Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002661.1

Orthogroup ID

OG0011462

Physical Location & Seq

Genomic Coordinates Reverse (-)

80790 .. 87654

Gene Structure 6865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002661.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4482 bp

atggcagcttcggagcagccccaggaagttctgtcatggctcagagccctgcccgtagctccggagtaccaccctacttgggccgagttccaagatccgattgcctacattttcaagatcgagaaggaggcttccaagtatggaatctgcaaaatcgtgccgccggtgccgccggcgccgaagaaaacagcaattgctaatctcaacaagtctctggtggcgcgcggtgggccttcggttggaaaaggccccaaggccctgcccacattcactacccggcagcagcagatcgggttctgcccccggaaggcccgccccgtgcagagacccgtctggcagagcggcgagcactacacattcaaccaattcgaggccaaagccaagagctttgagaagagctacttgaagaagcggaggaagaagggaggcctgaaccctctggatgtcgagaccctttactggagagccactgtggacaagcccttctccgtcgagtacgccaatgacatgcccggctcggctttcgtgccgctcagcagcaagaagagtggcgccagcactagcagggaggcaggggacggcgtcacgctgggagagacggcctggaatatgaggggggtttccaggtccagagggtctctgctgaggtttatgaaggaggagattcccggggttacgtgtccaatggtctatgtcgccatgatgttcagctggtttgcttggcacgtcgaggatcatgacttgcatagcttgaattacctgcatttgggagccggcaagacttggtatggcgtccccagggaggctgccgtggccttcgaggaggtcgtcagagttcagggttatggaggagagatcaatcctcttgttacatttgctacgcttggtgagaagaccaccgtgatgtcacctgaagtctttattagttcagggattccatgctgcaggttagtgcaaaatgctggggaatttgttgtcacttttccaagagcctatcacactggattcagtcacggatttaattgtggggaggcagccaacattgcaactcctgagtggttgagggttgccaatgatgcggctgtccgacgagcttcaatcaattatcctcctatggtgtctcattttcagttactttatgatcttgctctagcattatgttcaagaacgcctgtgcgcaatagtgctgaacctcgaagttctcgactaaaagataagaaaaagggtgaaggagaaacagtagttaaaggtttatttgtgaagaatgtcattcagaacaatgagctgcttcatgttcttggaaaagggtcgtcaattgtacttctaccacagagttcttcggacatttctgtttgttcaaaattacgtgttggttcacagttaagagtaaaccctgatgatctcatgatagacgggaagcagggaatcaagcaggtaaaagggttgtattcagtgaaaggaaaacttgcatctttatgtgaaagtagccagcatccctcattaaatgcaaatggcaatgcaagtactccttctaagatgctgaacatgagcgctaaaagagaaagtaatgttgaaggcgaagggttgtcagatcagagactattttcttgtgttacatgtggaattttgagcttttcatgtgttgctataattcaaccaagagaagcagcagccagatatctcatgtcagcagattgtagttttttcaacgattgggctgttgattgtgagcctatccaggttgcaaatggagatccaaatagttcaaagaagggtccctgtacagaaacaggattgatgcaaaagagtacccatgatggtttatacgatgtgcccgttcagtctgctgattatcgaaatcagatcacagatccaatcaatgaagttgattcaaatactgaaatgcagagagatactaatgcacttgggctattagctttgacctatggagattcatctgactcggaggaagatcaggctgaaccagatgctcctgtttgtggtgacgaaacaaacttgtcagactgttctttggaaggtagatatgagtataaaagtgctagtcctcctttgagagactcttatggaggtacagccggggttcgcagtccaacttcaccacgatttgattgtggtaatgaactcccgactgttgacagcaatgtggaaaatagacgtgaagcaactaatttcaaggataatggtcatcaatatattgactattctgttgatcttgacactttgacaaagacaaatggtttggggggtacatctatagatccagtaaaggtttcatattctggctccccagatgcgttagacattcaaccaacacgatttggtcaggccactttacagaaagagagtacaggcacatcattttttccaggatgtgaccaggattcttctagaatgcatgtgttctgccttgagcatgctgtagaggttgagcagcagctccgttcatttggaggtgcccatattttactcctttgtcatccagactatccgcggatagtggatgaagcaaaagaaatagcagaagaactgggagtaaattatccctggaatgatatggtattcagggatgccaccagggaggatgaggagaggattcagtcagctctggatagtgaggaagccattgctgggaatggagactgggctgtaaagatggggatcaatctcttctacagtgccagtcttagccgctctcatctttatagtaagcagatgccatacaattctgttatatacaatgcatttggtcgtagttctccagctagctcgcctgcaggacctgaggtctgtgggaggaggcctgccaaacagaaaaagatagtggtagggaaatggtgcggtaaagtttggatgtcaaatcaagttcatcccttcttaataaaaagggatcatgaagagaaaaaagtagagctagaacagaggaggttccatgattcagaaatgccagatgagaagcttgatggaaaatcagaaagcacacgcaaaactgagaaaactatggtgactaaacagtattctaggaagaggaaaatgactgtagagggtgggacaaccaagaaagcaaaatgtcctgatgcagtttctgctcattcagtagatgataactcccatcagcagcagaagaggtttctcaagaacaagcaagccaaatatatagagagtggtccaaccaagaaagcaaagtttactgagacggaagatgcagtgtcaggtgattcaatggaagatgatttccgtcagcaaaataggaggactcttcgaagcgagcaagccaagtatattgagggagatgatgatgtttcagatgattcaatgggagttgattctcaccagcagcagaggcggattgctaaaagtaagcaagcgaagtatattgccagagatttctctatgttgtcagatgattcagttggagttaattctgatcatcagcagaggcgggttgctgaaagtaatgccagggagttctctgcggtttcagatgattctcttgaggataatatccatcagctgcataggaggtcacttagacgcaacaaaggtaaatgcattgggagaggaaatttgacttcacaaaatcttcacggggtcagttctcctcagcaacaaaggaggacttctaaaagcaagcaggccaaaactgtggagagagaagatgcagctctggatgacacaccggacgataatgctgcactgcggcttaagagtttccgaggcaggcaaataaaaccagagaccgttcagcaaaagaaacaggaaactcctcgccgtgtgaagcaaggctcccgccgtcttcaagaaacccagcaaaagactcccaggatccaaaatattcaatctgaacaaaacactgttgatgtaaatgctgaggaaccagaaggtgggcctagcacgcgacttagaaaaagacctccaaaagagcagccagaaaccggtaggaaaaaggcaaaagagcagccagaaactggaaggaaaaaggcaagagagcagcaacaaactggtaggataaaggtaaacactgctttaggtgtgaagacaaagaatgcttcagctcggaagggaaagaatgcttcagcagtgagggaagaggaagcagaattcttgtgtgacgttgaggggtgcaccatgagttttggcacgaaacaagagctaaatctccacaagaaaaacgtgtgtccggtcaaggggtgtggaaagaaattcttctcgcacaagtatctggtgcaacatcgtcgagttcatgaggatgaccgcccccttcggtgcccttggaagggatgcaagatgacattcaagtgggcatgggctcggactgagcacattagggtacacacaggtgcccgtccgtacgtctgtgcagagccagggtgtgggcagaccttccggtttgtgtcagatttcagccgtcataagcggaagactgggcattcagtaaagaaaggtaaggggcgatcgcgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008214 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009791 GO:0009826 GO:0009892 GO:0009987 GO:0010033 GO:0010228 GO:0010605 GO:0010639 GO:0014070 GO:0016043 GO:0016049 GO:0016569 GO:0016570 GO:0016577 GO:0019222 GO:0019538 GO:0022414 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032989 GO:0033043 GO:0033044 GO:0033169 GO:0033993 GO:0035065 GO:0035067 GO:0036211 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051276 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0099402 GO:1901564 GO:1901700 GO:1901983 GO:1901984 GO:1902275 GO:1905268 GO:2000756 GO:2000757 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JmjC JmjN zf-C2H2

Protein Analysis

1493

Amino Acids

166.5

Weight (kDa)

9.05

Isoelectric Point (pI)

50.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48430 AT3G48430
fragaria_vesca	FvH4_5g07090 FvH4_5g07090 FvH4_5g07090
malus_domestica	MD06G1159300.v1.1 MD14G1165600.v1.1
prunus_persica	Prupe.5G159200_v2.0.a1
pyrus_communis	pycom06g14210 pycom14g13810
rosa_chinensis	RchiOBHm_Chr7g0191461
rosa_laevigata	RLG00000004448
rosa_multiflora	Rmu_sc0002661.1_g000009
rosa_roxburghii	Rroxscaffold_157G00438400 Rroxscaffold_3G00263790
rosa_rugosa	Rorug06G0510400
rosa_samantha	Rh7AG118500 Rh7BG120500 Rh7CG123300 Rh7DG121400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1178
Acc36I	ACCTGC	3 cut(s)	768, 936, 1423
AccB1I	GGYRCC	6 cut(s)	166, 175, 551, 2474, 4284, 4358
AccB7I	CCANNNNNTGG	3 cut(s)	3902, 3986, 4391
AccBSI	CCGCTC	3 cut(s)	342, 532, 2712
AccII	CGCG	5 cut(s)	223, 225, 2512, 3916, 4477
AccIII	TCCGGA	1 cut(s)	61
AclWI	GGATC	9 cut(s)	89, 741, 1748, 1865, 2273, 2687, 2916, 3838, 3851
AcsI	RAATTY	5 cut(s)	968, 1623, 3583, 4118, 4220
AcuI	CTGAAG	3 cut(s)	933, 4053, 4077
AcyI	GRCGYC	4 cut(s)	176, 552, 582, 792
AfeI	AGCGCT	1 cut(s)	1552
AflII	CTTAAG	1 cut(s)	3722
AflIII	ACRYGT	4 cut(s)	677, 1366, 1616, 4191
AgeI	ACCGGT	1 cut(s)	3953
AhdI	GACNNNNNGTC	1 cut(s)	2804
AjiI	CACGTC	2 cut(s)	727, 2177
AleI	CACNNNNGTG	1 cut(s)	4356
Alw21I	GWGCWC	3 cut(s)	351, 4145, 4341
Alw44I	GTGCAC	1 cut(s)	4141
AlwI	GGATC	9 cut(s)	89, 741, 1748, 1865, 2273, 2687, 2916, 3838, 3851
AlwNI	CAGNNNCTG	3 cut(s)	2801, 3104, 3986
Ama87I	CYCGRG	1 cut(s)	668
Aor13HI	TCCGGA	1 cut(s)	61
Aor51HI	AGCGCT	1 cut(s)	1552
ApaLI	GTGCAC	1 cut(s)	4141
ApoI	RAATTY	5 cut(s)	968, 1623, 3583, 4118, 4220
ArsI	GACNNNNNNTTYG	2 cut(s)	2242, 2274
AsiGI	ACCGGT	1 cut(s)	3953
AsiSI	GCGATCGC	1 cut(s)	4475
Asp700I	GAANNNNTTC	1 cut(s)	4223
AspLEI	GCGC	6 cut(s)	178, 223, 225, 554, 1179, 1553
AsuC2I	CCSGG	6 cut(s)	277, 304, 513, 669, 670, 2098
AsuHPI	GGTGA	8 cut(s)	899, 900, 1238, 2015, 2109, 3034, 3245, 3341
AsuII	TTCGAA	1 cut(s)	3280
AsuNHI	GCTAGC	1 cut(s)	2783
AvaI	CYCGRG	1 cut(s)	668
AvaII	GGWCC	4 cut(s)	627, 1775, 2798, 3185
AxyI	CCTNAGG	1 cut(s)	2802
BaeGI	GKGCMC	5 cut(s)	1836, 2479, 4145, 4289, 4363
BamHI	GGATCC	1 cut(s)	3843
BanI	GGYRCC	6 cut(s)	166, 175, 551, 2474, 4284, 4358
BanII	GRGCYC	2 cut(s)	49, 4330
BbsI	GAAGAC	4 cut(s)	899, 3806, 4061, 4445
Bbv12I	GWGCWC	3 cut(s)	351, 4145, 4341
BbvCI	CCTCAGC	3 cut(s)	644, 3621, 3888
BccI	CCATC	5 cut(s)	1811, 2668, 2975, 3138, 3534
BceAI	ACGGC	6 cut(s)	595, 615, 794, 3774, 3795, 4410
BcgI	CGANNNNNNTGC	4 cut(s)	3692, 3726, 4235, 4269
BclI	TGATCA	1 cut(s)	3445
BcnI	CCSGG	6 cut(s)	277, 304, 513, 669, 670, 2098
BfaI	CTAG	8 cut(s)	561, 1151, 2061, 2409, 2784, 2933, 3039, 3909
BfmI	CTRYAG	6 cut(s)	943, 2274, 2439, 2692, 2793, 3057
BfoI	RGCGCY	3 cut(s)	179, 555, 1554
BfrI	CTTAAG	1 cut(s)	3722
BfuAI	ACCTGC	3 cut(s)	768, 936, 1423
BlpI	GCTNAGC	1 cut(s)	533
BmcAI	AGTACT	1 cut(s)	1525
Bme18I	GGWCC	4 cut(s)	627, 1775, 2798, 3185
BmeRI	GACNNNNNGTC	1 cut(s)	2804
BmeT110I	CYCGRG	1 cut(s)	668
BmgBI	CACGTC	2 cut(s)	727, 2177
BmrI	ACTGGG	3 cut(s)	2558, 2671, 4452
BmtI	GCTAGC	1 cut(s)	2787
BmuI	ACTGGG	3 cut(s)	2558, 2671, 4452
BpiI	GAAGAC	4 cut(s)	899, 3806, 4061, 4445
BpmI	CTGGAG	2 cut(s)	481, 2763
Bpu10I	CCTNAGC	3 cut(s)	644, 3621, 3888
Bpu1102I	GCTNAGC	1 cut(s)	533
Bpu14I	TTCGAA	1 cut(s)	3280
BpuEI	CTTGAG	3 cut(s)	2450, 3137, 3533
BpuMI	CCSGG	6 cut(s)	277, 304, 513, 669, 670, 2098
BsaAI	YACGTR	2 cut(s)	678, 1367
BsaBI	GATNNNNATC	1 cut(s)	2678
BsaHI	GRCGYC	4 cut(s)	176, 552, 582, 792
BsaI	GGTCTC	4 cut(s)	319, 443, 642, 3749
BsaWI	WCCGGW	5 cut(s)	61, 3697, 3953, 4198, 4404
BsaXI	ACNNNNNCTCC	2 cut(s)	1224, 1254
Bse118I	RCCGGY	4 cut(s)	163, 172, 773, 3953
Bse1I	ACTGG	9 cut(s)	464, 1006, 2282, 2553, 2666, 2700, 3991, 4024, 4447
Bse21I	CCTNAGG	1 cut(s)	2802
Bse3DI	GCAATG	4 cut(s)	1041, 1522, 2167, 2643
Bse8I	GATNNNNATC	1 cut(s)	2678
BseAI	TCCGGA	1 cut(s)	61
BseJI	GATNNNNATC	1 cut(s)	2678
BseMI	GCAATG	4 cut(s)	1041, 1522, 2167, 2643
BseNI	ACTGG	9 cut(s)	464, 1006, 2282, 2553, 2666, 2700, 3991, 4024, 4447
BsePI	GCGCGC	1 cut(s)	221
BseRI	GAGGAG	8 cut(s)	674, 836, 864, 2621, 2830, 2956, 3609, 3774
BseSI	GKGCMC	5 cut(s)	1836, 2479, 4145, 4289, 4363
BseYI	CCCAGC	4 cut(s)	589, 962, 2648, 3825
BsgI	GTGCAG	3 cut(s)	341, 3696, 4398
Bsh1236I	CGCG	5 cut(s)	223, 225, 2512, 3916, 4477
Bsh1285I	CGRYCG	1 cut(s)	4475
BshNI	GGYRCC	6 cut(s)	166, 175, 551, 2474, 4284, 4358
BshTI	ACCGGT	1 cut(s)	3953
BsiEI	CGRYCG	1 cut(s)	4475
BsiHKAI	GWGCWC	3 cut(s)	351, 4145, 4341
BsiHKCI	CYCGRG	1 cut(s)	668
BsiWI	CGTACG	1 cut(s)	4368
BslFI	GGGAC	4 cut(s)	590, 779, 1761, 3082
BsmBI	CGTCTC	2 cut(s)	590, 3206
BsmFI	GGGAC	4 cut(s)	590, 779, 1761, 3082
BsmI	GAATGC	4 cut(s)	2418, 4069, 4093, 4447
Bso31I	GGTCTC	4 cut(s)	319, 443, 642, 3749
BsoBI	CYCGRG	1 cut(s)	668
Bsp119I	TTCGAA	1 cut(s)	3280
Bsp1286I	GDGCHC	9 cut(s)	49, 351, 1836, 2479, 4145, 4289, 4330, 4341, 4363
Bsp13I	TCCGGA	1 cut(s)	61
Bsp1407I	TGTACA	1 cut(s)	1781
Bsp1720I	GCTNAGC	1 cut(s)	533
Bsp68I	TCGCGA	1 cut(s)	4477
BspEI	TCCGGA	1 cut(s)	61
BspFNI	CGCG	5 cut(s)	223, 225, 2512, 3916, 4477
BspHI	TCATGA	4 cut(s)	736, 1404, 2911, 4261
BspMAI	CTGCAG	2 cut(s)	947, 2797
BspMI	ACCTGC	3 cut(s)	768, 936, 1423
BspOI	GCTAGC	1 cut(s)	2787
BspPI	GGATC	9 cut(s)	89, 741, 1748, 1865, 2273, 2687, 2916, 3838, 3851
BspQI	GCTCTTC	1 cut(s)	389
BspT104I	TTCGAA	1 cut(s)	3280
BspT107I	GGYRCC	6 cut(s)	166, 175, 551, 2474, 4284, 4358
BspTI	CTTAAG	1 cut(s)	3722
BspTNI	GGTCTC	4 cut(s)	319, 443, 642, 3749
BsrBI	CCGCTC	3 cut(s)	342, 532, 2712
BsrDI	GCAATG	4 cut(s)	1041, 1522, 2167, 2643
BsrFI	RCCGGY	4 cut(s)	163, 172, 773, 3953
BsrGI	TGTACA	1 cut(s)	1781
BsrI	ACTGG	9 cut(s)	464, 1006, 2282, 2553, 2666, 2700, 3991, 4024, 4447
BssAI	RCCGGY	4 cut(s)	163, 172, 773, 3953
BssHII	GCGCGC	1 cut(s)	221
BssNI	GRCGYC	4 cut(s)	176, 552, 582, 792
BssT1I	CCWWGG	2 cut(s)	252, 4289
Bst6I	CTCTTC	8 cut(s)	389, 539, 2693, 2910, 3038, 3137, 3282, 4101
BstACI	GRCGYC	4 cut(s)	176, 552, 582, 792
BstAFI	CTTAAG	1 cut(s)	3722
BstAPI	GCANNNNNTGC	1 cut(s)	3104
BstAUI	TGTACA	1 cut(s)	1781
BstBAI	YACGTR	2 cut(s)	678, 1367
BstBI	TTCGAA	1 cut(s)	3280
BstDSI	CCRYGG	2 cut(s)	810, 2510
BstFNI	CGCG	5 cut(s)	223, 225, 2512, 3916, 4477
BstH2I	RGCGCY	3 cut(s)	179, 555, 1554
BstHHI	GCGC	6 cut(s)	178, 223, 225, 554, 1179, 1553
BstMCI	CGRYCG	1 cut(s)	4475
BstNSI	RCATGY	4 cut(s)	511, 1620, 2420, 2438
BstSFI	CTRYAG	6 cut(s)	943, 2274, 2439, 2692, 2793, 3057
BstSLI	GKGCMC	5 cut(s)	1836, 2479, 4145, 4289, 4363
BstUI	CGCG	5 cut(s)	223, 225, 2512, 3916, 4477
BstV2I	GAAGAC	4 cut(s)	899, 3806, 4061, 4445
BstX2I	RGATCY	5 cut(s)	94, 1753, 1870, 2278, 3843
BstXI	CCANNNNNNTGG	1 cut(s)	3664
BstYI	RGATCY	5 cut(s)	94, 1753, 1870, 2278, 3843
Bsu36I	CCTNAGG	1 cut(s)	2802
BtgI	CCRYGG	2 cut(s)	810, 2510
BtrI	CACGTC	2 cut(s)	727, 2177
BtsI	GCAGTG	4 cut(s)	3231, 3713, 4038, 4104
BtsIMutI	CAGTG	9 cut(s)	468, 999, 1458, 2701, 3231, 3713, 3870, 4038, 4104
BtuMI	TCGCGA	1 cut(s)	4477
BveI	ACCTGC	3 cut(s)	768, 936, 1423
CaiI	CAGNNNCTG	3 cut(s)	2801, 3104, 3986
CciI	TCATGA	4 cut(s)	736, 1404, 2911, 4261
CfoI	GCGC	6 cut(s)	178, 223, 225, 554, 1179, 1553
Cfr10I	RCCGGY	4 cut(s)	163, 172, 773, 3953
Cfr42I	CCGCGG	1 cut(s)	2513
Cfr9I	CCCGGG	1 cut(s)	668
CseI	GACGC	3 cut(s)	571, 781, 3561
CspAI	ACCGGT	1 cut(s)	3953
CspCI	CAANNNNNGTGG	6 cut(s)	59, 94, 529, 564, 4192, 4227
DinI	GGCGCC	2 cut(s)	177, 553
DriI	GACNNNNNGTC	1 cut(s)	2804
Eam1104I	CTCTTC	8 cut(s)	389, 539, 2693, 2910, 3038, 3137, 3282, 4101
Eam1105I	GACNNNNNGTC	1 cut(s)	2804
EarI	CTCTTC	8 cut(s)	389, 539, 2693, 2910, 3038, 3137, 3282, 4101
EciI	GGCGGA	1 cut(s)	3379
Eco130I	CCWWGG	2 cut(s)	252, 4289
Eco147I	AGGCCT	2 cut(s)	429, 2821
Eco24I	GRGCYC	2 cut(s)	49, 4330
Eco31I	GGTCTC	4 cut(s)	319, 443, 642, 3749
Eco32I	GATATC	1 cut(s)	1679
Eco47I	GGWCC	4 cut(s)	627, 1775, 2798, 3185
Eco47III	AGCGCT	1 cut(s)	1552
Eco57I	CTGAAG	3 cut(s)	933, 4053, 4077
Eco81I	CCTNAGG	1 cut(s)	2802
Eco88I	CYCGRG	1 cut(s)	668
EcoO109I	RGGNCCY	4 cut(s)	248, 256, 1775, 2798
EcoRI	GAATTC	1 cut(s)	4118
EcoRV	GATATC	1 cut(s)	1679
EcoT14I	CCWWGG	2 cut(s)	252, 4289
EcoT22I	ATGCAT	3 cut(s)	2418, 2764, 3572
EcoT38I	GRGCYC	2 cut(s)	49, 4330
EgeI	GGCGCC	2 cut(s)	177, 553
EheI	GGCGCC	2 cut(s)	177, 553
ErhI	CCWWGG	2 cut(s)	252, 4289
Esp3I	CGTCTC	2 cut(s)	590, 3206
FaqI	GGGAC	4 cut(s)	590, 779, 1761, 3082
FauI	CCCGC	3 cut(s)	320, 3453, 3815
FbaI	TGATCA	1 cut(s)	3445
FriOI	GRGCYC	2 cut(s)	49, 4330
FspBI	CTAG	8 cut(s)	561, 1151, 2061, 2409, 2784, 2933, 3039, 3909
FspI	TGCGCA	1 cut(s)	1178
GlaI	GCGC	6 cut(s)	177, 222, 224, 553, 1178, 1552
GsaI	CCCAGC	4 cut(s)	593, 966, 2652, 3829
GsuI	CTGGAG	2 cut(s)	481, 2763
HaeII	RGCGCY	3 cut(s)	179, 555, 1554
HgaI	GACGC	3 cut(s)	571, 781, 3561
HhaI	GCGC	6 cut(s)	178, 223, 225, 554, 1179, 1553
Hin1I	GRCGYC	4 cut(s)	176, 552, 582, 792
Hin6I	GCGC	6 cut(s)	176, 221, 223, 552, 1177, 1551
HinP1I	GCGC	6 cut(s)	176, 221, 223, 552, 1177, 1551
HincII	GTYRAC	1 cut(s)	2155
HindII	GTYRAC	1 cut(s)	2155
HindIII	AAGCTT	1 cut(s)	2975
HphI	GGTGA	8 cut(s)	899, 900, 1238, 2015, 2109, 3034, 3245, 3341
Hpy166II	GTNNAC	8 cut(s)	475, 1376, 1390, 2155, 3207, 4036, 4143, 4351
Hpy8I	GTNNAC	8 cut(s)	475, 1376, 1390, 2155, 3207, 4036, 4143, 4351
Hpy99I	CGWCG	4 cut(s)	494, 731, 1092, 4257
HpyCH4IV	ACGT	7 cut(s)	677, 726, 1366, 2176, 4131, 4191, 4371
HpySE526I	ACGT	7 cut(s)	677, 726, 1366, 2176, 4131, 4191, 4371
Hsp92I	GRCGYC	4 cut(s)	176, 552, 582, 792
HspAI	GCGC	6 cut(s)	176, 221, 223, 552, 1177, 1551
KasI	GGCGCC	2 cut(s)	175, 551
KflI	GGGWCCC	1 cut(s)	1775
Kpn2I	TCCGGA	1 cut(s)	61
KroI	GCCGGC	2 cut(s)	172, 773
KroNI	GCCGGC	2 cut(s)	174, 775
Ksp22I	TGATCA	1 cut(s)	3445
KspI	CCGCGG	1 cut(s)	2513
LguI	GCTCTTC	1 cut(s)	389
LmnI	GCTCC	7 cut(s)	13, 64, 770, 1996, 2309, 2463, 3809
MaeI	CTAG	8 cut(s)	561, 1151, 2061, 2409, 2784, 2933, 3039, 3909
MaeII	ACGT	7 cut(s)	677, 726, 1366, 2176, 4131, 4191, 4371
MbiI	CCGCTC	3 cut(s)	342, 532, 2712
MfeI	CAATTG	2 cut(s)	192, 1314
MflI	RGATCY	5 cut(s)	94, 1753, 1870, 2278, 3843
MhlI	GDGCHC	9 cut(s)	49, 351, 1836, 2479, 4145, 4289, 4330, 4341, 4363
Mly113I	GGCGCC	2 cut(s)	176, 552
MlyI	GAGTC	4 cut(s)	1955, 2072, 3268, 3829
MmeI	TCCRAC	5 cut(s)	220, 1111, 2135, 3212, 3412
Mph1103I	ATGCAT	3 cut(s)	2418, 2764, 3572
MreI	CGCCGGCG	1 cut(s)	172
MroI	TCCGGA	1 cut(s)	61
MroNI	GCCGGC	2 cut(s)	172, 773
MroXI	GAANNNNTTC	1 cut(s)	4223
MseI	TTAA	7 cut(s)	1020, 1245, 1382, 1502, 2897, 3438, 3723
MslI	CAYNNNNRTG	5 cut(s)	902, 1474, 4266, 4315, 4356
MspA1I	CMGCKG	3 cut(s)	711, 2512, 3532
MspCI	CTTAAG	1 cut(s)	3722
MunI	CAATTG	2 cut(s)	192, 1314
Mva1269I	GAATGC	4 cut(s)	2418, 4069, 4093, 4447
MvnI	CGCG	5 cut(s)	223, 225, 2512, 3916, 4477
NaeI	GCCGGC	2 cut(s)	174, 775
NarI	GGCGCC	2 cut(s)	176, 552
NciI	CCSGG	6 cut(s)	277, 304, 513, 669, 670, 2098
NgoMIV	GCCGGC	2 cut(s)	172, 773
NheI	GCTAGC	1 cut(s)	2783
NmeAIII	GCCGAG	2 cut(s)	109, 497
NmuCI	GTSAC	9 cut(s)	583, 906, 976, 1010, 2003, 2393, 3022, 3543, 4127
NruI	TCGCGA	1 cut(s)	4477
NsbI	TGCGCA	1 cut(s)	1178
NsiI	ATGCAT	3 cut(s)	2418, 2764, 3572
NspI	RCATGY	4 cut(s)	511, 1620, 2420, 2438
NspV	TTCGAA	1 cut(s)	3280
OliI	CACNNNNGTG	1 cut(s)	4356
PaeI	GCATGC	1 cut(s)	2438
PagI	TCATGA	4 cut(s)	736, 1404, 2911, 4261
PasI	CCCWGGG	1 cut(s)	798
PauI	GCGCGC	1 cut(s)	221
PceI	AGGCCT	2 cut(s)	429, 2821
PciI	ACATGT	1 cut(s)	1616
PciSI	GCTCTTC	1 cut(s)	389
PcsI	WCGNNNNNNNCGW	3 cut(s)	825, 1201, 1833
PctI	GAATGC	4 cut(s)	2418, 4069, 4093, 4447
PdiI	GCCGGC	2 cut(s)	174, 775
PdmI	GAANNNNTTC	1 cut(s)	4223
Pfl23II	CGTACG	1 cut(s)	4368
PflFI	GACNNNGTC	1 cut(s)	581
PflMI	CCANNNNNTGG	3 cut(s)	3902, 3986, 4391
PfoI	TCCNGGA	1 cut(s)	2386
PinAI	ACCGGT	1 cut(s)	3953
Ple19I	CGATCG	1 cut(s)	4475
PleI	GAGTC	4 cut(s)	1955, 2072, 3268, 3829
PluTI	GGCGCC	2 cut(s)	179, 555
PpsI	GAGTC	4 cut(s)	1955, 2072, 3268, 3829
Ppu21I	YACGTR	2 cut(s)	678, 1367
PpuMI	RGGWCCY	2 cut(s)	1775, 2798
PscI	ACATGT	1 cut(s)	1616
Psp5II	RGGWCCY	2 cut(s)	1775, 2798
PspFI	CCCAGC	4 cut(s)	589, 962, 2648, 3825
PspLI	CGTACG	1 cut(s)	4368
PspPPI	RGGWCCY	2 cut(s)	1775, 2798
PstI	CTGCAG	2 cut(s)	947, 2797
PstNI	CAGNNNCTG	3 cut(s)	2801, 3104, 3986
PsuI	RGATCY	5 cut(s)	94, 1753, 1870, 2278, 3843
PsyI	GACNNNGTC	1 cut(s)	581
PteI	GCGCGC	1 cut(s)	221
PvuI	CGATCG	1 cut(s)	4475
PvuII	CAGCTG	2 cut(s)	711, 3532
RgaI	GCGATCGC	1 cut(s)	4475
RruI	TCGCGA	1 cut(s)	4477
RseI	CAYNNNNRTG	5 cut(s)	902, 1474, 4266, 4315, 4356
SacII	CCGCGG	1 cut(s)	2513
SapI	GCTCTTC	1 cut(s)	389
SaqAI	TTAA	7 cut(s)	1020, 1245, 1382, 1502, 2897, 3438, 3723
SbfI	CCTGCAGG	1 cut(s)	2797
ScaI	AGTACT	1 cut(s)	1525
SchI	GAGTC	4 cut(s)	1955, 2072, 3268, 3829
SdaI	CCTGCAGG	1 cut(s)	2797
SduI	GDGCHC	9 cut(s)	49, 351, 1836, 2479, 4145, 4289, 4330, 4341, 4363
SfaAI	GCGATCGC	1 cut(s)	4475
SfcI	CTRYAG	6 cut(s)	943, 2274, 2439, 2692, 2793, 3057
SfoI	GGCGCC	2 cut(s)	177, 553
Sfr303I	CCGCGG	1 cut(s)	2513
SfuI	TTCGAA	1 cut(s)	3280
SgfI	GCGATCGC	1 cut(s)	4475
SgrAI	CRCCGGYG	2 cut(s)	163, 172
SgrBI	CCGCGG	1 cut(s)	2513
SinI	GGWCC	4 cut(s)	627, 1775, 2798, 3185
SmaI	CCCGGG	1 cut(s)	670
SmiMI	CAYNNNNRTG	5 cut(s)	902, 1474, 4266, 4315, 4356
SmlI	CTYRAG	4 cut(s)	2429, 3152, 3512, 3722
SmoI	CTYRAG	4 cut(s)	2429, 3152, 3512, 3722
SphI	GCATGC	1 cut(s)	2438
Sse8387I	CCTGCAGG	1 cut(s)	2797
SseBI	AGGCCT	2 cut(s)	429, 2821
SspDI	GGCGCC	2 cut(s)	175, 551
SspI	AATATT	1 cut(s)	3853
SspMI	CTAG	8 cut(s)	561, 1151, 2061, 2409, 2784, 2933, 3039, 3909
StuI	AGGCCT	2 cut(s)	429, 2821
StyI	CCWWGG	2 cut(s)	252, 4289
TaiI	ACGT	7 cut(s)	680, 729, 1369, 2179, 4134, 4194, 4374
TatI	WGTACW	4 cut(s)	1318, 1523, 1781, 2366
TauI	GCSGC	7 cut(s)	163, 172, 345, 532, 1082, 2712, 3721
Tru1I	TTAA	7 cut(s)	1020, 1245, 1382, 1502, 2897, 3438, 3723
Tru9I	TTAA	7 cut(s)	1020, 1245, 1382, 1502, 2897, 3438, 3723
TscAI	CASTG	9 cut(s)	475, 1006, 1458, 2701, 3231, 3720, 3877, 4045, 4104
TseFI	GTSAC	9 cut(s)	583, 906, 976, 1010, 2003, 2393, 3022, 3543, 4127
Tsp45I	GTSAC	9 cut(s)	583, 906, 976, 1010, 2003, 2393, 3022, 3543, 4127
TspGWI	ACGGA	6 cut(s)	478, 1029, 2450, 3230, 3245, 4356
TspMI	CCCGGG	1 cut(s)	668
TspRI	CASTG	9 cut(s)	475, 1006, 1458, 2701, 3231, 3720, 3877, 4045, 4104
Tth111I	GACNNNGTC	1 cut(s)	581
Van91I	CCANNNNNTGG	3 cut(s)	3902, 3986, 4391
Vha464I	CTTAAG	1 cut(s)	3722
VneI	GTGCAC	1 cut(s)	4141
VpaK11BI	GGWCC	4 cut(s)	627, 1775, 2798, 3185
XapI	RAATTY	5 cut(s)	968, 1623, 3583, 4118, 4220
XbaI	TCTAGA	1 cut(s)	2408
XceI	RCATGY	4 cut(s)	511, 1620, 2420, 2438
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1745
XmaI	CCCGGG	1 cut(s)	668
XmnI	GAANNNNTTC	1 cut(s)	4223
XspI	CTAG	8 cut(s)	561, 1151, 2061, 2409, 2784, 2933, 3039, 3909
ZrmI	AGTACT	1 cut(s)	1525
Zsp2I	ATGCAT	3 cut(s)	2418, 2764, 3572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.