lysine-specific demethylase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G48430 AT3G48430 |
| fragaria_vesca | FvH4_5g07090 FvH4_5g07090 FvH4_5g07090 |
| malus_domestica | MD06G1159300.v1.1 MD14G1165600.v1.1 |
| prunus_persica | Prupe.5G159200_v2.0.a1 |
| pyrus_communis | pycom06g14210 pycom14g13810 |
| rosa_chinensis | RchiOBHm_Chr7g0191461 |
| rosa_laevigata | RLG00000004448 |
| rosa_multiflora | Rmu_sc0002661.1_g000009 |
| rosa_roxburghii | Rroxscaffold_157G00438400 Rroxscaffold_3G00263790 |
| rosa_rugosa | Rorug06G0510400 |
| rosa_samantha | Rh7AG118500 Rh7BG120500 Rh7CG123300 Rh7DG121400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 4878 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 4121 |
| Acc36I | ACCTGC | 3 cut(s) | 285, 772, 4666 |
| AccB1I | GGYRCC | 5 cut(s) | 1814, 1935, 3729, 3803, 4798 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 3347, 3431, 4048 |
| AccBSI | CCGCTC | 1 cut(s) | 2157 |
| AccII | CGCG | 3 cut(s) | 1957, 3361, 4073 |
| AclWI | GGATC | 9 cut(s) | 90, 1097, 1214, 1613, 2132, 2361, 4085, 4630, 4684 |
| AcoI | YGGCCR | 1 cut(s) | 45 |
| AcsI | RAATTY | 8 cut(s) | 317, 972, 3028, 3563, 3665, 4910, 5108, 5126 |
| AcuI | CTGAAG | 5 cut(s) | 282, 672, 3498, 3522, 4542 |
| AcvI | CACGTG | 1 cut(s) | 76 |
| AdeI | CACNNNGTG | 1 cut(s) | 5039 |
| AfaI | GTAC | 8 cut(s) | 669, 874, 1132, 1159, 1420, 1609, 1708, 3795 |
| AfeI | AGCGCT | 1 cut(s) | 901 |
| AflII | CTTAAG | 2 cut(s) | 3167, 4495 |
| AflIII | ACRYGT | 3 cut(s) | 26, 715, 965 |
| AhdI | GACNNNNNGTC | 4 cut(s) | 2249, 4015, 4456, 4633 |
| AjiI | CACGTC | 1 cut(s) | 1505 |
| AleI | CACNNNNGTG | 1 cut(s) | 3801 |
| Alw21I | GWGCWC | 3 cut(s) | 3590, 3786, 3921 |
| Alw44I | GTGCAC | 1 cut(s) | 3586 |
| AlwI | GGATC | 9 cut(s) | 90, 1097, 1214, 1613, 2132, 2361, 4085, 4630, 4684 |
| AlwNI | CAGNNNCTG | 7 cut(s) | 2246, 2549, 2945, 3431, 3830, 4048, 4862 |
| Ama87I | CYCGRG | 1 cut(s) | 17 |
| Aor51HI | AGCGCT | 1 cut(s) | 901 |
| AoxI | GGCC | 8 cut(s) | 45, 1686, 1870, 2264, 3099, 4499, 5047, 5114 |
| ApaLI | GTGCAC | 1 cut(s) | 3586 |
| ApoI | RAATTY | 8 cut(s) | 317, 972, 3028, 3563, 3665, 4910, 5108, 5126 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1582, 1614, 4584, 4616 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 3082, 3668 |
| AspLEI | GCGC | 1 cut(s) | 902 |
| AsuC2I | CCSGG | 2 cut(s) | 18, 19 |
| AsuII | TTCGAA | 1 cut(s) | 2725 |
| AsuNHI | GCTAGC | 1 cut(s) | 2228 |
| AvaI | CYCGRG | 1 cut(s) | 17 |
| AvaII | GGWCC | 7 cut(s) | 1124, 2243, 2630, 3289, 3350, 4114, 4655 |
| AxyI | CCTNAGG | 1 cut(s) | 2247 |
| BaeGI | GKGCMC | 6 cut(s) | 147, 1185, 1819, 3590, 3734, 3808 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 5001, 5034 |
| BalI | TGGCCA | 1 cut(s) | 47 |
| BanI | GGYRCC | 5 cut(s) | 1814, 1935, 3729, 3803, 4798 |
| BanII | GRGCYC | 2 cut(s) | 3775, 3921 |
| BbrPI | CACGTG | 1 cut(s) | 76 |
| BbsI | GAAGAC | 5 cut(s) | 134, 248, 3251, 3506, 3890 |
| Bbv12I | GWGCWC | 3 cut(s) | 3590, 3786, 3921 |
| BbvCI | CCTCAGC | 1 cut(s) | 3333 |
| BceAI | ACGGC | 5 cut(s) | 143, 1857, 3219, 3240, 3855 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 3680, 3714, 4154, 4188 |
| BciVI | GTATCC | 1 cut(s) | 5029 |
| BclI | TGATCA | 3 cut(s) | 2890, 5131, 5173 |
| BcnI | CCSGG | 2 cut(s) | 18, 19 |
| BfaI | CTAG | 9 cut(s) | 500, 1389, 1749, 2229, 2378, 2484, 3354, 4811, 5223 |
| BfmI | CTRYAG | 9 cut(s) | 292, 1614, 1779, 2137, 2238, 2502, 2937, 3161, 5013 |
| BfoI | RGCGCY | 1 cut(s) | 903 |
| BfrI | CTTAAG | 2 cut(s) | 3167, 4495 |
| BfuAI | ACCTGC | 3 cut(s) | 285, 772, 4666 |
| BfuI | GTATCC | 1 cut(s) | 5029 |
| BmcAI | AGTACT | 1 cut(s) | 874 |
| Bme18I | GGWCC | 7 cut(s) | 1124, 2243, 2630, 3289, 3350, 4114, 4655 |
| BmeRI | GACNNNNNGTC | 4 cut(s) | 2249, 4015, 4456, 4633 |
| BmeT110I | CYCGRG | 1 cut(s) | 17 |
| BmgBI | CACGTC | 1 cut(s) | 1505 |
| BmrI | ACTGGG | 3 cut(s) | 2003, 2116, 3897 |
| BmtI | GCTAGC | 1 cut(s) | 2232 |
| BmuI | ACTGGG | 3 cut(s) | 2003, 2116, 3897 |
| BpiI | GAAGAC | 5 cut(s) | 134, 248, 3251, 3506, 3890 |
| BpmI | CTGGAG | 3 cut(s) | 1446, 2208, 4551 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2150, 3333 |
| Bpu14I | TTCGAA | 1 cut(s) | 2725 |
| BpuEI | CTTGAG | 4 cut(s) | 1790, 2582, 2978, 4740 |
| BpuMI | CCSGG | 2 cut(s) | 18, 19 |
| BsaAI | YACGTR | 3 cut(s) | 27, 76, 716 |
| BsaBI | GATNNNNATC | 3 cut(s) | 2123, 2793, 4681 |
| BsaI | GGTCTC | 3 cut(s) | 3194, 4023, 5053 |
| BsaWI | WCCGGW | 2 cut(s) | 3142, 3849 |
| Bse21I | CCTNAGG | 1 cut(s) | 2247 |
| Bse3DI | GCAATG | 7 cut(s) | 390, 871, 1495, 1939, 2088, 2412, 4312 |
| Bse8I | GATNNNNATC | 3 cut(s) | 2123, 2793, 4681 |
| BseJI | GATNNNNATC | 3 cut(s) | 2123, 2793, 4681 |
| BseMI | GCAATG | 7 cut(s) | 390, 871, 1495, 1939, 2088, 2412, 4312 |
| BseMII | CTCAG | 7 cut(s) | 393, 2238, 2445, 3324, 3771, 4869, 5027 |
| BseSI | GKGCMC | 6 cut(s) | 147, 1185, 1819, 3590, 3734, 3808 |
| BseYI | CCCAGC | 3 cut(s) | 311, 2093, 3270 |
| BsgI | GTGCAG | 3 cut(s) | 3843, 4683, 4812 |
| Bsh1236I | CGCG | 3 cut(s) | 1957, 3361, 4073 |
| BshFI | GGCC | 8 cut(s) | 47, 1688, 1872, 2266, 3101, 4501, 5049, 5116 |
| BshNI | GGYRCC | 5 cut(s) | 1814, 1935, 3729, 3803, 4798 |
| BsiHKAI | GWGCWC | 3 cut(s) | 3590, 3786, 3921 |
| BsiHKCI | CYCGRG | 1 cut(s) | 17 |
| BsiSI | CCGG | 3 cut(s) | 18, 3143, 3850 |
| BslFI | GGGAC | 6 cut(s) | 1110, 2527, 3795, 4605, 4873, 4976 |
| BsmBI | CGTCTC | 2 cut(s) | 2651, 4155 |
| BsmFI | GGGAC | 6 cut(s) | 1110, 2527, 3795, 4605, 4873, 4976 |
| BsmI | GAATGC | 5 cut(s) | 1758, 3514, 3538, 3892, 4487 |
| BsnI | GGCC | 8 cut(s) | 47, 1688, 1872, 2266, 3101, 4501, 5049, 5116 |
| Bso31I | GGTCTC | 3 cut(s) | 3194, 4023, 5053 |
| BsoBI | CYCGRG | 1 cut(s) | 17 |
| Bsp119I | TTCGAA | 1 cut(s) | 2725 |
| Bsp1286I | GDGCHC | 9 cut(s) | 147, 1185, 1819, 3590, 3734, 3775, 3786, 3808, 3921 |
| Bsp1407I | TGTACA | 1 cut(s) | 1130 |
| Bsp19I | CCATGG | 1 cut(s) | 4540 |
| BspANI | GGCC | 8 cut(s) | 47, 1688, 1872, 2266, 3101, 4501, 5049, 5116 |
| BspCNI | CTCAG | 7 cut(s) | 394, 2239, 2446, 3325, 3772, 4868, 5028 |
| BspFNI | CGCG | 3 cut(s) | 1957, 3361, 4073 |
| BspHI | TCATGA | 4 cut(s) | 85, 753, 2356, 3706 |
| BspMAI | CTGCAG | 5 cut(s) | 296, 2242, 2941, 3165, 5017 |
| BspMI | ACCTGC | 3 cut(s) | 285, 772, 4666 |
| BspOI | GCTAGC | 1 cut(s) | 2232 |
| BspPI | GGATC | 9 cut(s) | 90, 1097, 1214, 1613, 2132, 2361, 4085, 4630, 4684 |
| BspT104I | TTCGAA | 1 cut(s) | 2725 |
| BspT107I | GGYRCC | 5 cut(s) | 1814, 1935, 3729, 3803, 4798 |
| BspTI | CTTAAG | 2 cut(s) | 3167, 4495 |
| BspTNI | GGTCTC | 3 cut(s) | 3194, 4023, 5053 |
| BsrBI | CCGCTC | 1 cut(s) | 2157 |
| BsrDI | GCAATG | 7 cut(s) | 390, 871, 1495, 1939, 2088, 2412, 4312 |
| BsrGI | TGTACA | 1 cut(s) | 1130 |
| BssT1I | CCWWGG | 2 cut(s) | 3734, 4540 |
| Bst6I | CTCTTC | 7 cut(s) | 2138, 2483, 2582, 2727, 3546, 4217, 4293 |
| BstAFI | CTTAAG | 2 cut(s) | 3167, 4495 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2549 |
| BstAUI | TGTACA | 1 cut(s) | 1130 |
| BstBAI | YACGTR | 3 cut(s) | 27, 76, 716 |
| BstBI | TTCGAA | 1 cut(s) | 2725 |
| BstDSI | CCRYGG | 3 cut(s) | 159, 1955, 4540 |
| BstFNI | CGCG | 3 cut(s) | 1957, 3361, 4073 |
| BstH2I | RGCGCY | 1 cut(s) | 903 |
| BstHHI | GCGC | 1 cut(s) | 902 |
| BstNSI | RCATGY | 4 cut(s) | 969, 1760, 1778, 4825 |
| BstSFI | CTRYAG | 9 cut(s) | 292, 1614, 1779, 2137, 2238, 2502, 2937, 3161, 5013 |
| BstSLI | GKGCMC | 6 cut(s) | 147, 1185, 1819, 3590, 3734, 3808 |
| BstUI | CGCG | 3 cut(s) | 1957, 3361, 4073 |
| BstV2I | GAAGAC | 5 cut(s) | 134, 248, 3251, 3506, 3890 |
| BstX2I | RGATCY | 4 cut(s) | 1102, 1219, 1618, 4622 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3109 |
| BstYI | RGATCY | 4 cut(s) | 1102, 1219, 1618, 4622 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2247 |
| BsuI | GTATCC | 1 cut(s) | 5029 |
| BsuRI | GGCC | 8 cut(s) | 47, 1688, 1872, 2266, 3101, 4501, 5049, 5116 |
| BtgI | CCRYGG | 3 cut(s) | 159, 1955, 4540 |
| BtrI | CACGTC | 1 cut(s) | 1505 |
| BtsI | GCAGTG | 4 cut(s) | 2676, 3158, 3483, 3549 |
| BveI | ACCTGC | 3 cut(s) | 285, 772, 4666 |
| CaiI | CAGNNNCTG | 7 cut(s) | 2246, 2549, 2945, 3431, 3830, 4048, 4862 |
| CciI | TCATGA | 4 cut(s) | 85, 753, 2356, 3706 |
| CfoI | GCGC | 1 cut(s) | 902 |
| Cfr42I | CCGCGG | 1 cut(s) | 1958 |
| Cfr9I | CCCGGG | 1 cut(s) | 17 |
| CseI | GACGC | 3 cut(s) | 238, 3006, 4079 |
| Csp6I | GTAC | 8 cut(s) | 668, 873, 1131, 1158, 1419, 1608, 1707, 3794 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3637, 3672 |
| CviQI | GTAC | 8 cut(s) | 668, 873, 1131, 1158, 1419, 1608, 1707, 3794 |
| DraI | TTTAAA | 2 cut(s) | 4429, 4975 |
| DraIII | CACNNNGTG | 1 cut(s) | 5039 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 4121 |
| DriI | GACNNNNNGTC | 4 cut(s) | 2249, 4015, 4456, 4633 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 4121 |
| EaeI | YGGCCR | 1 cut(s) | 45 |
| Eam1104I | CTCTTC | 7 cut(s) | 2138, 2483, 2582, 2727, 3546, 4217, 4293 |
| Eam1105I | GACNNNNNGTC | 4 cut(s) | 2249, 4015, 4456, 4633 |
| EarI | CTCTTC | 7 cut(s) | 2138, 2483, 2582, 2727, 3546, 4217, 4293 |
| EciI | GGCGGA | 3 cut(s) | 2824, 4202, 4232 |
| Ecl136II | GAGCTC | 1 cut(s) | 3919 |
| Eco130I | CCWWGG | 2 cut(s) | 3734, 4540 |
| Eco147I | AGGCCT | 1 cut(s) | 2266 |
| Eco24I | GRGCYC | 2 cut(s) | 3775, 3921 |
| Eco31I | GGTCTC | 3 cut(s) | 3194, 4023, 5053 |
| Eco32I | GATATC | 1 cut(s) | 1028 |
| Eco47I | GGWCC | 7 cut(s) | 1124, 2243, 2630, 3289, 3350, 4114, 4655 |
| Eco47III | AGCGCT | 1 cut(s) | 901 |
| Eco53kI | GAGCTC | 1 cut(s) | 3919 |
| Eco57I | CTGAAG | 5 cut(s) | 282, 672, 3498, 3522, 4542 |
| Eco72I | CACGTG | 1 cut(s) | 76 |
| Eco81I | CCTNAGG | 1 cut(s) | 2247 |
| Eco88I | CYCGRG | 1 cut(s) | 17 |
| EcoICRI | GAGCTC | 1 cut(s) | 3919 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1124, 2243, 5047 |
| EcoRI | GAATTC | 2 cut(s) | 3563, 4910 |
| EcoRV | GATATC | 1 cut(s) | 1028 |
| EcoT14I | CCWWGG | 2 cut(s) | 3734, 4540 |
| EcoT22I | ATGCAT | 3 cut(s) | 1758, 2209, 3017 |
| EcoT38I | GRGCYC | 2 cut(s) | 3775, 3921 |
| ErhI | CCWWGG | 2 cut(s) | 3734, 4540 |
| Esp3I | CGTCTC | 2 cut(s) | 2651, 4155 |
| FaqI | GGGAC | 6 cut(s) | 1110, 2527, 3795, 4605, 4873, 4976 |
| FauI | CCCGC | 3 cut(s) | 1597, 2898, 3260 |
| FauNDI | CATATG | 1 cut(s) | 4840 |
| FbaI | TGATCA | 3 cut(s) | 2890, 5131, 5173 |
| FriOI | GRGCYC | 2 cut(s) | 3775, 3921 |
| FspBI | CTAG | 9 cut(s) | 500, 1389, 1749, 2229, 2378, 2484, 3354, 4811, 5223 |
| GlaI | GCGC | 1 cut(s) | 901 |
| GsaI | CCCAGC | 3 cut(s) | 315, 2097, 3274 |
| GsuI | CTGGAG | 3 cut(s) | 1446, 2208, 4551 |
| HaeII | RGCGCY | 1 cut(s) | 903 |
| HaeIII | GGCC | 8 cut(s) | 47, 1688, 1872, 2266, 3101, 4501, 5049, 5116 |
| HapII | CCGG | 3 cut(s) | 18, 3143, 3850 |
| HgaI | GACGC | 3 cut(s) | 238, 3006, 4079 |
| HhaI | GCGC | 1 cut(s) | 902 |
| Hin6I | GCGC | 1 cut(s) | 900 |
| HinP1I | GCGC | 1 cut(s) | 900 |
| HindIII | AAGCTT | 1 cut(s) | 4524 |
| HpaII | CCGG | 3 cut(s) | 18, 3143, 3850 |
| Hpy166II | GTNNAC | 8 cut(s) | 725, 739, 3481, 3588, 3796, 4029, 4114, 4655 |
| Hpy8I | GTNNAC | 8 cut(s) | 725, 739, 3481, 3588, 3796, 4029, 4114, 4655 |
| Hpy99I | CGWCG | 4 cut(s) | 232, 441, 3702, 4130 |
| HpyCH4IV | ACGT | 4 cut(s) | 26, 75, 715, 1504 |
| HpySE526I | ACGT | 4 cut(s) | 26, 75, 715, 1504 |
| HspAI | GCGC | 1 cut(s) | 900 |
| KflI | GGGWCCC | 1 cut(s) | 1124 |
| Ksp22I | TGATCA | 3 cut(s) | 2890, 5131, 5173 |
| KspI | CCGCGG | 1 cut(s) | 1958 |
| LmnI | GCTCC | 6 cut(s) | 1649, 1803, 3254, 3916, 4570, 5226 |
| MaeI | CTAG | 9 cut(s) | 500, 1389, 1749, 2229, 2378, 2484, 3354, 4811, 5223 |
| MaeII | ACGT | 4 cut(s) | 26, 75, 715, 1504 |
| MbiI | CCGCTC | 1 cut(s) | 2157 |
| MfeI | CAATTG | 1 cut(s) | 663 |
| MflI | RGATCY | 4 cut(s) | 1102, 1219, 1618, 4622 |
| MhlI | GDGCHC | 9 cut(s) | 147, 1185, 1819, 3590, 3734, 3775, 3786, 3808, 3921 |
| MlsI | TGGCCA | 1 cut(s) | 47 |
| MluNI | TGGCCA | 1 cut(s) | 47 |
| MlyI | GAGTC | 5 cut(s) | 1283, 1400, 2713, 3274, 4714 |
| MmeI | TCCRAC | 5 cut(s) | 460, 1463, 2657, 2857, 4032 |
| Mox20I | TGGCCA | 1 cut(s) | 47 |
| Mph1103I | ATGCAT | 3 cut(s) | 1758, 2209, 3017 |
| MroXI | GAANNNNTTC | 2 cut(s) | 3082, 3668 |
| MscI | TGGCCA | 1 cut(s) | 47 |
| MslI | CAYNNNNRTG | 5 cut(s) | 251, 823, 3711, 3760, 3801 |
| Msp20I | TGGCCA | 1 cut(s) | 47 |
| MspA1I | CMGCKG | 8 cut(s) | 60, 1424, 1957, 2977, 4048, 4064, 4178, 5257 |
| MspCI | CTTAAG | 2 cut(s) | 3167, 4495 |
| MspI | CCGG | 3 cut(s) | 18, 3143, 3850 |
| MunI | CAATTG | 1 cut(s) | 663 |
| Mva1269I | GAATGC | 5 cut(s) | 1758, 3514, 3538, 3892, 4487 |
| MvnI | CGCG | 3 cut(s) | 1957, 3361, 4073 |
| NciI | CCSGG | 2 cut(s) | 18, 19 |
| NcoI | CCATGG | 1 cut(s) | 4540 |
| NdeI | CATATG | 1 cut(s) | 4840 |
| NheI | GCTAGC | 1 cut(s) | 2228 |
| NsiI | ATGCAT | 3 cut(s) | 1758, 2209, 3017 |
| NspI | RCATGY | 4 cut(s) | 969, 1760, 1778, 4825 |
| NspV | TTCGAA | 1 cut(s) | 2725 |
| OliI | CACNNNNGTG | 1 cut(s) | 3801 |
| PaeI | GCATGC | 2 cut(s) | 1778, 4825 |
| PagI | TCATGA | 4 cut(s) | 85, 753, 2356, 3706 |
| PasI | CCCWGGG | 2 cut(s) | 147, 3285 |
| PceI | AGGCCT | 1 cut(s) | 2266 |
| PciI | ACATGT | 1 cut(s) | 965 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 550, 1182, 4125 |
| PctI | GAATGC | 5 cut(s) | 1758, 3514, 3538, 3892, 4487 |
| PdmI | GAANNNNTTC | 2 cut(s) | 3082, 3668 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 3347, 3431, 4048 |
| PfoI | TCCNGGA | 1 cut(s) | 1726 |
| PleI | GAGTC | 5 cut(s) | 1283, 1400, 2713, 3274, 4714 |
| PmaCI | CACGTG | 1 cut(s) | 76 |
| PmlI | CACGTG | 1 cut(s) | 76 |
| PpsI | GAGTC | 5 cut(s) | 1283, 1400, 2713, 3274, 4714 |
| Ppu21I | YACGTR | 3 cut(s) | 27, 76, 716 |
| PpuMI | RGGWCCY | 2 cut(s) | 1124, 2243 |
| PscI | ACATGT | 1 cut(s) | 965 |
| PsiI | TTATAA | 1 cut(s) | 4878 |
| Psp124BI | GAGCTC | 1 cut(s) | 3921 |
| Psp5II | RGGWCCY | 2 cut(s) | 1124, 2243 |
| PspCI | CACGTG | 1 cut(s) | 76 |
| PspFI | CCCAGC | 3 cut(s) | 311, 2093, 3270 |
| PspPPI | RGGWCCY | 2 cut(s) | 1124, 2243 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 5230, 5262 |
| PstI | CTGCAG | 5 cut(s) | 296, 2242, 2941, 3165, 5017 |
| PstNI | CAGNNNCTG | 7 cut(s) | 2246, 2549, 2945, 3431, 3830, 4048, 4862 |
| PsuI | RGATCY | 4 cut(s) | 1102, 1219, 1618, 4622 |
| PvuII | CAGCTG | 5 cut(s) | 60, 1424, 2977, 4048, 5257 |
| RsaI | GTAC | 8 cut(s) | 669, 874, 1132, 1159, 1420, 1609, 1708, 3795 |
| RsaNI | GTAC | 8 cut(s) | 668, 873, 1131, 1158, 1419, 1608, 1707, 3794 |
| RseI | CAYNNNNRTG | 5 cut(s) | 251, 823, 3711, 3760, 3801 |
| SacI | GAGCTC | 1 cut(s) | 3921 |
| SacII | CCGCGG | 1 cut(s) | 1958 |
| SbfI | CCTGCAGG | 1 cut(s) | 2242 |
| ScaI | AGTACT | 1 cut(s) | 874 |
| SchI | GAGTC | 5 cut(s) | 1283, 1400, 2713, 3274, 4714 |
| SdaI | CCTGCAGG | 1 cut(s) | 2242 |
| SduI | GDGCHC | 9 cut(s) | 147, 1185, 1819, 3590, 3734, 3775, 3786, 3808, 3921 |
| SfcI | CTRYAG | 9 cut(s) | 292, 1614, 1779, 2137, 2238, 2502, 2937, 3161, 5013 |
| Sfr303I | CCGCGG | 1 cut(s) | 1958 |
| SfuI | TTCGAA | 1 cut(s) | 2725 |
| SgrBI | CCGCGG | 1 cut(s) | 1958 |
| SinI | GGWCC | 7 cut(s) | 1124, 2243, 2630, 3289, 3350, 4114, 4655 |
| SmaI | CCCGGG | 1 cut(s) | 19 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 251, 823, 3711, 3760, 3801 |
| SmlI | CTYRAG | 6 cut(s) | 1769, 2597, 2957, 3167, 4495, 4755 |
| SmoI | CTYRAG | 6 cut(s) | 1769, 2597, 2957, 3167, 4495, 4755 |
| SphI | GCATGC | 2 cut(s) | 1778, 4825 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 2242 |
| SseBI | AGGCCT | 1 cut(s) | 2266 |
| SspI | AATATT | 2 cut(s) | 4414, 5074 |
| SspMI | CTAG | 9 cut(s) | 500, 1389, 1749, 2229, 2378, 2484, 3354, 4811, 5223 |
| SstI | GAGCTC | 1 cut(s) | 3921 |
| StuI | AGGCCT | 1 cut(s) | 2266 |
| StyI | CCWWGG | 2 cut(s) | 3734, 4540 |
| TaiI | ACGT | 4 cut(s) | 29, 78, 718, 1507 |
| TaqI | TCGA | 8 cut(s) | 168, 544, 553, 2725, 3064, 3700, 4260, 4603 |
| TatI | WGTACW | 4 cut(s) | 667, 872, 1130, 1706 |
| TauI | GCSGC | 4 cut(s) | 2157, 4037, 4076, 4187 |
| TspGWI | ACGGA | 6 cut(s) | 378, 1711, 1790, 2675, 4281, 4623 |
| TspMI | CCCGGG | 1 cut(s) | 17 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 3347, 3431, 4048 |
| Vha464I | CTTAAG | 2 cut(s) | 3167, 4495 |
| VneI | GTGCAC | 1 cut(s) | 3586 |
| VpaK11BI | GGWCC | 7 cut(s) | 1124, 2243, 2630, 3289, 3350, 4114, 4655 |
| XapI | RAATTY | 8 cut(s) | 317, 972, 3028, 3563, 3665, 4910, 5108, 5126 |
| XbaI | TCTAGA | 2 cut(s) | 1748, 4810 |
| XceI | RCATGY | 4 cut(s) | 969, 1760, 1778, 4825 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1094 |
| XmaI | CCCGGG | 1 cut(s) | 17 |
| XmnI | GAANNNNTTC | 2 cut(s) | 3082, 3668 |
| XspI | CTAG | 9 cut(s) | 500, 1389, 1749, 2229, 2378, 2484, 3354, 4811, 5223 |
| ZrmI | AGTACT | 1 cut(s) | 874 |
| Zsp2I | ATGCAT | 3 cut(s) | 1758, 2209, 3017 |