3903
BstMCI	CGRYCG	1 cut(s)	4205
BstNI	CCWGG	5 cut(s)	377, 1407, 1931, 2382, 3939
BstNSI	RCATGY	5 cut(s)	526, 740, 1683, 2414, 2432
BstPI	GGTNACC	1 cut(s)	1320
BstSFI	CTRYAG	5 cut(s)	955, 2229, 2433, 2686, 3054
BstSLI	GKGCMC	1 cut(s)	266
BstUI	CGCG	4 cut(s)	1189, 3454, 3522, 3901
BstV2I	GAAGAC	9 cut(s)	206, 797, 911, 1544, 2126, 2400, 2407, 3023, 4010
BstX2I	RGATCY	5 cut(s)	109, 1787, 1828, 2180, 2902
BstXI	CCANNNNNNTGG	2 cut(s)	2530, 3586
BstYI	RGATCY	5 cut(s)	109, 1787, 1828, 2180, 2902
Bsu15I	ATCGAT	1 cut(s)	4201
Bsu36I	CCTNAGG	2 cut(s)	1453, 2907
BsuI	GTATCC	1 cut(s)	2254
BsuRI	GGCC	9 cut(s)	264, 325, 331, 1421, 1587, 2763, 3572, 3892, 4017
BsuTUI	ATCGAT	1 cut(s)	4201
BtgI	CCRYGG	5 cut(s)	50, 326, 1205, 3452, 3682
BtgZI	GCGATG	2 cut(s)	2403, 4166
BtrI	CACGTC	2 cut(s)	795, 2370
BtsIMutI	CAGTG	7 cut(s)	227, 552, 1011, 2695, 3405, 3486, 4264
BveI	ACCTGC	2 cut(s)	1305, 1483
CaiI	CAGNNNCTG	3 cut(s)	1466, 1663, 2183
CciI	TCATGA	2 cut(s)	1476, 2577
CfoI	GCGC	4 cut(s)	922, 1189, 1191, 3903
Cfr10I	RCCGGY	3 cut(s)	178, 222, 1417
Cfr13I	GGNCC	7 cut(s)	262, 263, 330, 745, 2946, 3460, 3890
Cfr42I	CCGCGG	1 cut(s)	3455
Cfr9I	CCCGGG	1 cut(s)	680
ClaI	ATCGAT	1 cut(s)	4201
CseI	GACGC	2 cut(s)	824, 1518
CspAI	ACCGGT	1 cut(s)	222
CspCI	CAANNNNNGTGG	2 cut(s)	74, 109
DinI	GGCGCC	1 cut(s)	921
DraI	TTTAAA	2 cut(s)	130, 1596
EaeI	YGGCCR	2 cut(s)	2761, 4015
Eam1104I	CTCTTC	8 cut(s)	404, 2404, 2532, 2687, 2934, 2967, 3035, 4032
EarI	CTCTTC	8 cut(s)	404, 2404, 2532, 2687, 2934, 2967, 3035, 4032
EciI	GGCGGA	1 cut(s)	113
Ecl136II	GAGCTC	2 cut(s)	2769, 3917
Eco130I	CCWWGG	6 cut(s)	50, 895, 2504, 2589, 3803, 4221
Eco24I	GRGCYC	3 cut(s)	266, 2771, 3919
Eco31I	GGTCTC	4 cut(s)	1478, 2112, 3671, 4264
Eco32I	GATATC	1 cut(s)	1742
Eco47I	GGWCC	3 cut(s)	745, 2946, 3460
Eco53kI	GAGCTC	2 cut(s)	2769, 3917
Eco57I	CTGAAG	6 cut(s)	945, 1335, 1454, 1971, 3891, 3978
Eco81I	CCTNAGG	2 cut(s)	1453, 2907
Eco88I	CYCGRG	4 cut(s)	77, 237, 680, 1813
Eco91I	GGTNACC	1 cut(s)	1320
EcoICRI	GAGCTC	2 cut(s)	2769, 3917
EcoNI	CCTNNNNNAGG	1 cut(s)	1857
EcoO109I	RGGNCCY	1 cut(s)	3460
EcoO65I	GGTNACC	1 cut(s)	1320
EcoRI	GAATTC	1 cut(s)	4049
EcoRII	CCWGG	5 cut(s)	375, 1405, 1929, 2380, 3937
EcoRV	GATATC	1 cut(s)	1742
EcoT14I	CCWWGG	6 cut(s)	50, 895, 2504, 2589, 3803, 4221
EcoT22I	ATGCAT	2 cut(s)	2412, 3232
EcoT38I	GRGCYC	3 cut(s)	266, 2771, 3919
EgeI	GGCGCC	1 cut(s)	921
EheI	GGCGCC	1 cut(s)	921
ErhI	CCWWGG	6 cut(s)	50, 895, 2504, 2589, 3803, 4221
Esp3I	CGTCTC	3 cut(s)	1536, 2210, 2594
FalI	AAGNNNNNCTT	4 cut(s)	401, 433, 4139, 4171
FaqI	GGGAC	7 cut(s)	602, 827, 992, 2151, 2666, 3920, 4192
FauI	CCCGC	1 cut(s)	3515
FauNDI	CATATG	2 cut(s)	777, 4124
FbaI	TGATCA	1 cut(s)	2218
FriOI	GRGCYC	3 cut(s)	266, 2771, 3919
GlaI	GCGC	4 cut(s)	921, 1188, 1190, 3902
GsaI	CCCAGC	4 cut(s)	277, 978, 2546, 2646
HaeII	RGCGCY	1 cut(s)	923
HaeIII	GGCC	9 cut(s)	264, 325, 331, 1421, 1587, 2763, 3572, 3892, 4017
HapII	CCGG	9 cut(s)	38, 179, 223, 292, 528, 681, 1418, 2764, 3620
HgaI	GACGC	2 cut(s)	824, 1518
HhaI	GCGC	4 cut(s)	922, 1189, 1191, 3903
Hin1I	GRCGYC	1 cut(s)	920
Hin6I	GCGC	4 cut(s)	920, 1187, 1189, 3901
HinP1I	GCGC	4 cut(s)	920, 1187, 1189, 3901
HpaII	CCGG	9 cut(s)	38, 179, 223, 292, 528, 681, 1418, 2764, 3620
HphI	GGTGA	6 cut(s)	617, 1250, 1314, 1547, 2098, 2775
Hpy166II	GTNNAC	8 cut(s)	337, 1388, 1402, 1909, 2161, 2783, 4074, 4192
Hpy8I	GTNNAC	8 cut(s)	337, 1388, 1402, 1909, 2161, 2783, 4074, 4192
Hpy99I	CGWCG	1 cut(s)	1104
HpyCH4III	ACNGT	8 cut(s)	487, 913, 1392, 1665, 2096, 2165, 2690, 3022
HpyCH4IV	ACGT	4 cut(s)	794, 1378, 2239, 2369
HpySE526I	ACGT	4 cut(s)	794, 1378, 2239, 2369
Hsp92I	GRCGYC	1 cut(s)	920
HspAI	GCGC	4 cut(s)	920, 1187, 1189, 3901
KasI	GGCGCC	1 cut(s)	919
KroI	GCCGGC	1 cut(s)	1417
KroNI	GCCGGC	1 cut(s)	1419
Ksp22I	TGATCA	1 cut(s)	2218
KspI	CCGCGG	1 cut(s)	3455
LguI	GCTCTTC	2 cut(s)	2532, 2934
LmnI	GCTCC	9 cut(s)	79, 782, 1855, 2065, 2766, 3549, 3736, 3813, 3922
LweI	GCATC	8 cut(s)	571, 1078, 2047, 2375, 2623, 2718, 3091, 3217
MaeII	ACGT	4 cut(s)	794, 1378, 2239, 2369
MbiI	CCGCTC	2 cut(s)	2706, 2944
MfeI	CAATTG	3 cut(s)	207, 1326, 2460
MflI	RGATCY	5 cut(s)	109, 1787, 1828, 2180, 2902
MhlI	GDGCHC	4 cut(s)	266, 366, 2771, 3919
Mly113I	GGCGCC	1 cut(s)	920
MlyI	GAGTC	3 cut(s)	592, 2390, 4000
MmeI	TCCRAC	1 cut(s)	1765
Mph1103I	ATGCAT	2 cut(s)	2412, 3232
MroNI	GCCGGC	1 cut(s)	1417
MroXI	GAANNNNTTC	3 cut(s)	45, 3349, 4154
MseI	TTAA	7 cut(s)	129, 1032, 1257, 1497, 1562, 1595, 3024
MslI	CAYNNNNRTG	1 cut(s)	4247
MspA1I	CMGCKG	3 cut(s)	454, 723, 3454
MspI	CCGG	9 cut(s)	38, 179, 223, 292, 528, 681, 1418, 2764, 3620
MunI	CAATTG	3 cut(s)	207, 1326, 2460
Mva1269I	GAATGC	6 cut(s)	827, 1185, 2412, 2573, 2587, 3994
MvaI	CCWGG	5 cut(s)	377, 1407, 1931, 2382, 3939
MvnI	CGCG	4 cut(s)	1189, 3454, 3522, 3901
NaeI	GCCGGC	1 cut(s)	1419
NarI	GGCGCC	1 cut(s)	920
NciI	CCSGG	5 cut(s)	38, 292, 528, 681, 682
NcoI	CCATGG	1 cut(s)	50
NdeI	CATATG	2 cut(s)	777, 4124
NgoMIV	GCCGGC	1 cut(s)	1417
NlaIV	GGNNCC	8 cut(s)	183, 264, 921, 1830, 2904, 3461, 3809, 3943
NmeAIII	GCCGAG	3 cut(s)	834, 2001, 4211
NmuCI	GTSAC	5 cut(s)	225, 595, 988, 1320, 2086
NsiI	ATGCAT	2 cut(s)	2412, 3232
NspI	RCATGY	5 cut(s)	526, 740, 1683, 2414, 2432
NspV	TTCGAA	1 cut(s)	3655
PaeI	GCATGC	1 cut(s)	2432
PagI	TCATGA	2 cut(s)	1476, 2577
PauI	GCGCGC	1 cut(s)	1187
PciI	ACATGT	1 cut(s)	1679
PciSI	GCTCTTC	2 cut(s)	2532, 2934
PcsI	WCGNNNNNNNCGW	1 cut(s)	1213
PctI	GAATGC	6 cut(s)	827, 1185, 2412, 2573, 2587, 3994
PdiI	GCCGGC	1 cut(s)	1419
PdmI	GAANNNNTTC	3 cut(s)	45, 3349, 4154
PfoI	TCCNGGA	2 cut(s)	375, 2380
PinAI	ACCGGT	1 cut(s)	222
Ple19I	CGATCG	1 cut(s)	4205
PleI	GAGTC	3 cut(s)	592, 2390, 4000
PluTI	GGCGCC	1 cut(s)	923
PpsI	GAGTC	3 cut(s)	592, 2390, 4000
Ppu21I	YACGTR	1 cut(s)	1379
PpuMI	RGGWCCY	1 cut(s)	3460
PscI	ACATGT	1 cut(s)	1679
Psp124BI	GAGCTC	2 cut(s)	2771, 3919
Psp5II	RGGWCCY	1 cut(s)	3460
Psp6I	CCWGG	5 cut(s)	375, 1405, 1929, 2380, 3937
PspEI	GGTNACC	1 cut(s)	1320
PspFI	CCCAGC	4 cut(s)	273, 974, 2542, 2642
PspGI	CCWGG	5 cut(s)	375, 1405, 1929, 2380, 3937
PspN4I	GGNNCC	8 cut(s)	183, 264, 921, 1830, 2904, 3461, 3809, 3943
PspOMI	GGGCCC	1 cut(s)	262
PspPI	GGNCC	7 cut(s)	262, 263, 330, 745, 2946, 3460, 3890
PspPPI	RGGWCCY	1 cut(s)	3460
PstI	CTGCAG	2 cut(s)	959, 3058
PstNI	CAGNNNCTG	3 cut(s)	1466, 1663, 2183
PsuI	RGATCY	5 cut(s)	109, 1787, 1828, 2180, 2902
PteI	GCGCGC	1 cut(s)	1187
PvuI	CGATCG	1 cut(s)	4205
PvuII	CAGCTG	1 cut(s)	723
RseI	CAYNNNNRTG	1 cut(s)	4247
SacI	GAGCTC	2 cut(s)	2771, 3919
SacII	CCGCGG	1 cut(s)	3455
SapI	GCTCTTC	2 cut(s)	2532, 2934
SaqAI	TTAA	7 cut(s)	129, 1032, 1257, 1497, 1562, 1595, 3024
Sau96I	GGNCC	7 cut(s)	262, 263, 330, 745, 2946, 3460, 3890
ScaI	AGTACT	1 cut(s)	571
SchI	GAGTC	3 cut(s)	592, 2390, 4000
SduI	GDGCHC	4 cut(s)	266, 366, 2771, 3919
SfaNI	GCATC	8 cut(s)	571, 1078, 2047, 2375, 2623, 2718, 3091, 3217
SfcI	CTRYAG	5 cut(s)	955, 2229, 2433, 2686, 3054
SfoI	GGCGCC	1 cut(s)	921
Sfr303I	CCGCGG	1 cut(s)	3455
SfuI	TTCGAA	1 cut(s)	3655
SgrAI	CRCCGGYG	1 cut(s)	178
SgrBI	CCGCGG	1 cut(s)	3455
SinI	GGWCC	3 cut(s)	745, 2946, 3460
SmaI	CCCGGG	1 cut(s)	682
SmiMI	CAYNNNNRTG	1 cut(s)	4247
SmlI	CTYRAG	4 cut(s)	418, 1609, 2423, 4064
SmoI	CTYRAG	4 cut(s)	418, 1609, 2423, 4064
SpeI	ACTAGT	1 cut(s)	572
SphI	GCATGC	1 cut(s)	2432
SspDI	GGCGCC	1 cut(s)	919
SstI	GAGCTC	2 cut(s)	2771, 3919
StyI	CCWWGG	6 cut(s)	50, 895, 2504, 2589, 3803, 4221
TaaI	ACNGT	8 cut(s)	487, 913, 1392, 1665, 2096, 2165, 2690, 3022
TaiI	ACGT	4 cut(s)	797, 1381, 2242, 2372
TatI	WGTACW	2 cut(s)	569, 1270
TauI	GCSGC	7 cut(s)	8, 178, 187, 454, 1587, 2706, 3454
Tru1I	TTAA	7 cut(s)	129, 1032, 1257, 1497, 1562, 1595, 3024
Tru9I	TTAA	7 cut(s)	129, 1032, 1257, 1497, 1562, 1595, 3024
TscAI	CASTG	6 cut(s)	234, 552, 1018, 2695, 3405, 3493
TseFI	GTSAC	5 cut(s)	225, 595, 988, 1320, 2086
Tsp45I	GTSAC	5 cut(s)	225, 595, 988, 1320, 2086
TspGWI	ACGGA	4 cut(s)	171, 1222, 1501, 2942
TspMI	CCCGGG	1 cut(s)	680
TspRI	CASTG	6 cut(s)	234, 552, 1018, 2695, 3405, 3493
VpaK11BI	GGWCC	3 cut(s)	745, 2946, 3460
XagI	CCTNNNNNAGG	1 cut(s)	1857
XapI	RAATTY	9 cut(s)	380, 1591, 1686, 2020, 2212, 2251, 3499, 4049, 4151
XbaI	TCTAGA	2 cut(s)	2402, 3557
XceI	RCATGY	5 cut(s)	526, 740, 1683, 2414, 2432
XmaI	CCCGGG	1 cut(s)	680
XmaJI	CCTAGG	1 cut(s)	3803
XmnI	GAANNNNTTC	3 cut(s)	45, 3349, 4154
ZrmI	AGTACT	1 cut(s)	571
Zsp2I	ATGCAT	2 cut(s)	2412, 3232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.