Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0011462

Physical Location & Seq

Genomic Coordinates Reverse (-)

25922669 .. 25930130

Gene Structure 7462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1165600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4401 bp

ATGGCGGCTTCTTCTGGGTTGATAGCAGAGGCGAACCCGGAGGTGTTTCCATGGCTCAAAACCCTACCTGTAGCTCCGGAGTACCACCCCACTTGGGCTGAGTTCCAAGATCCGATTGCCTACATTTTCAAGATCGAGAAGGAGGCTTCCCAGTTCGGAATCTGCAAAATCGTGCCGCCGGTGCCGCCTTCCACGAAGAAGACCACAATTGGGAACTTCAACCGGTCTCTGGCTGCTCGGGCGGGGGTTTCGGGTTCTTCGTGCCCGAAATCTGAGCCCACATTCACTACCCGGCAGCAGCAGATCGGGTTCTGCCCTCGGAGGCCACGGCCTGTGCACCGACCCGTGTGGCAGAGCGGCGAGCAATACACTTTCCAGGAATTCGAAGTGAAAGCGAAGAGCTTTGAGAAGAGTTACTTGAGAAAATGTAGCAAGAAGGGAGGGCTTTCGCCGCTGGAAATTGAAACCCTTTACTGGAAGGCGACTGTGGATAAACCCTTTTCGGTGGAGTATGCCAACGACATGCCTGGTTCGGCTTTCATGCCAGTGAGTGCGAGAAAGAGTAGTAGTACTAGTAGAGATGCAGGGGACAATGTGACTCTTGGTGAGACTGCGTGGAATATGAGGGGGGTGTCGAGGTCAAAGGGGTCGTTGTTGAGGTTTATGAAGGAGGAGATTCCGGGGGTTACTTCGCCTATGGTGTATATTGCTATGTTGTTCAGCTGGTTTGCTTGGCATGTGGAGGACCATGACTTGCATAGCCTGAATTATCTGCATATGGGAGCAGGGAAGACGTGGTATGGCGTGCCAAAGGACGCTGCGGTTGCATTTGAGGAGGTCGTGAGGGTACAGGGCTATGCAGGAGAGATCAATCCTCTTGTTACCTTTTCAACCCTTGGCGAGAAGACTACTGTGATGTCTCCTGAAGTATTTGTCAGTTCAGGAATTCCATGCTGCAGGCTTGTGCAAAATGCCGGGGAGTTTGTTGTGACTTTCCCAAGAGCATATCACACTGGATTCAGTCATGGATTTAATTGTGCGGAGGCAGCTAATATTGCAACTCCTGAGTGGTTGAGGGTTGCAAAGGATGCTGCCATTCGACGAGCTTCAATCAATTATCCTCCGATGGTGTCTCATTTTCAATTACTTTATGATCTTGCTTTAGCATTGTGTTCAAGAATGCCTTCGCGCATTAGTTCTGAACCACGGAGTTCTCGACTGAAAGATAAGAGAAAGTGTGAAGGAGACATAGTAGTTAAAGAGCTATTTGTACAGGATGTCATTCAGAACAACGACCTGCTTCATGTTCTTGGAAAAGGGTCACCAATTATCCTTCTACCGCAAAGTTCTTCACACCTTTCTGTGTGTTCAAAATTACGTGTTGGTTCACAGTTAAGAGTAAACCCTGGATTTTCCCATGGTTCACACAGTCTGAAGGAAGAAATGAAATCCTCAGGCTCAGTTTCTGATGGTCTCATGAGAGACAGGCAGCAGGTTAAAGGTTTCTATTCAGTGAGAGGAAAACTTGCATCTCTAAGTGAAAGTAATACTCTTCCCTCTTTAAGTGGATCTAACAATGTACACGGCCTGAATTCGAAGAGGTCAAACTTGAACTGTGAAAGAGAAAGTAATGTTGAAGGGGAGGGGTTGTCAGATCAGAGACTGTTTTCTTGTGTTACGTGTGGAATTTTGAGCTTTGCTTGTGTTGCTATTATTCAACCAACAGAAGAAGCAGCCAGATATCTTATGTCGGCAGATTGTAGCTTTTTCAATGATTGGGTTGTTGGATCTGGATTGGCTAGTGAGGCGTTCCCGGTTGCAACTGGAGATCCAATTACTTCAAAAAATGCTCCTTGCACAGGATTGGAGGAATACAATGCCCCTGCTGGTTTATATGACGTGCTTGTTCAATCTGGTGATTATCAAATTCAGGTGGTTGATCAAGGTAATGAAGTGGTTTCAAATACTGAAATGCCGAGAAAGACTTCAGCTCTTGGGCTGTTAGCTTTGAATTATGGAAATTCATCTGACTCGGAGGAAGATCAGGTTGAACCAGATGTTCCTGTCTGTTCTGATGAACCGAACATGACAAACTGTTCTTTGGAAAGTAGATATAGAGACCAGAGTGCTAGTCCTCCTTCAAGAAACCCTTATGCTGGTACAGGTGGAGTTCACAGTCCCTCGTCACAAGGATCTGGTTGTGAGAATGAACTTCGTCTCCAAACTTTTGATCACTATGCGACAGATGGACGAAAAATAGCTAATTTCAAGGATAGCAGCCCTAAAAAATTTGACTGCTCTGCAGATTTCAAAACTAATAATTCTGCTTCCACAGCAACAGGATTTGGTAAGGCTATTGTACCAATACAGAAAACAAGCATGTCATTTCATCCAGGATGCGACGTAGACTCTTCTAGAATGCATGTATTCTGCCTTGAGCATGCTGTAGAGGTTGAGCAGCAGCTTCGCTCAATTGGAGGTGTCCATATATTACTCCTTTGTCATCCAGACTACCCCAGGATAGAGGATGAAGCAAAATCTATGGCAGAAGAACTGGGAATAAGTTATCTCTGGAATGATATGGCATTCATGAATGCCGCCAAGGAAGATGAGACGAGGATTCAGTTAGCTCTGGATAGCGAGGAGGCCATTGCTGGGAACGGGGACTGGGCTGTAAAGTTGGGGATCAATCTCTTCTACAGTGCCAGCCTAAGCCGCTCTCATCTTTATAGTAAGCAGATGCCATACAATTCTGTTATATACAAAGCATTTGGCCGGAGCTCTCCTGCTAGTTCACCCACAAGAATTGATGCCTATGGGAGGAGAGGTAGCAAGCCAAAAAAGGTAGTGGCAGGGAAATGGTGTGGTAAAGTGTGGATGTCAAACCAAGTTCATTCTTTTCTAGTAAAAAGGGATCCCGAGGAAGAAGTAGAAGTAGCAGAAGATGAAGAAGAGTGGACCTTCCGTGCTTGGGCAATGCCAGATGAGGATCATGAGGTAAAATCAGAAATCACACGCAAAACTGAGAAGACGGTTAAGAAGTATGCTAGGAAGAGGAAAATGACTGCTGATACTCGAACAACCAAGAAAGCTAAATGTTTTGATAAAGAAGATGCAGTTTCAGATTATTCAGTAGATGATAACTCTCCTCAGCAGCAAAGGAGGCTTCCTAAGAGCAAGCAAGCCAAACATAATGAGAGTGGCCCAACCAAGAAACCCAAGCGTATTGAGACAGAAGATGCAGTTTCAGGTGATTCAATGCAAGATAATGATTCTCTTCAGCAAAATGGGAGGTTTCTTCACAGCGAGCAAGTCAAGTATATTGAGAGAAGTGACGTTTCAGATGATTCAATGGGAGTTGAATCTCATCAGCAGCATAGGAGAACTGCTAAAAGTAAGCAATTCAAACCTGTGGAAACAGATGTGGTTTCAGATGATTCGTTTGAGGGTAGTTCTCATCAGCCGCAGAGGGTCCTTAGAAGCAAGACAACTAAATGCACTGGGAGAGAAAATTTGATTTCAGAGGATGTTCACGGGTTCAGTTCTCATCAACAACGAAGGAGCATTTCTAGAAGCAAGCAGGCCAGAGCCAGATTCATTGAGAGAGCAGATACCGCTCTGGATGAAACACCGGAAGATAATTTTCAGCGGCATAAGAGGATTCTTCGAAACAAGCAAACCAAACCAGAGACCCGTGGGAAAATGAGACAAGAAACCCCTCGCCAAGTGAAACGAGGGACTGTTCCTCTTGTGAAACAAGGTACCCGCACTCCAAGAAATCAACAAACCCCTCAGCAAACGAAGAAGCAGACACCTAGGCTCCGAAATAATCAGTCTGAGCAGAACAGCTTTGATTTATATGCTGAAGAGGAGACAGAAGGTGGGCCTAGCACGCGTCTTAGAAAAAGAGCTCCTAAGCCCTCAAAAGGCCCTGGAACCAAACCAAAAGAGCAGCAACAGACTGCTAGGAAAAAGGCAAAGAATGCTTCAGCAGGGAAAGCTCAAGGTGGCCGAAATGAAACAAAATTGAAGGAAGAGGATGCAGAATTCGTATGTGATTTTGAAGGCTGTACCATGAGTTTTGCCTCAAAACATGATCTTTCCTCCCACAAAAGAAACATATGTCCAGTCAAGGGGTGTGGAAAGAAATTCTTCTCGCACAAGTATCTGGTGCAACATCGTCGTGTTCACACAGATGATCGCCCCCTTCGATGCCCTTGGAAGGGCTGCAAGATGACATTCAAGTGGGCATGGGCTCGCACTGAGCACATTAGGGTTCACACAGGTGCTCGTCCGTATGTATGCGCTGAGCCAGGGTGTGCACAGACCTTCCGATTCGTGTCAGATTTCAGCCGTCACAAGCGCAAGACCGGGCATTCGGTGAAGAAGAGTAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008214 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009791 GO:0009826 GO:0009892 GO:0009987 GO:0010033 GO:0010228 GO:0010605 GO:0010639 GO:0014070 GO:0016043 GO:0016049 GO:0016569 GO:0016570 GO:0016577 GO:0019222 GO:0019538 GO:0022414 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032989 GO:0033043 GO:0033044 GO:0033169 GO:0033993 GO:0035065 GO:0035067 GO:0036211 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051276 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0099402 GO:1901564 GO:1901700 GO:1901983 GO:1901984 GO:1902275 GO:1905268 GO:2000756 GO:2000757 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JmjC JmjN zf-C2H2

Protein Analysis

1467

Amino Acids

163.76

Weight (kDa)

9.03

Isoelectric Point (pI)

56.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JmjN	PF02375	26 - 59	1.1e-14	jmjN domain
JmjC	PF02373	234 - 351	3.7e-35	JmjC domain, hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48430 AT3G48430
fragaria_vesca	FvH4_5g07090 FvH4_5g07090 FvH4_5g07090
malus_domestica	MD06G1159300.v1.1 MD14G1165600.v1.1
prunus_persica	Prupe.5G159200_v2.0.a1
pyrus_communis	pycom06g14210 pycom14g13810
rosa_chinensis	RchiOBHm_Chr7g0191461
rosa_laevigata	RLG00000004448
rosa_multiflora	Rmu_sc0002661.1_g000009
rosa_roxburghii	Rroxscaffold_157G00438400 Rroxscaffold_3G00263790
rosa_rugosa	Rorug06G0510400
rosa_samantha	Rh7AG118500 Rh7BG120500 Rh7CG123300 Rh7DG121400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1305, 1483
Acc65I	GGTACC	1 cut(s)	3761
AccB1I	GGYRCC	2 cut(s)	181, 3761
AccBSI	CCGCTC	3 cut(s)	357, 2718, 3617
AccI	GTMKAC	1 cut(s)	2406
AccII	CGCG	2 cut(s)	1189, 3895
AccIII	TCCGGA	1 cut(s)	76
AclWI	GGATC	9 cut(s)	104, 1576, 1795, 1823, 2200, 2693, 2909, 2922, 2997
AcoI	YGGCCR	2 cut(s)	2773, 4009
AcuI	CTGAAG	6 cut(s)	945, 1454, 1971, 3263, 3885, 3972
AfaI	GTAC	9 cut(s)	83, 571, 849, 1272, 1581, 2161, 2361, 3763, 4072
AflIII	ACRYGT	3 cut(s)	1378, 1679, 3893
AgeI	ACCGGT	1 cut(s)	222
AhlI	ACTAGT	1 cut(s)	572
AjiI	CACGTC	2 cut(s)	795, 1900
AjnI	CCWGG	7 cut(s)	375, 526, 1405, 2392, 2516, 3931, 4312
AleI	CACNNNNGTG	1 cut(s)	4284
AloI	GAACNNNNNNTCC	2 cut(s)	2202, 2234
Alw21I	GWGCWC	6 cut(s)	339, 2783, 3913, 4269, 4291, 4324
Alw44I	GTGCAC	2 cut(s)	335, 4320
AlwI	GGATC	9 cut(s)	104, 1576, 1795, 1823, 2200, 2693, 2909, 2922, 2997
AlwNI	CAGNNNCTG	2 cut(s)	1466, 1663
Ama87I	CYCGRG	2 cut(s)	237, 2918
Aor13HI	TCCGGA	1 cut(s)	76
ApaLI	GTGCAC	2 cut(s)	335, 4320
ArsI	GACNNNNNNTTYG	2 cut(s)	4360, 4392
AsiGI	ACCGGT	1 cut(s)	222
Asp700I	GAANNNNTTC	3 cut(s)	1183, 1984, 4151
Asp718I	GGTACC	1 cut(s)	3761
AspA2I	CCTAGG	1 cut(s)	3815
AspLEI	GCGC	3 cut(s)	1191, 4307, 4365
AspS9I	GGNCC	6 cut(s)	745, 2958, 3203, 3472, 3884, 3929
AsuC2I	CCSGG	6 cut(s)	38, 292, 681, 976, 1814, 4372
AsuHPI	GGTGA	6 cut(s)	617, 1314, 1928, 2787, 3263, 4393
AsuII	TTCGAA	3 cut(s)	384, 1595, 3667
AvaI	CYCGRG	2 cut(s)	237, 2918
AvaII	GGWCC	3 cut(s)	745, 2958, 3472
AvrII	CCTAGG	1 cut(s)	3815
AxyI	CCTNAGG	1 cut(s)	1453
BaeGI	GKGCMC	3 cut(s)	266, 339, 4324
BamHI	GGATCC	1 cut(s)	2914
BanI	GGYRCC	2 cut(s)	181, 3761
BanII	GRGCYC	4 cut(s)	279, 2783, 3913, 4258
BbsI	GAAGAC	4 cut(s)	206, 797, 911, 3035
Bbv12I	GWGCWC	6 cut(s)	339, 2783, 3913, 4269, 4291, 4324
BbvCI	CCTCAGC	2 cut(s)	3150, 3792
BccI	CCATC	3 cut(s)	1120, 1463, 2240
BceAI	ACGGC	3 cut(s)	344, 1600, 4338
BcgI	CGANNNNNNTGC	4 cut(s)	2447, 2481, 4163, 4197
BciT130I	CCWGG	7 cut(s)	377, 528, 1407, 2394, 2518, 3933, 4314
BclI	TGATCA	2 cut(s)	1939, 2230
BcnI	CCSGG	6 cut(s)	38, 292, 681, 976, 1814, 4372
BcuI	ACTAGT	1 cut(s)	572
BfmI	CTRYAG	5 cut(s)	69, 955, 2301, 2445, 2698
BfuAI	ACCTGC	2 cut(s)	1305, 1483
BlnI	CCTAGG	1 cut(s)	3815
BlpI	GCTNAGC	1 cut(s)	4308
BmcAI	AGTACT	1 cut(s)	571
Bme18I	GGWCC	3 cut(s)	745, 2958, 3472
BmeT110I	CYCGRG	2 cut(s)	237, 2918
BmgBI	CACGTC	2 cut(s)	795, 1900
BmgT120I	GGNCC	6 cut(s)	745, 2958, 3203, 3472, 3884, 3929
BmiI	GGNNCC	6 cut(s)	183, 2916, 3473, 3763, 3821, 3937
BmrI	ACTGGG	4 cut(s)	145, 2564, 2677, 3510
BmuI	ACTGGG	4 cut(s)	145, 2564, 2677, 3510
BpiI	GAAGAC	4 cut(s)	206, 797, 911, 3035
BpmI	CTGGAG	1 cut(s)	1845
Bpu10I	CCTNAGC	4 cut(s)	2711, 3150, 3792, 3915
Bpu1102I	GCTNAGC	1 cut(s)	4308
Bpu14I	TTCGAA	3 cut(s)	384, 1595, 3667
BpuEI	CTTGAG	3 cut(s)	439, 2456, 3987
BpuMI	CCSGG	6 cut(s)	38, 292, 681, 976, 1814, 4372
BsaAI	YACGTR	2 cut(s)	1379, 1680
BsaBI	GATNNNNATC	1 cut(s)	2988
BsaI	GGTCTC	4 cut(s)	231, 1478, 2112, 3683
BsaWI	WCCGGW	3 cut(s)	76, 222, 3631
Bse118I	RCCGGY	2 cut(s)	178, 222
Bse1I	ACTGG	9 cut(s)	151, 479, 545, 1018, 1828, 2559, 2672, 3505, 4127
Bse21I	CCTNAGG	1 cut(s)	1453
Bse3DI	GCAATG	2 cut(s)	2649, 2982
Bse8I	GATNNNNATC	1 cut(s)	2988
BseAI	TCCGGA	1 cut(s)	76
BseBI	CCWGG	7 cut(s)	377, 528, 1407, 2394, 2518, 3933, 4314
BseJI	GATNNNNATC	1 cut(s)	2988
BseMI	GCAATG	2 cut(s)	2649, 2982
BseNI	ACTGG	9 cut(s)	151, 479, 545, 1018, 1828, 2559, 2672, 3505, 4127
BseRI	GAGGAG	6 cut(s)	686, 848, 2657, 2836, 3138, 3884
BseSI	GKGCMC	3 cut(s)	266, 339, 4324
BseYI	CCCAGC	1 cut(s)	2654
Bsh1236I	CGCG	2 cut(s)	1189, 3895
BshNI	GGYRCC	2 cut(s)	181, 3761
BshTI	ACCGGT	1 cut(s)	222
BsiHKAI	GWGCWC	6 cut(s)	339, 2783, 3913, 4269, 4291, 4324
BsiHKCI	CYCGRG	2 cut(s)	237, 2918
BslFI	GGGAC	4 cut(s)	602, 2163, 2678, 3751
BsmBI	CGTCTC	2 cut(s)	2222, 2606
BsmFI	GGGAC	4 cut(s)	602, 2163, 2678, 3751
BsmI	GAATGC	6 cut(s)	1185, 2424, 2585, 2599, 3988, 4375
Bso31I	GGTCTC	4 cut(s)	231, 1478, 2112, 3683
BsoBI	CYCGRG	2 cut(s)	237, 2918
Bsp119I	TTCGAA	3 cut(s)	384, 1595, 3667
Bsp1286I	GDGCHC	9 cut(s)	266, 279, 339, 2783, 3913, 4258, 4269, 4291, 4324
Bsp13I	TCCGGA	1 cut(s)	76
Bsp1407I	TGTACA	2 cut(s)	1270, 1579
Bsp1720I	GCTNAGC	1 cut(s)	4308
Bsp19I	CCATGG	2 cut(s)	50, 1417
BspEI	TCCGGA	1 cut(s)	76
BspFNI	CGCG	2 cut(s)	1189, 3895
BspHI	TCATGA	3 cut(s)	1476, 2589, 2992
BspLI	GGNNCC	6 cut(s)	183, 2916, 3473, 3763, 3821, 3937
BspMAI	CTGCAG	2 cut(s)	959, 2305
BspMI	ACCTGC	2 cut(s)	1305, 1483
BspPI	GGATC	9 cut(s)	104, 1576, 1795, 1823, 2200, 2693, 2909, 2922, 2997
BspQI	GCTCTTC	1 cut(s)	392
BspT104I	TTCGAA	3 cut(s)	384, 1595, 3667
BspT107I	GGYRCC	2 cut(s)	181, 3761
BspTNI	GGTCTC	4 cut(s)	231, 1478, 2112, 3683
BsrBI	CCGCTC	3 cut(s)	357, 2718, 3617
BsrDI	GCAATG	2 cut(s)	2649, 2982
BsrFI	RCCGGY	2 cut(s)	178, 222
BsrGI	TGTACA	2 cut(s)	1270, 1579
BsrI	ACTGG	9 cut(s)	151, 479, 545, 1018, 1828, 2559, 2672, 3505, 4127
BssAI	RCCGGY	2 cut(s)	178, 222
BssT1I	CCWWGG	6 cut(s)	50, 895, 1417, 2601, 3815, 4217
Bst2UI	CCWGG	7 cut(s)	377, 528, 1407, 2394, 2518, 3933, 4314
BstAPI	GCANNNNNTGC	2 cut(s)	1088, 3983
BstAUI	TGTACA	2 cut(s)	1270, 1579
BstBAI	YACGTR	2 cut(s)	1379, 1680
BstBI	TTCGAA	3 cut(s)	384, 1595, 3667
BstDSI	CCRYGG	5 cut(s)	50, 326, 1205, 1417, 3694
BstEII	GGTNACC	1 cut(s)	1320
BstENI	CCTNNNNNAGG	2 cut(s)	1857, 2818
BstFNI	CGCG	2 cut(s)	1189, 3895
BstHHI	GCGC	3 cut(s)	1191, 4307, 4365
BstNI	CCWGG	7 cut(s)	377, 528, 1407, 2394, 2518, 3933, 4314
BstNSI	RCATGY	5 cut(s)	526, 740, 2383, 2426, 2444
BstPI	GGTNACC	1 cut(s)	1320
BstSFI	CTRYAG	5 cut(s)	69, 955, 2301, 2445, 2698
BstSLI	GKGCMC	3 cut(s)	266, 339, 4324
BstUI	CGCG	2 cut(s)	1189, 3895
BstV2I	GAAGAC	4 cut(s)	206, 797, 911, 3035
BstX2I	RGATCY	6 cut(s)	109, 1568, 1787, 1828, 2192, 2914
BstYI	RGATCY	6 cut(s)	109, 1568, 1787, 1828, 2192, 2914
Bsu36I	CCTNAGG	1 cut(s)	1453
BtgI	CCRYGG	5 cut(s)	50, 326, 1205, 1417, 3694
BtrI	CACGTC	2 cut(s)	795, 1900
BtsIMutI	CAGTG	6 cut(s)	552, 1011, 1518, 2707, 3498, 4260
BveI	ACCTGC	2 cut(s)	1305, 1483
CaiI	CAGNNNCTG	2 cut(s)	1466, 1663
CciI	TCATGA	3 cut(s)	1476, 2589, 2992
CfoI	GCGC	3 cut(s)	1191, 4307, 4365
Cfr10I	RCCGGY	2 cut(s)	178, 222
Cfr13I	GGNCC	6 cut(s)	745, 2958, 3203, 3472, 3884, 3929
CseI	GACGC	2 cut(s)	824, 3884
Csp6I	GTAC	9 cut(s)	82, 570, 848, 1271, 1580, 2160, 2360, 3762, 4071
CspAI	ACCGGT	1 cut(s)	222
CspCI	CAANNNNNGTGG	6 cut(s)	74, 109, 2788, 2823, 4120, 4155
CviQI	GTAC	9 cut(s)	82, 570, 848, 1271, 1580, 2160, 2360, 3762, 4071
EaeI	YGGCCR	2 cut(s)	2773, 4009
Ecl136II	GAGCTC	2 cut(s)	2781, 3911
Eco130I	CCWWGG	6 cut(s)	50, 895, 1417, 2601, 3815, 4217
Eco24I	GRGCYC	4 cut(s)	279, 2783, 3913, 4258
Eco31I	GGTCTC	4 cut(s)	231, 1478, 2112, 3683
Eco32I	GATATC	1 cut(s)	1742
Eco47I	GGWCC	3 cut(s)	745, 2958, 3472
Eco53kI	GAGCTC	2 cut(s)	2781, 3911
Eco57I	CTGAAG	6 cut(s)	945, 1454, 1971, 3263, 3885, 3972
Eco81I	CCTNAGG	1 cut(s)	1453
Eco88I	CYCGRG	2 cut(s)	237, 2918
Eco91I	GGTNACC	1 cut(s)	1320
EcoICRI	GAGCTC	2 cut(s)	2781, 3911
EcoNI	CCTNNNNNAGG	2 cut(s)	1857, 2818
EcoO109I	RGGNCCY	2 cut(s)	3472, 3929
EcoO65I	GGTNACC	1 cut(s)	1320
EcoRI	GAATTC	4 cut(s)	380, 945, 1591, 4046
EcoRII	CCWGG	7 cut(s)	375, 526, 1405, 2392, 2516, 3931, 4312
EcoRV	GATATC	1 cut(s)	1742
EcoT14I	CCWWGG	6 cut(s)	50, 895, 1417, 2601, 3815, 4217
EcoT22I	ATGCAT	1 cut(s)	2424
EcoT38I	GRGCYC	4 cut(s)	279, 2783, 3913, 4258
ErhI	CCWWGG	6 cut(s)	50, 895, 1417, 2601, 3815, 4217
Esp3I	CGTCTC	2 cut(s)	2222, 2606
FalI	AAGNNNNNCTT	8 cut(s)	401, 433, 1168, 1200, 2134, 2166, 4136, 4168
FaqI	GGGAC	4 cut(s)	602, 2163, 2678, 3751
FauI	CCCGC	2 cut(s)	235, 3773
FauNDI	CATATG	2 cut(s)	777, 4121
FbaI	TGATCA	2 cut(s)	1939, 2230
FblI	GTMKAC	1 cut(s)	2406
FriOI	GRGCYC	4 cut(s)	279, 2783, 3913, 4258
GlaI	GCGC	3 cut(s)	1190, 4306, 4364
GsaI	CCCAGC	1 cut(s)	2658
GsuI	CTGGAG	1 cut(s)	1845
HgaI	GACGC	2 cut(s)	824, 3884
HhaI	GCGC	3 cut(s)	1191, 4307, 4365
Hin6I	GCGC	3 cut(s)	1189, 4305, 4363
HinP1I	GCGC	3 cut(s)	1189, 4305, 4363
HphI	GGTGA	6 cut(s)	617, 1314, 1928, 2787, 3263, 4393
Hpy99I	CGWCG	3 cut(s)	1104, 2405, 4185
HpyCH4IV	ACGT	6 cut(s)	794, 1378, 1679, 1899, 2403, 3336
HpySE526I	ACGT	6 cut(s)	794, 1378, 1679, 1899, 2403, 3336
HspAI	GCGC	3 cut(s)	1189, 4305, 4363
Kpn2I	TCCGGA	1 cut(s)	76
KpnI	GGTACC	1 cut(s)	3765
Ksp22I	TGATCA	2 cut(s)	1939, 2230
LguI	GCTCTTC	1 cut(s)	392
LmnI	GCTCC	7 cut(s)	79, 782, 1855, 2778, 3561, 3825, 3916
MaeII	ACGT	6 cut(s)	794, 1378, 1679, 1899, 2403, 3336
MbiI	CCGCTC	3 cut(s)	357, 2718, 3617
MfeI	CAATTG	2 cut(s)	207, 2472
MflI	RGATCY	6 cut(s)	109, 1568, 1787, 1828, 2192, 2914
MhlI	GDGCHC	9 cut(s)	266, 279, 339, 2783, 3913, 4258, 4269, 4291, 4324
MluI	ACGCGT	1 cut(s)	3893
MlyI	GAGTC	3 cut(s)	592, 2024, 2402
MmeI	TCCRAC	1 cut(s)	1765
Mph1103I	ATGCAT	1 cut(s)	2424
MroI	TCCGGA	1 cut(s)	76
MroXI	GAANNNNTTC	3 cut(s)	1183, 1984, 4151
MseI	TTAA	6 cut(s)	1032, 1257, 1394, 1497, 1562, 3036
MslI	CAYNNNNRTG	5 cut(s)	545, 4182, 4194, 4243, 4284
MspA1I	CMGCKG	3 cut(s)	454, 723, 3649
MunI	CAATTG	2 cut(s)	207, 2472
Mva1269I	GAATGC	6 cut(s)	1185, 2424, 2585, 2599, 3988, 4375
MvaI	CCWGG	7 cut(s)	377, 528, 1407, 2394, 2518, 3933, 4314
MvnI	CGCG	2 cut(s)	1189, 3895
NciI	CCSGG	6 cut(s)	38, 292, 681, 976, 1814, 4372
NcoI	CCATGG	2 cut(s)	50, 1417
NdeI	CATATG	2 cut(s)	777, 4121
NlaIV	GGNNCC	6 cut(s)	183, 2916, 3473, 3763, 3821, 3937
NmeAIII	GCCGAG	1 cut(s)	2001
NmuCI	GTSAC	6 cut(s)	595, 988, 1320, 2184, 3332, 4355
NsiI	ATGCAT	1 cut(s)	2424
NspI	RCATGY	5 cut(s)	526, 740, 2383, 2426, 2444
NspV	TTCGAA	3 cut(s)	384, 1595, 3667
OliI	CACNNNNGTG	1 cut(s)	4284
PaeI	GCATGC	1 cut(s)	2444
PagI	TCATGA	3 cut(s)	1476, 2589, 2992
PciSI	GCTCTTC	1 cut(s)	392
PcsI	WCGNNNNNNNCGW	3 cut(s)	257, 1213, 4207
PctI	GAATGC	6 cut(s)	1185, 2424, 2585, 2599, 3988, 4375
PdmI	GAANNNNTTC	3 cut(s)	1183, 1984, 4151
PfoI	TCCNGGA	2 cut(s)	375, 2392
PinAI	ACCGGT	1 cut(s)	222
PleI	GAGTC	3 cut(s)	592, 2024, 2402
PpsI	GAGTC	3 cut(s)	592, 2024, 2402
Ppu21I	YACGTR	2 cut(s)	1379, 1680
PpuMI	RGGWCCY	1 cut(s)	3472
Psp124BI	GAGCTC	2 cut(s)	2783, 3913
Psp5II	RGGWCCY	1 cut(s)	3472
Psp6I	CCWGG	7 cut(s)	375, 526, 1405, 2392, 2516, 3931, 4312
PspEI	GGTNACC	1 cut(s)	1320
PspFI	CCCAGC	1 cut(s)	2654
PspGI	CCWGG	7 cut(s)	375, 526, 1405, 2392, 2516, 3931, 4312
PspN4I	GGNNCC	6 cut(s)	183, 2916, 3473, 3763, 3821, 3937
PspPI	GGNCC	6 cut(s)	745, 2958, 3203, 3472, 3884, 3929
PspPPI	RGGWCCY	1 cut(s)	3472
PstI	CTGCAG	2 cut(s)	959, 2305
PstNI	CAGNNNCTG	2 cut(s)	1466, 1663
PsuI	RGATCY	6 cut(s)	109, 1568, 1787, 1828, 2192, 2914
PvuII	CAGCTG	1 cut(s)	723
RsaI	GTAC	9 cut(s)	83, 571, 849, 1272, 1581, 2161, 2361, 3763, 4072
RsaNI	GTAC	9 cut(s)	82, 570, 848, 1271, 1580, 2160, 2360, 3762, 4071
RseI	CAYNNNNRTG	5 cut(s)	545, 4182, 4194, 4243, 4284
SacI	GAGCTC	2 cut(s)	2783, 3913
SapI	GCTCTTC	1 cut(s)	392
SaqAI	TTAA	6 cut(s)	1032, 1257, 1394, 1497, 1562, 3036
Sau96I	GGNCC	6 cut(s)	745, 2958, 3203, 3472, 3884, 3929
ScaI	AGTACT	1 cut(s)	571
SchI	GAGTC	3 cut(s)	592, 2024, 2402
SduI	GDGCHC	9 cut(s)	266, 279, 339, 2783, 3913, 4258, 4269, 4291, 4324
SfcI	CTRYAG	5 cut(s)	69, 955, 2301, 2445, 2698
SfuI	TTCGAA	3 cut(s)	384, 1595, 3667
SgrAI	CRCCGGYG	1 cut(s)	178
SinI	GGWCC	3 cut(s)	745, 2958, 3472
SmiMI	CAYNNNNRTG	5 cut(s)	545, 4182, 4194, 4243, 4284
SmlI	CTYRAG	3 cut(s)	418, 2435, 4002
SmoI	CTYRAG	3 cut(s)	418, 2435, 4002
SpeI	ACTAGT	1 cut(s)	572
SphI	GCATGC	1 cut(s)	2444
SspI	AATATT	1 cut(s)	1054
SstI	GAGCTC	2 cut(s)	2783, 3913
StyI	CCWWGG	6 cut(s)	50, 895, 1417, 2601, 3815, 4217
TaiI	ACGT	6 cut(s)	797, 1381, 1682, 1902, 2406, 3339
TaqI	TCGA	9 cut(s)	135, 384, 635, 1099, 1216, 1595, 3076, 3667, 4210
TatI	WGTACW	3 cut(s)	569, 1270, 1579
TauI	GCSGC	9 cut(s)	8, 178, 187, 360, 454, 2600, 2718, 3466, 3652
Tru1I	TTAA	6 cut(s)	1032, 1257, 1394, 1497, 1562, 3036
Tru9I	TTAA	6 cut(s)	1032, 1257, 1394, 1497, 1562, 3036
TscAI	CASTG	6 cut(s)	552, 1018, 1518, 2707, 3505, 4267
TseFI	GTSAC	6 cut(s)	595, 988, 1320, 2184, 3332, 4355
Tsp45I	GTSAC	6 cut(s)	595, 988, 1320, 2184, 3332, 4355
TspGWI	ACGGA	3 cut(s)	1222, 2954, 4284
TspRI	CASTG	6 cut(s)	552, 1018, 1518, 2707, 3505, 4267
VneI	GTGCAC	2 cut(s)	335, 4320
VpaK11BI	GGWCC	3 cut(s)	745, 2958, 3472
XagI	CCTNNNNNAGG	2 cut(s)	1857, 2818
XbaI	TCTAGA	2 cut(s)	2414, 3569
XceI	RCATGY	5 cut(s)	526, 740, 2383, 2426, 2444
XmaJI	CCTAGG	1 cut(s)	3815
XmiI	GTMKAC	1 cut(s)	2406
XmnI	GAANNNNTTC	3 cut(s)	1183, 1984, 4151
ZrmI	AGTACT	1 cut(s)	571
Zsp2I	ATGCAT	1 cut(s)	2424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.