Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0011148

Physical Location & Seq

Genomic Coordinates Forward (+)

7347337 .. 7350138

Gene Structure 2802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g13000.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGAAGGGAGCGAGAGCGAGGCGGTGTATGATTCGGTGGGCCTGAACCCGCAGCTGTTCATCAACGAGGTCATCAACACCGTCGACGATTTGGTCGACGATGCCTTCAATTACTTCCATGAGGAAGCATCGACCGGTTTGAAAGTGCAAGGCACTGACAGAGCTCAAGATCTAGCCAAGGGTGTTAATGTGATTCGGAAAATGGTTCAATCGAATGTTGATAAGCGGCTGCTTATGTGGGAGCAGTACTGTCTTGACCACTGTTTTGAAGTTCCTGAGGGGTTTGTGTTGCCCAAAAGTGATGAATCACCTGTGGATAGTTCAGCATTTCAAAGTGCAGTCCGCGATCCAGAAGTGGATGCCCAGTTGGATTCGTTGAGGAACAAACTCTCCAAGGTTGGTGAGGAGTCTGCTGCACTGAACCGAGAGCTCCAAATATTGGAACAACAGTCTGCTTCTAGTGACCGTTTATCTGCTCTTGTTAATGAGACATTGCAGTTATATGACCAAAACTCTTTTCATGAGATGTTCCAGGAGATGGTTAAAACATCATCAGAACTTAAGATGAAAACTGCAAAGCTGATGACCAGAAGGGCTGAAAAAGTGAAGCAGAATAAGATAGATAGGATCTACAATCGATACAAAGATTCATCTGTGATGAATGACAGCAAAGGCTTCTCTGGTTCAAGGTTGGAAGATCTTCAAGAATTCTTACACAATATGAAAACAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000444 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000818 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0008104 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034501 GO:0034502 GO:0034508 GO:0034613 GO:0034622 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0048285 GO:0051179 GO:0051276 GO:0051382 GO:0051383 GO:0051641 GO:0065003 GO:0065004 GO:0070013 GO:0070727 GO:0070925 GO:0071459 GO:0071824 GO:0071840 GO:0098687 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mis12

Protein Analysis

245

Amino Acids

27.79

Weight (kDa)

4.84

Isoelectric Point (pI)

50.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mis12	PF05859	11 - 209	4.3e-37	Mis12 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35520
fragaria_vesca	FvH4_5g13000
malus_domestica	MD06G1208100.v1.1 MD14G1218500.v1.1
prunus_persica	Prupe.5G212600_v2.0.a1 Prupe.5G212600_v2.0.a1
pyrus_communis	pycom06g18590 pycom14g18110
rosa_chinensis	RchiOBHm_Chr7g0184161
rosa_laevigata	RLG00000004998
rosa_multiflora	Rmu_co8235265.1_g000001 Rmu_sc0012221.1_g000004
rosa_roxburghii	Rroxscaffold_3G00269840
rosa_rugosa	Rorug06G0463400 Rorug06G0463500
rosa_samantha	Rh7AG082400 Rh7BG064800 Rh7CG065200 Rh7DG064900
rosa_wichuraiana	Rw7G005310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
AccB7I	CCANNNNNTGG	2 cut(s)	439, 538
AccI	GTMKAC	2 cut(s)	84, 96
AccII	CGCG	1 cut(s)	345
AciI	CCGC	4 cut(s)	23, 50, 226, 343
AclWI	GGATC	2 cut(s)	341, 635
AcsI	RAATTY	1 cut(s)	707
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	2 cut(s)	439, 538
AflII	CTTAAG	1 cut(s)	560
AgeI	ACCGGT	1 cut(s)	134
AgsI	TTSAA	7 cut(s)	109, 142, 209, 269, 332, 687, 704
AjnI	CCWGG	1 cut(s)	531
AjuI	GAANNNNNNNTTGG	2 cut(s)	501, 533
AloI	GAACNNNNNNTCC	2 cut(s)	374, 406
AluBI	AGCT	4 cut(s)	55, 164, 430, 580
AluI	AGCT	4 cut(s)	55, 164, 430, 580
Alw21I	GWGCWC	2 cut(s)	166, 432
Alw26I	GTCTC	1 cut(s)	482
AlwI	GGATC	2 cut(s)	341, 635
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	3 cut(s)	52, 229, 413
ApoI	RAATTY	1 cut(s)	707
ArsI	GACNNNNNNTTYG	2 cut(s)	248, 280
AsiGI	ACCGGT	1 cut(s)	134
Asp700I	GAANNNNTTC	1 cut(s)	699
AspS9I	GGNCC	1 cut(s)	40
AsuHPI	GGTGA	2 cut(s)	300, 413
AxyI	CCTNAGG	1 cut(s)	276
BanII	GRGCYC	2 cut(s)	166, 432
Bbv12I	GWGCWC	2 cut(s)	166, 432
BbvI	GCAGC	3 cut(s)	64, 216, 400
BccI	CCATC	1 cut(s)	532
BciT130I	CCWGG	1 cut(s)	533
BcoDI	GTCTC	1 cut(s)	482
BfaI	CTAG	2 cut(s)	173, 459
BfrI	CTTAAG	1 cut(s)	560
BglII	AGATCT	2 cut(s)	169, 697
BisI	GCNGC	4 cut(s)	53, 227, 230, 414
BlsI	GCNGC	4 cut(s)	54, 228, 231, 415
BmcAI	AGTACT	1 cut(s)	248
Bme1390I	CCNGG	1 cut(s)	533
BmgT120I	GGNCC	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	533
BmrI	ACTGGG	1 cut(s)	358
BmsI	GCATC	3 cut(s)	91, 137, 349
BmuI	ACTGGG	1 cut(s)	358
BpuEI	CTTGAG	1 cut(s)	150
Bsa29I	ATCGAT	1 cut(s)	637
BsaJI	CCNNGG	2 cut(s)	177, 393
BsaWI	WCCGGW	1 cut(s)	134
BsaXI	ACNNNNNCTCC	2 cut(s)	374, 404
Bsc4I	CCNNNNNNNGG	2 cut(s)	439, 538
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	1 cut(s)	364
Bse21I	CCTNAGG	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	491
BseBI	CCWGG	1 cut(s)	533
BseCI	ATCGAT	1 cut(s)	637
BseDI	CCNNGG	2 cut(s)	177, 393
BseGI	GGATG	1 cut(s)	364
BseLI	CCNNNNNNNGG	2 cut(s)	439, 538
BseMI	GCAATG	1 cut(s)	491
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	364
BseRI	GAGGAG	1 cut(s)	419
BseXI	GCAGC	3 cut(s)	64, 216, 400
BsgI	GTGCAG	2 cut(s)	357, 399
Bsh1236I	CGCG	1 cut(s)	345
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	1 cut(s)	42
BshTI	ACCGGT	1 cut(s)	134
BshVI	ATCGAT	1 cut(s)	637
BsiEI	CGRYCG	1 cut(s)	135
BsiHKAI	GWGCWC	2 cut(s)	166, 432
BsiSI	CCGG	1 cut(s)	135
BslI	CCNNNNNNNGG	2 cut(s)	439, 538
BsmAI	GTCTC	1 cut(s)	482
BsnI	GGCC	1 cut(s)	42
Bsp1286I	GDGCHC	2 cut(s)	166, 432
Bsp143I	GATC	4 cut(s)	169, 346, 627, 697
BspACI	CCGC	4 cut(s)	23, 50, 226, 343
BspANI	GGCC	1 cut(s)	42
BspCNI	CTCAG	1 cut(s)	268
BspDI	ATCGAT	1 cut(s)	637
BspFNI	CGCG	1 cut(s)	345
BspHI	TCATGA	1 cut(s)	520
BspPI	GGATC	2 cut(s)	341, 635
BspTI	CTTAAG	1 cut(s)	560
BsrDI	GCAATG	1 cut(s)	491
BsrFI	RCCGGY	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	364
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	177, 393
BssMI	GATC	4 cut(s)	169, 346, 627, 697
BssT1I	CCWWGG	2 cut(s)	177, 393
Bst2UI	CCWGG	1 cut(s)	533
Bst4CI	ACNGT	5 cut(s)	82, 251, 263, 450, 467
BstAFI	CTTAAG	1 cut(s)	560
BstDEI	CTNAG	1 cut(s)	276
BstF5I	GGATG	1 cut(s)	364
BstFNI	CGCG	1 cut(s)	345
BstKTI	GATC	4 cut(s)	172, 349, 630, 700
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	4 cut(s)	169, 346, 627, 697
BstMCI	CGRYCG	1 cut(s)	135
BstNI	CCWGG	1 cut(s)	533
BstSCI	CCNGG	1 cut(s)	531
BstUI	CGCG	1 cut(s)	345
BstV1I	GCAGC	3 cut(s)	64, 216, 400
BstX2I	RGATCY	3 cut(s)	169, 627, 697
BstYI	RGATCY	3 cut(s)	169, 627, 697
Bsu15I	ATCGAT	1 cut(s)	637
Bsu36I	CCTNAGG	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	42
BsuTUI	ATCGAT	1 cut(s)	637
BtsCI	GGATG	1 cut(s)	364
BtsIMutI	CAGTG	3 cut(s)	153, 259, 416
CciI	TCATGA	1 cut(s)	520
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	40
ClaI	ATCGAT	1 cut(s)	637
Csp6I	GTAC	1 cut(s)	247
CspAI	ACCGGT	1 cut(s)	134
CviAII	CATG	2 cut(s)	119, 521
CviJI	RGCY	9 cut(s)	42, 55, 164, 176, 229, 430, 580, 596, 675
CviKI_1	RGCY	9 cut(s)	42, 55, 164, 176, 229, 430, 580, 596, 675
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	1 cut(s)	276
DpnI	GATC	4 cut(s)	171, 348, 629, 699
DpnII	GATC	4 cut(s)	169, 346, 627, 697
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
Ecl136II	GAGCTC	2 cut(s)	164, 430
Eco130I	CCWWGG	2 cut(s)	177, 393
Eco24I	GRGCYC	2 cut(s)	166, 432
Eco53kI	GAGCTC	2 cut(s)	164, 430
Eco81I	CCTNAGG	1 cut(s)	276
EcoICRI	GAGCTC	2 cut(s)	164, 430
EcoRI	GAATTC	1 cut(s)	707
EcoRII	CCWGG	1 cut(s)	531
EcoT14I	CCWWGG	2 cut(s)	177, 393
EcoT38I	GRGCYC	2 cut(s)	166, 432
ErhI	CCWWGG	2 cut(s)	177, 393
FaeI	CATG	2 cut(s)	122, 524
FaiI	YATR	7 cut(s)	30, 120, 236, 502, 504, 522, 722
FatI	CATG	2 cut(s)	118, 520
FauI	CCCGC	1 cut(s)	57
FblI	GTMKAC	2 cut(s)	84, 96
Fnu4HI	GCNGC	4 cut(s)	53, 227, 230, 414
FokI	GGATG	1 cut(s)	371
FriOI	GRGCYC	2 cut(s)	166, 432
Fsp4HI	GCNGC	4 cut(s)	53, 227, 230, 414
FspBI	CTAG	2 cut(s)	173, 459
GluI	GCNGC	4 cut(s)	53, 227, 230, 414
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	1 cut(s)	135
Hin1II	CATG	2 cut(s)	122, 524
HincII	GTYRAC	2 cut(s)	85, 97
HindII	GTYRAC	2 cut(s)	85, 97
HinfI	GANTC	6 cut(s)	32, 193, 305, 371, 407, 647
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	2 cut(s)	300, 413
Hpy166II	GTNNAC	2 cut(s)	85, 97
Hpy188I	TCNGA	2 cut(s)	198, 556
Hpy188III	TCNNGA	6 cut(s)	167, 254, 275, 350, 521, 704
Hpy8I	GTNNAC	2 cut(s)	85, 97
Hpy99I	CGWCG	3 cut(s)	86, 89, 101
HpyAV	CCTTC	2 cut(s)	115, 585
HpyCH4III	ACNGT	5 cut(s)	82, 251, 263, 450, 467
HpyCH4V	TGCA	5 cut(s)	148, 338, 416, 496, 575
HpyF3I	CTNAG	1 cut(s)	276
Hsp92II	CATG	2 cut(s)	122, 524
Kzo9I	GATC	4 cut(s)	169, 346, 627, 697
LmnI	GCTCC	3 cut(s)	9, 241, 435
Lsp1109I	GCAGC	3 cut(s)	64, 216, 400
LweI	GCATC	3 cut(s)	91, 137, 349
MaeI	CTAG	2 cut(s)	173, 459
MaeIII	GTNAC	1 cut(s)	461
MalI	GATC	4 cut(s)	171, 348, 629, 699
MboI	GATC	4 cut(s)	169, 346, 627, 697
MboII	GAAGA	2 cut(s)	692, 707
MflI	RGATCY	3 cut(s)	169, 627, 697
MhlI	GDGCHC	2 cut(s)	166, 432
MluCI	AATT	2 cut(s)	109, 707
MlyI	GAGTC	1 cut(s)	416
MmeI	TCCRAC	2 cut(s)	348, 672
MnlI	CCTC	6 cut(s)	13, 61, 115, 271, 372, 397
MroXI	GAANNNNTTC	1 cut(s)	699
MseI	TTAA	4 cut(s)	186, 483, 543, 561
MspA1I	CMGCKG	1 cut(s)	55
MspCI	CTTAAG	1 cut(s)	560
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	533
MvaI	CCWGG	1 cut(s)	533
MvnI	CGCG	1 cut(s)	345
NdeII	GATC	4 cut(s)	169, 346, 627, 697
NlaIII	CATG	2 cut(s)	122, 524
NmuCI	GTSAC	1 cut(s)	461
PagI	TCATGA	1 cut(s)	520
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PdmI	GAANNNNTTC	1 cut(s)	699
PfeI	GAWTC	5 cut(s)	32, 193, 305, 371, 647
PflMI	CCANNNNNTGG	2 cut(s)	439, 538
PfoI	TCCNGGA	1 cut(s)	531
PinAI	ACCGGT	1 cut(s)	134
PkrI	GCNGC	4 cut(s)	54, 228, 231, 415
PleI	GAGTC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	415
Psp124BI	GAGCTC	2 cut(s)	166, 432
Psp6I	CCWGG	1 cut(s)	531
PspGI	CCWGG	1 cut(s)	531
PspPI	GGNCC	1 cut(s)	40
PsuI	RGATCY	3 cut(s)	169, 627, 697
PvuII	CAGCTG	1 cut(s)	55
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SacI	GAGCTC	2 cut(s)	166, 432
SalI	GTCGAC	2 cut(s)	83, 95
SaqAI	TTAA	4 cut(s)	186, 483, 543, 561
SatI	GCNGC	4 cut(s)	53, 227, 230, 414
Sau3AI	GATC	4 cut(s)	169, 346, 627, 697
Sau96I	GGNCC	1 cut(s)	40
ScaI	AGTACT	1 cut(s)	248
SchI	GAGTC	1 cut(s)	416
ScrFI	CCNGG	1 cut(s)	533
SduI	GDGCHC	2 cut(s)	166, 432
SetI	ASST	8 cut(s)	57, 72, 166, 313, 399, 432, 582, 692
SfaNI	GCATC	3 cut(s)	91, 137, 349
SgrDI	CGTCGACG	1 cut(s)	83
SmlI	CTYRAG	2 cut(s)	165, 560
SmoI	CTYRAG	2 cut(s)	165, 560
Sse9I	AATT	2 cut(s)	109, 707
SsiI	CCGC	4 cut(s)	23, 50, 226, 343
SspI	AATATT	1 cut(s)	438
SspMI	CTAG	2 cut(s)	173, 459
SstI	GAGCTC	2 cut(s)	166, 432
StyD4I	CCNGG	1 cut(s)	531
StyI	CCWWGG	2 cut(s)	177, 393
TaaI	ACNGT	5 cut(s)	82, 251, 263, 450, 467
TaqI	TCGA	5 cut(s)	84, 96, 131, 212, 637
TasI	AATT	2 cut(s)	109, 707
TatI	WGTACW	1 cut(s)	246
TauI	GCSGC	1 cut(s)	229
TfiI	GAWTC	5 cut(s)	32, 193, 305, 371, 647
Tru1I	TTAA	4 cut(s)	186, 483, 543, 561
Tru9I	TTAA	4 cut(s)	186, 483, 543, 561
TscAI	CASTG	3 cut(s)	160, 266, 423
TseFI	GTSAC	1 cut(s)	461
TseI	GCWGC	3 cut(s)	52, 229, 413
Tsp45I	GTSAC	1 cut(s)	461
TspDTI	ATGAA	6 cut(s)	49, 318, 509, 581, 639, 674
TspRI	CASTG	3 cut(s)	160, 266, 423
Van91I	CCANNNNNTGG	2 cut(s)	439, 538
Vha464I	CTTAAG	1 cut(s)	560
XapI	RAATTY	1 cut(s)	707
XmiI	GTMKAC	2 cut(s)	84, 96
XmnI	GAANNNNTTC	1 cut(s)	699
XspI	CTAG	2 cut(s)	173, 459
ZrmI	AGTACT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.