lysine-specific demethylase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G48430 AT3G48430 |
| fragaria_vesca | FvH4_5g07090 FvH4_5g07090 FvH4_5g07090 |
| malus_domestica | MD06G1159300.v1.1 MD14G1165600.v1.1 |
| prunus_persica | Prupe.5G159200_v2.0.a1 |
| pyrus_communis | pycom06g14210 pycom14g13810 |
| rosa_chinensis | RchiOBHm_Chr7g0191461 |
| rosa_laevigata | RLG00000004448 |
| rosa_multiflora | Rmu_sc0002661.1_g000009 |
| rosa_roxburghii | Rroxscaffold_157G00438400 Rroxscaffold_3G00263790 |
| rosa_rugosa | Rorug06G0510400 |
| rosa_samantha | Rh7AG118500 Rh7BG120500 Rh7CG123300 Rh7DG121400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 936, 1423 |
| AccB1I | GGYRCC | 5 cut(s) | 166, 551, 2486, 4263, 4337 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 3914, 4370 |
| AccBSI | CCGCTC | 3 cut(s) | 176, 342, 2724 |
| AccII | CGCG | 5 cut(s) | 223, 815, 2524, 3928, 4456 |
| AccIII | TCCGGA | 1 cut(s) | 61 |
| AclWI | GGATC | 9 cut(s) | 89, 741, 1748, 1865, 2285, 2699, 2928, 3850, 3863 |
| AcoI | YGGCCR | 1 cut(s) | 696 |
| AcsI | RAATTY | 5 cut(s) | 968, 1623, 3451, 3595, 4199 |
| AcuI | CTGAAG | 3 cut(s) | 933, 1323, 4032 |
| AcvI | CACGTG | 1 cut(s) | 727 |
| AcyI | GRCGYC | 1 cut(s) | 582 |
| AfeI | AGCGCT | 1 cut(s) | 1552 |
| AflII | CTTAAG | 1 cut(s) | 3734 |
| AflIII | ACRYGT | 4 cut(s) | 677, 1366, 1616, 4170 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2816 |
| AjiI | CACGTC | 1 cut(s) | 2177 |
| AleI | CACNNNNGTG | 2 cut(s) | 1182, 4335 |
| Alw21I | GWGCWC | 4 cut(s) | 351, 1179, 4124, 4320 |
| Alw44I | GTGCAC | 2 cut(s) | 1175, 4120 |
| AlwI | GGATC | 9 cut(s) | 89, 741, 1748, 1865, 2285, 2699, 2928, 3850, 3863 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2813, 3116 |
| Ama87I | CYCGRG | 1 cut(s) | 668 |
| Aor13HI | TCCGGA | 1 cut(s) | 61 |
| Aor51HI | AGCGCT | 1 cut(s) | 1552 |
| ApaLI | GTGCAC | 2 cut(s) | 1175, 4120 |
| ApoI | RAATTY | 5 cut(s) | 968, 1623, 3451, 3595, 4199 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2254, 2286 |
| AsiSI | GCGATCGC | 1 cut(s) | 4454 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 4202 |
| AspLEI | GCGC | 3 cut(s) | 223, 1553, 1924 |
| AspS9I | GGNCC | 8 cut(s) | 81, 230, 248, 310, 1775, 2810, 3197, 3917 |
| AsuC2I | CCSGG | 5 cut(s) | 277, 304, 513, 669, 670 |
| AsuHPI | GGTGA | 7 cut(s) | 899, 900, 1238, 2109, 2632, 3046, 3257 |
| AsuII | TTCGAA | 1 cut(s) | 3292 |
| AsuNHI | GCTAGC | 1 cut(s) | 2795 |
| AvaI | CYCGRG | 1 cut(s) | 668 |
| AvaII | GGWCC | 3 cut(s) | 1775, 2810, 3197 |
| AxyI | CCTNAGG | 1 cut(s) | 2814 |
| BaeGI | GKGCMC | 6 cut(s) | 798, 1179, 2491, 4124, 4268, 4342 |
| BalI | TGGCCA | 1 cut(s) | 698 |
| BamHI | GGATCC | 1 cut(s) | 3855 |
| BanI | GGYRCC | 5 cut(s) | 166, 551, 2486, 4263, 4337 |
| BanII | GRGCYC | 2 cut(s) | 49, 4309 |
| BbrPI | CACGTG | 1 cut(s) | 727 |
| BbsI | GAAGAC | 5 cut(s) | 785, 899, 3818, 4040, 4424 |
| Bbv12I | GWGCWC | 4 cut(s) | 351, 1179, 4124, 4320 |
| BbvCI | CCTCAGC | 1 cut(s) | 3900 |
| BccI | CCATC | 7 cut(s) | 572, 1500, 1811, 2150, 2680, 3150, 3546 |
| BceAI | ACGGC | 5 cut(s) | 615, 794, 3786, 3807, 4389 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 241, 275, 4214, 4248 |
| BclI | TGATCA | 1 cut(s) | 3457 |
| BcnI | CCSGG | 5 cut(s) | 277, 304, 513, 669, 670 |
| BfaI | CTAG | 8 cut(s) | 561, 1151, 2061, 2421, 2796, 2945, 3051, 3921 |
| BfmI | CTRYAG | 7 cut(s) | 943, 2286, 2451, 2704, 2805, 3069, 3728 |
| BfoI | RGCGCY | 1 cut(s) | 1554 |
| BfrI | CTTAAG | 1 cut(s) | 3734 |
| BfuAI | ACCTGC | 2 cut(s) | 936, 1423 |
| BlpI | GCTNAGC | 1 cut(s) | 533 |
| BmcAI | AGTACT | 1 cut(s) | 1525 |
| Bme18I | GGWCC | 3 cut(s) | 1775, 2810, 3197 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2816 |
| BmeT110I | CYCGRG | 1 cut(s) | 668 |
| BmgBI | CACGTC | 1 cut(s) | 2177 |
| BmgT120I | GGNCC | 8 cut(s) | 81, 230, 248, 310, 1775, 2810, 3197, 3917 |
| BmrI | ACTGGG | 3 cut(s) | 2570, 2683, 4431 |
| BmtI | GCTAGC | 1 cut(s) | 2799 |
| BmuI | ACTGGG | 3 cut(s) | 2570, 2683, 4431 |
| BpiI | GAAGAC | 5 cut(s) | 785, 899, 3818, 4040, 4424 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 622, 654 |
| BpmI | CTGGAG | 2 cut(s) | 2775, 4056 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2717, 3900 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 533 |
| Bpu14I | TTCGAA | 1 cut(s) | 3292 |
| BpuEI | CTTGAG | 3 cut(s) | 2462, 3149, 3545 |
| BpuMI | CCSGG | 5 cut(s) | 277, 304, 513, 669, 670 |
| BsaAI | YACGTR | 3 cut(s) | 678, 727, 1367 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2690, 3360 |
| BsaHI | GRCGYC | 1 cut(s) | 582 |
| BsaI | GGTCTC | 4 cut(s) | 319, 443, 642, 3761 |
| BsaWI | WCCGGW | 3 cut(s) | 61, 3709, 4383 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1224, 1254 |
| Bse118I | RCCGGY | 1 cut(s) | 163 |
| Bse1I | ACTGG | 8 cut(s) | 464, 1006, 2294, 2565, 2678, 4003, 4178, 4426 |
| Bse21I | CCTNAGG | 1 cut(s) | 2814 |
| Bse3DI | GCAATG | 6 cut(s) | 1041, 1522, 2167, 2655, 2979, 3243 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2690, 3360 |
| BseAI | TCCGGA | 1 cut(s) | 61 |
| BseJI | GATNNNNATC | 2 cut(s) | 2690, 3360 |
| BseMI | GCAATG | 6 cut(s) | 1041, 1522, 2167, 2655, 2979, 3243 |
| BseNI | ACTGG | 8 cut(s) | 464, 1006, 2294, 2565, 2678, 4003, 4178, 4426 |
| BseRI | GAGGAG | 6 cut(s) | 674, 836, 864, 2842, 2968, 3786 |
| BseSI | GKGCMC | 6 cut(s) | 798, 1179, 2491, 4124, 4268, 4342 |
| BseYI | CCCAGC | 5 cut(s) | 589, 962, 2096, 2660, 3837 |
| BsgI | GTGCAG | 2 cut(s) | 341, 4377 |
| Bsh1236I | CGCG | 5 cut(s) | 223, 815, 2524, 3928, 4456 |
| Bsh1285I | CGRYCG | 1 cut(s) | 4454 |
| BshNI | GGYRCC | 5 cut(s) | 166, 551, 2486, 4263, 4337 |
| BsiEI | CGRYCG | 1 cut(s) | 4454 |
| BsiHKAI | GWGCWC | 4 cut(s) | 351, 1179, 4124, 4320 |
| BsiHKCI | CYCGRG | 1 cut(s) | 668 |
| BsiSI | CCGG | 8 cut(s) | 62, 164, 277, 304, 513, 669, 3710, 4384 |
| BslFI | GGGAC | 4 cut(s) | 1761, 3094, 4239, 4329 |
| BsmBI | CGTCTC | 2 cut(s) | 590, 3218 |
| BsmFI | GGGAC | 4 cut(s) | 1761, 3094, 4239, 4329 |
| BsmI | GAATGC | 4 cut(s) | 2430, 4048, 4072, 4426 |
| Bso31I | GGTCTC | 4 cut(s) | 319, 443, 642, 3761 |
| BsoBI | CYCGRG | 1 cut(s) | 668 |
| Bsp119I | TTCGAA | 1 cut(s) | 3292 |
| Bsp13I | TCCGGA | 1 cut(s) | 61 |
| Bsp1407I | TGTACA | 1 cut(s) | 1781 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 533 |
| Bsp68I | TCGCGA | 1 cut(s) | 4456 |
| BspEI | TCCGGA | 1 cut(s) | 61 |
| BspFNI | CGCG | 5 cut(s) | 223, 815, 2524, 3928, 4456 |
| BspHI | TCATGA | 4 cut(s) | 736, 1404, 2923, 4240 |
| BspMAI | CTGCAG | 3 cut(s) | 947, 2809, 3732 |
| BspMI | ACCTGC | 2 cut(s) | 936, 1423 |
| BspOI | GCTAGC | 1 cut(s) | 2799 |
| BspPI | GGATC | 9 cut(s) | 89, 741, 1748, 1865, 2285, 2699, 2928, 3850, 3863 |
| BspQI | GCTCTTC | 1 cut(s) | 389 |
| BspT104I | TTCGAA | 1 cut(s) | 3292 |
| BspT107I | GGYRCC | 5 cut(s) | 166, 551, 2486, 4263, 4337 |
| BspTI | CTTAAG | 1 cut(s) | 3734 |
| BspTNI | GGTCTC | 4 cut(s) | 319, 443, 642, 3761 |
| BsrBI | CCGCTC | 3 cut(s) | 176, 342, 2724 |
| BsrDI | GCAATG | 6 cut(s) | 1041, 1522, 2167, 2655, 2979, 3243 |
| BsrFI | RCCGGY | 1 cut(s) | 163 |
| BsrGI | TGTACA | 1 cut(s) | 1781 |
| BsrI | ACTGG | 8 cut(s) | 464, 1006, 2294, 2565, 2678, 4003, 4178, 4426 |
| BssAI | RCCGGY | 1 cut(s) | 163 |
| BssNI | GRCGYC | 1 cut(s) | 582 |
| BssT1I | CCWWGG | 2 cut(s) | 375, 4268 |
| Bst6I | CTCTTC | 9 cut(s) | 389, 539, 2705, 2922, 3050, 3149, 3294, 3976, 4080 |
| BstACI | GRCGYC | 1 cut(s) | 582 |
| BstAFI | CTTAAG | 1 cut(s) | 3734 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3116 |
| BstAUI | TGTACA | 1 cut(s) | 1781 |
| BstBAI | YACGTR | 3 cut(s) | 678, 727, 1367 |
| BstBI | TTCGAA | 1 cut(s) | 3292 |
| BstDSI | CCRYGG | 1 cut(s) | 2522 |
| BstFNI | CGCG | 5 cut(s) | 223, 815, 2524, 3928, 4456 |
| BstH2I | RGCGCY | 1 cut(s) | 1554 |
| BstHHI | GCGC | 3 cut(s) | 223, 1553, 1924 |
| BstMCI | CGRYCG | 1 cut(s) | 4454 |
| BstNSI | RCATGY | 4 cut(s) | 511, 1620, 2432, 2450 |
| BstSFI | CTRYAG | 7 cut(s) | 943, 2286, 2451, 2704, 2805, 3069, 3728 |
| BstSLI | GKGCMC | 6 cut(s) | 798, 1179, 2491, 4124, 4268, 4342 |
| BstUI | CGCG | 5 cut(s) | 223, 815, 2524, 3928, 4456 |
| BstV2I | GAAGAC | 5 cut(s) | 785, 899, 3818, 4040, 4424 |
| BstX2I | RGATCY | 5 cut(s) | 94, 1753, 1870, 2290, 3855 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3676 |
| BstYI | RGATCY | 5 cut(s) | 94, 1753, 1870, 2290, 3855 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2814 |
| BtgI | CCRYGG | 1 cut(s) | 2522 |
| BtrI | CACGTC | 1 cut(s) | 2177 |
| BtsI | GCAGTG | 2 cut(s) | 4017, 4083 |
| BtsIMutI | CAGTG | 6 cut(s) | 468, 999, 1458, 2713, 4017, 4083 |
| BtuMI | TCGCGA | 1 cut(s) | 4456 |
| BveI | ACCTGC | 2 cut(s) | 936, 1423 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2813, 3116 |
| CciI | TCATGA | 4 cut(s) | 736, 1404, 2923, 4240 |
| CfoI | GCGC | 3 cut(s) | 223, 1553, 1924 |
| Cfr10I | RCCGGY | 1 cut(s) | 163 |
| Cfr13I | GGNCC | 8 cut(s) | 81, 230, 248, 310, 1775, 2810, 3197, 3917 |
| Cfr42I | CCGCGG | 1 cut(s) | 2525 |
| Cfr9I | CCCGGG | 1 cut(s) | 668 |
| CseI | GACGC | 3 cut(s) | 571, 889, 3573 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 59, 94, 529, 564, 4171, 4206 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2816 |
| EaeI | YGGCCR | 1 cut(s) | 696 |
| Eam1104I | CTCTTC | 9 cut(s) | 389, 539, 2705, 2922, 3050, 3149, 3294, 3976, 4080 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2816 |
| EarI | CTCTTC | 9 cut(s) | 389, 539, 2705, 2922, 3050, 3149, 3294, 3976, 4080 |
| EciI | GGCGGA | 1 cut(s) | 3391 |
| Eco130I | CCWWGG | 2 cut(s) | 375, 4268 |
| Eco147I | AGGCCT | 1 cut(s) | 2833 |
| Eco24I | GRGCYC | 2 cut(s) | 49, 4309 |
| Eco31I | GGTCTC | 4 cut(s) | 319, 443, 642, 3761 |
| Eco32I | GATATC | 2 cut(s) | 445, 1679 |
| Eco47I | GGWCC | 3 cut(s) | 1775, 2810, 3197 |
| Eco47III | AGCGCT | 1 cut(s) | 1552 |
| Eco57I | CTGAAG | 3 cut(s) | 933, 1323, 4032 |
| Eco72I | CACGTG | 1 cut(s) | 727 |
| Eco81I | CCTNAGG | 1 cut(s) | 2814 |
| Eco88I | CYCGRG | 1 cut(s) | 668 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1775, 2810 |
| EcoRI | GAATTC | 1 cut(s) | 3451 |
| EcoRV | GATATC | 2 cut(s) | 445, 1679 |
| EcoT14I | CCWWGG | 2 cut(s) | 375, 4268 |
| EcoT22I | ATGCAT | 4 cut(s) | 2329, 2430, 2776, 3584 |
| EcoT38I | GRGCYC | 2 cut(s) | 49, 4309 |
| ErhI | CCWWGG | 2 cut(s) | 375, 4268 |
| Esp3I | CGTCTC | 2 cut(s) | 590, 3218 |
| FaqI | GGGAC | 4 cut(s) | 1761, 3094, 4239, 4329 |
| FauI | CCCGC | 5 cut(s) | 181, 320, 2269, 3465, 3827 |
| FbaI | TGATCA | 1 cut(s) | 3457 |
| FriOI | GRGCYC | 2 cut(s) | 49, 4309 |
| FspBI | CTAG | 8 cut(s) | 561, 1151, 2061, 2421, 2796, 2945, 3051, 3921 |
| GlaI | GCGC | 3 cut(s) | 222, 1552, 1923 |
| GsaI | CCCAGC | 5 cut(s) | 593, 966, 2100, 2664, 3841 |
| GsuI | CTGGAG | 2 cut(s) | 2775, 4056 |
| HaeII | RGCGCY | 1 cut(s) | 1554 |
| HapII | CCGG | 8 cut(s) | 62, 164, 277, 304, 513, 669, 3710, 4384 |
| HgaI | GACGC | 3 cut(s) | 571, 889, 3573 |
| HhaI | GCGC | 3 cut(s) | 223, 1553, 1924 |
| Hin1I | GRCGYC | 1 cut(s) | 582 |
| Hin6I | GCGC | 3 cut(s) | 221, 1551, 1922 |
| HinP1I | GCGC | 3 cut(s) | 221, 1551, 1922 |
| HindIII | AAGCTT | 1 cut(s) | 2987 |
| HpaII | CCGG | 8 cut(s) | 62, 164, 277, 304, 513, 669, 3710, 4384 |
| HphI | GGTGA | 7 cut(s) | 899, 900, 1238, 2109, 2632, 3046, 3257 |
| Hpy166II | GTNNAC | 8 cut(s) | 475, 1177, 1376, 1390, 3219, 4015, 4122, 4330 |
| Hpy8I | GTNNAC | 8 cut(s) | 475, 1177, 1376, 1390, 3219, 4015, 4122, 4330 |
| Hpy99I | CGWCG | 4 cut(s) | 815, 883, 1092, 4236 |
| HpyCH4IV | ACGT | 8 cut(s) | 677, 726, 1366, 2176, 2334, 4110, 4170, 4350 |
| HpySE526I | ACGT | 8 cut(s) | 677, 726, 1366, 2176, 2334, 4110, 4170, 4350 |
| Hsp92I | GRCGYC | 1 cut(s) | 582 |
| HspAI | GCGC | 3 cut(s) | 221, 1551, 1922 |
| Kpn2I | TCCGGA | 1 cut(s) | 61 |
| Ksp22I | TGATCA | 1 cut(s) | 3457 |
| KspI | CCGCGG | 1 cut(s) | 2525 |
| LguI | GCTCTTC | 1 cut(s) | 389 |
| LmnI | GCTCC | 7 cut(s) | 13, 64, 181, 2321, 2475, 3821, 4075 |
| MaeI | CTAG | 8 cut(s) | 561, 1151, 2061, 2421, 2796, 2945, 3051, 3921 |
| MaeII | ACGT | 8 cut(s) | 677, 726, 1366, 2176, 2334, 4110, 4170, 4350 |
| MbiI | CCGCTC | 3 cut(s) | 176, 342, 2724 |
| MfeI | CAATTG | 2 cut(s) | 192, 1314 |
| MflI | RGATCY | 5 cut(s) | 94, 1753, 1870, 2290, 3855 |
| MlsI | TGGCCA | 1 cut(s) | 698 |
| MluNI | TGGCCA | 1 cut(s) | 698 |
| MlyI | GAGTC | 5 cut(s) | 1955, 2072, 3280, 3431, 3841 |
| MmeI | TCCRAC | 5 cut(s) | 220, 1111, 2135, 3224, 3424 |
| Mox20I | TGGCCA | 1 cut(s) | 698 |
| Mph1103I | ATGCAT | 4 cut(s) | 2329, 2430, 2776, 3584 |
| MroI | TCCGGA | 1 cut(s) | 61 |
| MroXI | GAANNNNTTC | 1 cut(s) | 4202 |
| MscI | TGGCCA | 1 cut(s) | 698 |
| MseI | TTAA | 6 cut(s) | 1020, 1245, 1382, 1502, 2909, 3735 |
| MslI | CAYNNNNRTG | 6 cut(s) | 902, 1182, 1474, 4245, 4294, 4335 |
| Msp20I | TGGCCA | 1 cut(s) | 698 |
| MspA1I | CMGCKG | 5 cut(s) | 532, 711, 2096, 2524, 3544 |
| MspCI | CTTAAG | 1 cut(s) | 3734 |
| MspI | CCGG | 8 cut(s) | 62, 164, 277, 304, 513, 669, 3710, 4384 |
| MunI | CAATTG | 2 cut(s) | 192, 1314 |
| Mva1269I | GAATGC | 4 cut(s) | 2430, 4048, 4072, 4426 |
| MvnI | CGCG | 5 cut(s) | 223, 815, 2524, 3928, 4456 |
| NciI | CCSGG | 5 cut(s) | 277, 304, 513, 669, 670 |
| NheI | GCTAGC | 1 cut(s) | 2795 |
| NmeAIII | GCCGAG | 2 cut(s) | 109, 497 |
| NmuCI | GTSAC | 9 cut(s) | 583, 906, 976, 1010, 2003, 2405, 3034, 3555, 4106 |
| NruI | TCGCGA | 1 cut(s) | 4456 |
| NsiI | ATGCAT | 4 cut(s) | 2329, 2430, 2776, 3584 |
| NspI | RCATGY | 4 cut(s) | 511, 1620, 2432, 2450 |
| NspV | TTCGAA | 1 cut(s) | 3292 |
| OliI | CACNNNNGTG | 2 cut(s) | 1182, 4335 |
| PaeI | GCATGC | 1 cut(s) | 2450 |
| PagI | TCATGA | 4 cut(s) | 736, 1404, 2923, 4240 |
| PasI | CCCWGGG | 1 cut(s) | 798 |
| PceI | AGGCCT | 1 cut(s) | 2833 |
| PciI | ACATGT | 1 cut(s) | 1616 |
| PciSI | GCTCTTC | 1 cut(s) | 389 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1201 |
| PctI | GAATGC | 4 cut(s) | 2430, 4048, 4072, 4426 |
| PdmI | GAANNNNTTC | 1 cut(s) | 4202 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 3914, 4370 |
| PfoI | TCCNGGA | 1 cut(s) | 2398 |
| Ple19I | CGATCG | 1 cut(s) | 4454 |
| PleI | GAGTC | 5 cut(s) | 1955, 2072, 3280, 3431, 3841 |
| PmaCI | CACGTG | 1 cut(s) | 727 |
| PmlI | CACGTG | 1 cut(s) | 727 |
| PpsI | GAGTC | 5 cut(s) | 1955, 2072, 3280, 3431, 3841 |
| Ppu21I | YACGTR | 3 cut(s) | 678, 727, 1367 |
| PpuMI | RGGWCCY | 2 cut(s) | 1775, 2810 |
| PscI | ACATGT | 1 cut(s) | 1616 |
| Psp5II | RGGWCCY | 2 cut(s) | 1775, 2810 |
| PspCI | CACGTG | 1 cut(s) | 727 |
| PspFI | CCCAGC | 5 cut(s) | 589, 962, 2096, 2660, 3837 |
| PspPI | GGNCC | 8 cut(s) | 81, 230, 248, 310, 1775, 2810, 3197, 3917 |
| PspPPI | RGGWCCY | 2 cut(s) | 1775, 2810 |
| PstI | CTGCAG | 3 cut(s) | 947, 2809, 3732 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2813, 3116 |
| PsuI | RGATCY | 5 cut(s) | 94, 1753, 1870, 2290, 3855 |
| PvuI | CGATCG | 1 cut(s) | 4454 |
| PvuII | CAGCTG | 3 cut(s) | 711, 2096, 3544 |
| RgaI | GCGATCGC | 1 cut(s) | 4454 |
| RruI | TCGCGA | 1 cut(s) | 4456 |
| RseI | CAYNNNNRTG | 6 cut(s) | 902, 1182, 1474, 4245, 4294, 4335 |
| SacII | CCGCGG | 1 cut(s) | 2525 |
| SapI | GCTCTTC | 1 cut(s) | 389 |
| SaqAI | TTAA | 6 cut(s) | 1020, 1245, 1382, 1502, 2909, 3735 |
| Sau96I | GGNCC | 8 cut(s) | 81, 230, 248, 310, 1775, 2810, 3197, 3917 |
| SbfI | CCTGCAGG | 1 cut(s) | 2809 |
| ScaI | AGTACT | 1 cut(s) | 1525 |
| SchI | GAGTC | 5 cut(s) | 1955, 2072, 3280, 3431, 3841 |
| SdaI | CCTGCAGG | 1 cut(s) | 2809 |
| SfaAI | GCGATCGC | 1 cut(s) | 4454 |
| SfcI | CTRYAG | 7 cut(s) | 943, 2286, 2451, 2704, 2805, 3069, 3728 |
| Sfr303I | CCGCGG | 1 cut(s) | 2525 |
| SfuI | TTCGAA | 1 cut(s) | 3292 |
| SgfI | GCGATCGC | 1 cut(s) | 4454 |
| SgrAI | CRCCGGYG | 1 cut(s) | 163 |
| SgrBI | CCGCGG | 1 cut(s) | 2525 |
| SinI | GGWCC | 3 cut(s) | 1775, 2810, 3197 |
| SmaI | CCCGGG | 1 cut(s) | 670 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 902, 1182, 1474, 4245, 4294, 4335 |
| SmlI | CTYRAG | 4 cut(s) | 2441, 3164, 3524, 3734 |
| SmoI | CTYRAG | 4 cut(s) | 2441, 3164, 3524, 3734 |
| SphI | GCATGC | 1 cut(s) | 2450 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 2809 |
| SseBI | AGGCCT | 1 cut(s) | 2833 |
| SspMI | CTAG | 8 cut(s) | 561, 1151, 2061, 2421, 2796, 2945, 3051, 3921 |
| StuI | AGGCCT | 1 cut(s) | 2833 |
| StyI | CCWWGG | 2 cut(s) | 375, 4268 |
| TaiI | ACGT | 8 cut(s) | 680, 729, 1369, 2179, 2337, 4113, 4173, 4353 |
| TatI | WGTACW | 4 cut(s) | 1318, 1523, 1781, 2378 |
| TauI | GCSGC | 6 cut(s) | 163, 172, 345, 532, 1491, 2724 |
| Tru1I | TTAA | 6 cut(s) | 1020, 1245, 1382, 1502, 2909, 3735 |
| Tru9I | TTAA | 6 cut(s) | 1020, 1245, 1382, 1502, 2909, 3735 |
| TscAI | CASTG | 6 cut(s) | 475, 1006, 1458, 2713, 4024, 4083 |
| TseFI | GTSAC | 9 cut(s) | 583, 906, 976, 1010, 2003, 2405, 3034, 3555, 4106 |
| Tsp45I | GTSAC | 9 cut(s) | 583, 906, 976, 1010, 2003, 2405, 3034, 3555, 4106 |
| TspGWI | ACGGA | 7 cut(s) | 156, 478, 1029, 2383, 2462, 3242, 3257 |
| TspMI | CCCGGG | 1 cut(s) | 668 |
| TspRI | CASTG | 6 cut(s) | 475, 1006, 1458, 2713, 4024, 4083 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 3914, 4370 |
| Vha464I | CTTAAG | 1 cut(s) | 3734 |
| VneI | GTGCAC | 2 cut(s) | 1175, 4120 |
| VpaK11BI | GGWCC | 3 cut(s) | 1775, 2810, 3197 |
| XapI | RAATTY | 5 cut(s) | 968, 1623, 3451, 3595, 4199 |
| XbaI | TCTAGA | 1 cut(s) | 2420 |
| XceI | RCATGY | 4 cut(s) | 511, 1620, 2432, 2450 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1745 |
| XmaI | CCCGGG | 1 cut(s) | 668 |
| XmnI | GAANNNNTTC | 1 cut(s) | 4202 |
| XspI | CTAG | 8 cut(s) | 561, 1151, 2061, 2421, 2796, 2945, 3051, 3921 |
| ZrmI | AGTACT | 1 cut(s) | 1525 |
| Zsp2I | ATGCAT | 4 cut(s) | 2329, 2430, 2776, 3584 |