Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0011148

Physical Location & Seq

Genomic Coordinates Reverse (-)

16829143 .. 16831641

Gene Structure 2499 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G212600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGAAGGCAGTGAAAGCGAGGCAGTGTTCGATTCGCTGAACGTTAATCCGCAGCTGTTTATCAACGAGGTCTTCAACCTCGTCGATGATTTGGTCGATGACGCTTGCAATCATTTCCACCAACAAGCATCAACCTCCCTGAAGATCGAGGGCACTGACAGAACCCAAGATTTATCCAAGGGTATTAATGTTATCCGCAAAAAGGTTCAATCAGATATTGATAAGCGGCTAGCTATGTGGGAGCAGCACTGCCATAACCACTTTTTTCAAGTTCCTGAGGGGTTCATGCTGCCCAAAAGTGATGAATCACCTGTCGAAACTTCTATATGTCAAAATGCAATCTGTGACCCAGACTTGGATGCCCAGTTGGATTTATTAAGGAACAACCTTACTAAGGTTGGTCAGGAGTCTGCTGCGCTGAACCGAGAGCTCCAATCATTAGAACGACAGTCTGCGTCTAACGATCATATTTCTGCCCTCGATGAGATTTCACTACTATATGACCAAAACTCTTATCATGAGATGTTCCAAGAGATGATGAAGACAGCATCAGAACTTCGGACAAAAATAGGAAAGCTGAAGACCAGAAAGATAGAAGAAACCGAACACAATAAAGCAGATAAGATTTACAACCCACACAGAGATCCATCTATGATGGGTATTGGCAAAGGCTTCTCTGGTGCGAAGTTGGAAGATCTTCAAGAAGTTTTAGTCCATTTGAAAAACAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000444 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000818 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0008104 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034501 GO:0034502 GO:0034508 GO:0034613 GO:0034622 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0048285 GO:0051179 GO:0051276 GO:0051382 GO:0051383 GO:0051641 GO:0065003 GO:0065004 GO:0070013 GO:0070727 GO:0070925 GO:0071459 GO:0071824 GO:0071840 GO:0098687 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mis12

Protein Analysis

244

Amino Acids

27.67

Weight (kDa)

5.13

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35520
fragaria_vesca	FvH4_5g13000
malus_domestica	MD06G1208100.v1.1 MD14G1218500.v1.1
prunus_persica	Prupe.5G212600_v2.0.a1 Prupe.5G212600_v2.0.a1
pyrus_communis	pycom06g18590 pycom14g18110
rosa_chinensis	RchiOBHm_Chr7g0184161
rosa_laevigata	RLG00000004998
rosa_multiflora	Rmu_co8235265.1_g000001 Rmu_sc0012221.1_g000004
rosa_roxburghii	Rroxscaffold_3G00269840
rosa_rugosa	Rorug06G0463400 Rorug06G0463500
rosa_samantha	Rh7AG082400 Rh7BG064800 Rh7CG065200 Rh7DG064900
rosa_wichuraiana	Rw7G005310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	50, 196, 226
AclI	AACGTT	1 cut(s)	42
AclWI	GGATC	1 cut(s)	638
AcuI	CTGAAG	2 cut(s)	161, 599
AfiI	CCNNNNNNNGG	3 cut(s)	202, 355, 394
AgsI	TTSAA	5 cut(s)	76, 209, 269, 701, 721
AluBI	AGCT	4 cut(s)	55, 233, 430, 577
AluI	AGCT	4 cut(s)	55, 233, 430, 577
Alw21I	GWGCWC	1 cut(s)	432
AlwI	GGATC	1 cut(s)	638
ApeKI	GCWGC	4 cut(s)	52, 244, 289, 413
AseI	ATTAAT	1 cut(s)	186
Asp700I	GAANNNNTTC	1 cut(s)	696
AspLEI	GCGC	1 cut(s)	418
AsuHPI	GGTGA	1 cut(s)	300
AsuNHI	GCTAGC	1 cut(s)	229
AxyI	CCTNAGG	1 cut(s)	276
BaeGI	GKGCMC	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	432
BbsI	GAAGAC	3 cut(s)	64, 548, 587
Bbv12I	GWGCWC	1 cut(s)	432
BbvI	GCAGC	4 cut(s)	64, 256, 276, 400
BccI	CCATC	2 cut(s)	649, 655
BfaI	CTAG	1 cut(s)	230
BglII	AGATCT	1 cut(s)	694
BisI	GCNGC	5 cut(s)	53, 227, 245, 290, 414
BlsI	GCNGC	5 cut(s)	54, 228, 246, 291, 415
BmrI	ACTGGG	1 cut(s)	358
BmsI	GCATC	3 cut(s)	137, 349, 557
BmtI	GCTAGC	1 cut(s)	233
BmuI	ACTGGG	1 cut(s)	358
BpiI	GAAGAC	3 cut(s)	64, 548, 587
BsaJI	CCNNGG	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 355, 394
Bse1I	ACTGG	1 cut(s)	364
Bse21I	CCTNAGG	1 cut(s)	276
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	1 cut(s)	364
BseLI	CCNNNNNNNGG	3 cut(s)	202, 355, 394
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	364
BseSI	GKGCMC	1 cut(s)	155
BseXI	GCAGC	4 cut(s)	64, 256, 276, 400
BsiHKAI	GWGCWC	1 cut(s)	432
BslI	CCNNNNNNNGG	3 cut(s)	202, 355, 394
Bsp1286I	GDGCHC	2 cut(s)	155, 432
Bsp143I	GATC	4 cut(s)	144, 463, 643, 694
BspACI	CCGC	3 cut(s)	50, 196, 226
BspCNI	CTCAG	1 cut(s)	268
BspHI	TCATGA	1 cut(s)	517
BspOI	GCTAGC	1 cut(s)	233
BspPI	GGATC	1 cut(s)	638
BsrI	ACTGG	1 cut(s)	364
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	4 cut(s)	144, 463, 643, 694
BssT1I	CCWWGG	1 cut(s)	177
Bst4CI	ACNGT	1 cut(s)	450
BstC8I	GCNNGC	2 cut(s)	106, 231
BstDEI	CTNAG	2 cut(s)	276, 393
BstENI	CCTNNNNNAGG	1 cut(s)	392
BstF5I	GGATG	1 cut(s)	364
BstHHI	GCGC	1 cut(s)	418
BstKTI	GATC	4 cut(s)	147, 466, 646, 697
BstMBI	GATC	4 cut(s)	144, 463, 643, 694
BstMWI	GCNNNNNNNGC	1 cut(s)	15
BstSLI	GKGCMC	1 cut(s)	155
BstV1I	GCAGC	4 cut(s)	64, 256, 276, 400
BstV2I	GAAGAC	3 cut(s)	64, 548, 587
BstX2I	RGATCY	2 cut(s)	643, 694
BstYI	RGATCY	2 cut(s)	643, 694
Bsu36I	CCTNAGG	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	364
BtsI	GCAGTG	3 cut(s)	16, 30, 247
BtsIMutI	CAGTG	4 cut(s)	16, 30, 153, 247
Cac8I	GCNNGC	2 cut(s)	106, 231
CciI	TCATGA	1 cut(s)	517
CfoI	GCGC	1 cut(s)	418
CseI	GACGC	2 cut(s)	110, 444
CviAII	CATG	2 cut(s)	286, 518
CviJI	RGCY	6 cut(s)	55, 229, 233, 430, 577, 672
CviKI_1	RGCY	6 cut(s)	55, 229, 233, 430, 577, 672
DdeI	CTNAG	2 cut(s)	276, 393
DpnI	GATC	4 cut(s)	146, 465, 645, 696
DpnII	GATC	4 cut(s)	144, 463, 643, 694
Ecl136II	GAGCTC	1 cut(s)	430
Eco130I	CCWWGG	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	432
Eco53kI	GAGCTC	1 cut(s)	430
Eco57I	CTGAAG	2 cut(s)	161, 599
Eco81I	CCTNAGG	1 cut(s)	276
EcoICRI	GAGCTC	1 cut(s)	430
EcoNI	CCTNNNNNAGG	1 cut(s)	392
EcoT14I	CCWWGG	1 cut(s)	177
EcoT38I	GRGCYC	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	2 cut(s)	289, 521
FatI	CATG	2 cut(s)	285, 517
Fnu4HI	GCNGC	5 cut(s)	53, 227, 245, 290, 414
FokI	GGATG	1 cut(s)	371
FriOI	GRGCYC	1 cut(s)	432
Fsp4HI	GCNGC	5 cut(s)	53, 227, 245, 290, 414
FspBI	CTAG	1 cut(s)	230
GlaI	GCGC	1 cut(s)	417
GluI	GCNGC	5 cut(s)	53, 227, 245, 290, 414
HgaI	GACGC	2 cut(s)	110, 444
HhaI	GCGC	1 cut(s)	418
Hin1II	CATG	2 cut(s)	289, 521
Hin6I	GCGC	1 cut(s)	416
HinP1I	GCGC	1 cut(s)	416
HinfI	GANTC	3 cut(s)	32, 305, 407
HphI	GGTGA	1 cut(s)	300
Hpy188I	TCNGA	3 cut(s)	214, 553, 561
Hpy188III	TCNNGA	4 cut(s)	275, 404, 518, 701
Hpy99I	CGWCG	1 cut(s)	86
HpyCH4III	ACNGT	1 cut(s)	450
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	2 cut(s)	108, 338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	15
HpyF3I	CTNAG	2 cut(s)	276, 393
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	2 cut(s)	289, 521
HspAI	GCGC	1 cut(s)	416
Kzo9I	GATC	4 cut(s)	144, 463, 643, 694
LmnI	GCTCC	2 cut(s)	241, 435
LpnPI	CCDG	9 cut(s)	152, 288, 324, 363, 377, 389, 598, 663, 712
Lsp1109I	GCAGC	4 cut(s)	64, 256, 276, 400
LweI	GCATC	3 cut(s)	137, 349, 557
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	4 cut(s)	146, 465, 645, 696
MboI	GATC	4 cut(s)	144, 463, 643, 694
MboII	GAAGA	7 cut(s)	64, 154, 553, 592, 608, 689, 704
MflI	RGATCY	2 cut(s)	643, 694
MhlI	GDGCHC	2 cut(s)	155, 432
MlyI	GAGTC	1 cut(s)	416
MmeI	TCCRAC	2 cut(s)	348, 669
MnlI	CCTC	7 cut(s)	13, 61, 89, 142, 145, 271, 488
MroXI	GAANNNNTTC	1 cut(s)	696
MseI	TTAA	3 cut(s)	45, 186, 377
MspA1I	CMGCKG	1 cut(s)	55
MwoI	GCNNNNNNNGC	1 cut(s)	15
NdeII	GATC	4 cut(s)	144, 463, 643, 694
NheI	GCTAGC	1 cut(s)	229
NlaIII	CATG	2 cut(s)	289, 521
NmuCI	GTSAC	1 cut(s)	344
PagI	TCATGA	1 cut(s)	517
PdmI	GAANNNNTTC	1 cut(s)	696
PfeI	GAWTC	2 cut(s)	32, 305
PkrI	GCNGC	5 cut(s)	54, 228, 246, 291, 415
PleI	GAGTC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	415
PshBI	ATTAAT	1 cut(s)	186
Psp124BI	GAGCTC	1 cut(s)	432
Psp1406I	AACGTT	1 cut(s)	42
PsuI	RGATCY	2 cut(s)	643, 694
PvuII	CAGCTG	1 cut(s)	55
SacI	GAGCTC	1 cut(s)	432
SaqAI	TTAA	3 cut(s)	45, 186, 377
SatI	GCNGC	5 cut(s)	53, 227, 245, 290, 414
Sau3AI	GATC	4 cut(s)	144, 463, 643, 694
SchI	GAGTC	1 cut(s)	416
SduI	GDGCHC	2 cut(s)	155, 432
SfaNI	GCATC	3 cut(s)	137, 349, 557
SsiI	CCGC	3 cut(s)	50, 196, 226
SspMI	CTAG	1 cut(s)	230
SstI	GAGCTC	1 cut(s)	432
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	1 cut(s)	450
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	6 cut(s)	30, 84, 96, 147, 315, 480
TauI	GCSGC	1 cut(s)	229
TfiI	GAWTC	2 cut(s)	32, 305
Tru1I	TTAA	3 cut(s)	45, 186, 377
Tru9I	TTAA	3 cut(s)	45, 186, 377
TscAI	CASTG	4 cut(s)	16, 30, 160, 254
TseFI	GTSAC	1 cut(s)	344
TseI	GCWGC	4 cut(s)	52, 244, 289, 413
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	3 cut(s)	274, 318, 554
TspRI	CASTG	4 cut(s)	16, 30, 160, 254
VspI	ATTAAT	1 cut(s)	186
XagI	CCTNNNNNAGG	1 cut(s)	392
XmnI	GAANNNNTTC	1 cut(s)	696
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.