Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0011148

Physical Location & Seq

Genomic Coordinates Forward (+)

62573406 .. 62576031

Gene Structure 2626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00269840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGAAGGGAGAGAAAGCGAGGCGGTGTTTGAGTCTGTGAACCTGAATCCGCAGCTGTTCATCAACGAGGTCATCAACACCGTCGGCGATTTGGTCGACGATGCGTTCGATTACTTCCAGCAGGAAGCATCGACCTGTTTGAAAGTCGACGGCACTGACAGAGCTCAAGATCTAGCCAAGGGCGTTAATCTCATTCACAAAATGGTTCAATCAAATGTTGATAAGCGGCTGGTTATGTGGGAGCGTTACTGTCTTGACCACTGTTTTGAAGTTCCTGAGGGGTTTGTGCTGCCCAAAAGTGTAGGTCCTTTTCAGTTAATTGATGTTTCCTGTTCCGCTTTTAATTCAGTTCTGGAGTCTGGGCAGTGTAAAGGTGAAACACCTGTTGATAGTTCTGTATGTCAAAATGCAATCTGTGATCCAGAAGTGGATGCCCAGTTGGATTCGTTGAGGAACAAACTCACCAAGGTTGGTGAGGAATCTGCTGCACTGAACCGAGAGCTCCAATTATTGGAACAACAGTCTGCTTCTAGTGACCGTTTATCTGCGCTTGTCAATGAGACATTGCAGTTATATGACCGAAACTCTTTTCATGAGATGTTCCAGGAGATGGTTAAAACATCATCACAACTTAGGATGAAAACAGCAAAGCTGAAGACCAGAAAGGCTGAAGGAGCGAAACAGAATAAGACAGCTAAGATCTACAACCGATACAAAGATTCATCTGTGATGAATGATAGCAATGGCTTCTCTGGTGCAAAGTTGGAAGATCTTCAAGAATTTTTAGACAATATGAAAACAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000444 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000818 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0008104 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034501 GO:0034502 GO:0034508 GO:0034613 GO:0034622 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0048285 GO:0051179 GO:0051276 GO:0051382 GO:0051383 GO:0051641 GO:0065003 GO:0065004 GO:0070013 GO:0070727 GO:0070925 GO:0071459 GO:0071824 GO:0071840 GO:0098687 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mis12

Protein Analysis

268

Amino Acids

30.11

Weight (kDa)

4.84

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mis12	PF05859	8 - 100	6.9e-21	Mis12 protein
Mis12	PF05859	141 - 233	1.1e-09	Mis12 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35520
fragaria_vesca	FvH4_5g13000
malus_domestica	MD06G1208100.v1.1 MD14G1218500.v1.1
prunus_persica	Prupe.5G212600_v2.0.a1 Prupe.5G212600_v2.0.a1
pyrus_communis	pycom06g18590 pycom14g18110
rosa_chinensis	RchiOBHm_Chr7g0184161
rosa_laevigata	RLG00000004998
rosa_multiflora	Rmu_co8235265.1_g000001 Rmu_sc0012221.1_g000004
rosa_roxburghii	Rroxscaffold_3G00269840
rosa_rugosa	Rorug06G0463400 Rorug06G0463500
rosa_samantha	Rh7AG082400 Rh7BG064800 Rh7CG065200 Rh7DG064900
rosa_wichuraiana	Rw7G005310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	511, 610
AccI	GTMKAC	2 cut(s)	96, 147
AciI	CCGC	4 cut(s)	23, 50, 226, 336
AclWI	GGATC	1 cut(s)	413
AcsI	RAATTY	1 cut(s)	779
AcuI	CTGAAG	2 cut(s)	674, 690
AfiI	CCNNNNNNNGG	2 cut(s)	511, 610
AgsI	TTSAA	4 cut(s)	142, 209, 269, 776
AjnI	CCWGG	1 cut(s)	603
AluBI	AGCT	5 cut(s)	55, 164, 502, 652, 695
AluI	AGCT	5 cut(s)	55, 164, 502, 652, 695
Alw21I	GWGCWC	2 cut(s)	166, 504
Alw26I	GTCTC	1 cut(s)	554
AlwI	GGATC	1 cut(s)	413
ApeKI	GCWGC	3 cut(s)	52, 289, 485
ApoI	RAATTY	1 cut(s)	779
ArsI	GACNNNNNNTTYG	4 cut(s)	89, 121, 248, 280
Asp700I	GAANNNNTTC	1 cut(s)	771
AspLEI	GCGC	1 cut(s)	550
AspS9I	GGNCC	1 cut(s)	305
AsuHPI	GGTGA	3 cut(s)	386, 454, 485
AvaII	GGWCC	1 cut(s)	305
AxyI	CCTNAGG	1 cut(s)	276
BanII	GRGCYC	2 cut(s)	166, 504
BbsI	GAAGAC	1 cut(s)	662
Bbv12I	GWGCWC	2 cut(s)	166, 504
BbvI	GCAGC	3 cut(s)	64, 276, 472
BccI	CCATC	1 cut(s)	604
BceAI	ACGGC	1 cut(s)	166
BciT130I	CCWGG	1 cut(s)	605
BcoDI	GTCTC	1 cut(s)	554
BfaI	CTAG	2 cut(s)	173, 531
BglII	AGATCT	3 cut(s)	169, 699, 769
BisI	GCNGC	4 cut(s)	53, 227, 290, 486
BlsI	GCNGC	4 cut(s)	54, 228, 291, 487
Bme1390I	CCNGG	1 cut(s)	605
Bme18I	GGWCC	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	305
BmrFI	CCNGG	1 cut(s)	605
BmrI	ACTGGG	1 cut(s)	430
BmsI	GCATC	3 cut(s)	91, 137, 421
BmuI	ACTGGG	1 cut(s)	430
BpiI	GAAGAC	1 cut(s)	662
BpmI	CTGGAG	1 cut(s)	374
BpuEI	CTTGAG	1 cut(s)	150
BsaJI	CCNNGG	2 cut(s)	177, 465
Bsc4I	CCNNNNNNNGG	2 cut(s)	511, 610
Bse1I	ACTGG	1 cut(s)	436
Bse21I	CCTNAGG	1 cut(s)	276
Bse3DI	GCAATG	2 cut(s)	563, 748
BseBI	CCWGG	1 cut(s)	605
BseDI	CCNNGG	2 cut(s)	177, 465
BseGI	GGATG	2 cut(s)	436, 642
BseLI	CCNNNNNNNGG	2 cut(s)	511, 610
BseMI	GCAATG	2 cut(s)	563, 748
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	436
BseXI	GCAGC	3 cut(s)	64, 276, 472
BsgI	GTGCAG	1 cut(s)	471
BsiHKAI	GWGCWC	2 cut(s)	166, 504
BslI	CCNNNNNNNGG	2 cut(s)	511, 610
BsmAI	GTCTC	1 cut(s)	554
Bsp1286I	GDGCHC	2 cut(s)	166, 504
Bsp143I	GATC	4 cut(s)	169, 418, 699, 769
BspACI	CCGC	4 cut(s)	23, 50, 226, 336
BspCNI	CTCAG	1 cut(s)	268
BspHI	TCATGA	1 cut(s)	592
BspPI	GGATC	1 cut(s)	413
BsrDI	GCAATG	2 cut(s)	563, 748
BsrI	ACTGG	1 cut(s)	436
BssECI	CCNNGG	2 cut(s)	177, 465
BssMI	GATC	4 cut(s)	169, 418, 699, 769
BssT1I	CCWWGG	2 cut(s)	177, 465
Bst2UI	CCWGG	1 cut(s)	605
Bst4CI	ACNGT	5 cut(s)	82, 251, 263, 522, 539
BstDEI	CTNAG	3 cut(s)	276, 632, 696
BstF5I	GGATG	2 cut(s)	436, 642
BstHHI	GCGC	1 cut(s)	550
BstKTI	GATC	4 cut(s)	172, 421, 702, 772
BstMAI	GTCTC	1 cut(s)	554
BstMBI	GATC	4 cut(s)	169, 418, 699, 769
BstMWI	GCNNNNNNNGC	1 cut(s)	674
BstNI	CCWGG	1 cut(s)	605
BstSCI	CCNGG	1 cut(s)	603
BstV1I	GCAGC	3 cut(s)	64, 276, 472
BstV2I	GAAGAC	1 cut(s)	662
BstX2I	RGATCY	3 cut(s)	169, 699, 769
BstYI	RGATCY	3 cut(s)	169, 699, 769
Bsu36I	CCTNAGG	1 cut(s)	276
BtsCI	GGATG	2 cut(s)	436, 642
BtsI	GCAGTG	1 cut(s)	371
BtsIMutI	CAGTG	4 cut(s)	153, 259, 371, 488
CciI	TCATGA	1 cut(s)	592
CfoI	GCGC	1 cut(s)	550
Cfr13I	GGNCC	1 cut(s)	305
CviAII	CATG	1 cut(s)	593
CviJI	RGCY	9 cut(s)	55, 164, 176, 229, 502, 652, 668, 695, 747
CviKI_1	RGCY	9 cut(s)	55, 164, 176, 229, 502, 652, 668, 695, 747
DdeI	CTNAG	3 cut(s)	276, 632, 696
DpnI	GATC	4 cut(s)	171, 420, 701, 771
DpnII	GATC	4 cut(s)	169, 418, 699, 769
Ecl136II	GAGCTC	2 cut(s)	164, 502
Eco130I	CCWWGG	2 cut(s)	177, 465
Eco24I	GRGCYC	2 cut(s)	166, 504
Eco47I	GGWCC	1 cut(s)	305
Eco53kI	GAGCTC	2 cut(s)	164, 502
Eco57I	CTGAAG	2 cut(s)	674, 690
Eco81I	CCTNAGG	1 cut(s)	276
EcoICRI	GAGCTC	2 cut(s)	164, 502
EcoO109I	RGGNCCY	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	603
EcoT14I	CCWWGG	2 cut(s)	177, 465
EcoT38I	GRGCYC	2 cut(s)	166, 504
ErhI	CCWWGG	2 cut(s)	177, 465
FaeI	CATG	1 cut(s)	596
FaiI	YATR	6 cut(s)	236, 400, 574, 576, 594, 794
FatI	CATG	1 cut(s)	592
FblI	GTMKAC	2 cut(s)	96, 147
Fnu4HI	GCNGC	4 cut(s)	53, 227, 290, 486
FokI	GGATG	2 cut(s)	443, 649
FriOI	GRGCYC	2 cut(s)	166, 504
Fsp4HI	GCNGC	4 cut(s)	53, 227, 290, 486
FspBI	CTAG	2 cut(s)	173, 531
GlaI	GCGC	1 cut(s)	549
GluI	GCNGC	4 cut(s)	53, 227, 290, 486
GsuI	CTGGAG	1 cut(s)	374
HhaI	GCGC	1 cut(s)	550
Hin1II	CATG	1 cut(s)	596
Hin6I	GCGC	1 cut(s)	548
HinP1I	GCGC	1 cut(s)	548
HincII	GTYRAC	2 cut(s)	97, 148
HindII	GTYRAC	2 cut(s)	97, 148
HinfI	GANTC	6 cut(s)	32, 46, 356, 443, 479, 719
HphI	GGTGA	3 cut(s)	386, 454, 485
Hpy166II	GTNNAC	3 cut(s)	40, 97, 148
Hpy188III	TCNNGA	7 cut(s)	167, 254, 275, 353, 422, 593, 776
Hpy8I	GTNNAC	3 cut(s)	40, 97, 148
Hpy99I	CGWCG	3 cut(s)	86, 101, 152
HpyAV	CCTTC	1 cut(s)	665
HpyCH4III	ACNGT	5 cut(s)	82, 251, 263, 522, 539
HpyCH4V	TGCA	4 cut(s)	410, 488, 568, 758
HpyF10VI	GCNNNNNNNGC	1 cut(s)	674
HpyF3I	CTNAG	3 cut(s)	276, 632, 696
Hsp92II	CATG	1 cut(s)	596
HspAI	GCGC	1 cut(s)	548
Kzo9I	GATC	4 cut(s)	169, 418, 699, 769
LmnI	GCTCC	3 cut(s)	241, 507, 674
Lsp1109I	GCAGC	3 cut(s)	64, 276, 472
LweI	GCATC	3 cut(s)	91, 137, 421
MaeI	CTAG	2 cut(s)	173, 531
MaeIII	GTNAC	2 cut(s)	245, 533
MalI	GATC	4 cut(s)	171, 420, 701, 771
MboI	GATC	4 cut(s)	169, 418, 699, 769
MboII	GAAGA	3 cut(s)	667, 764, 779
MflI	RGATCY	3 cut(s)	169, 699, 769
MhlI	GDGCHC	2 cut(s)	166, 504
MluCI	AATT	4 cut(s)	318, 343, 506, 779
MlyI	GAGTC	2 cut(s)	41, 365
MmeI	TCCRAC	2 cut(s)	420, 744
MnlI	CCTC	5 cut(s)	13, 61, 271, 444, 469
MroXI	GAANNNNTTC	1 cut(s)	771
MseI	TTAA	4 cut(s)	186, 317, 342, 615
MspA1I	CMGCKG	1 cut(s)	55
MspR9I	CCNGG	1 cut(s)	605
MvaI	CCWGG	1 cut(s)	605
MwoI	GCNNNNNNNGC	1 cut(s)	674
NdeII	GATC	4 cut(s)	169, 418, 699, 769
NlaIII	CATG	1 cut(s)	596
NmuCI	GTSAC	1 cut(s)	533
PagI	TCATGA	1 cut(s)	592
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	771
PfeI	GAWTC	4 cut(s)	46, 443, 479, 719
PflMI	CCANNNNNTGG	2 cut(s)	511, 610
PfoI	TCCNGGA	1 cut(s)	603
PkrI	GCNGC	4 cut(s)	54, 228, 291, 487
PleI	GAGTC	2 cut(s)	40, 364
PpsI	GAGTC	2 cut(s)	40, 364
PpuMI	RGGWCCY	1 cut(s)	305
Psp124BI	GAGCTC	2 cut(s)	166, 504
Psp5II	RGGWCCY	1 cut(s)	305
Psp6I	CCWGG	1 cut(s)	603
PspGI	CCWGG	1 cut(s)	603
PspPI	GGNCC	1 cut(s)	305
PspPPI	RGGWCCY	1 cut(s)	305
PsuI	RGATCY	3 cut(s)	169, 699, 769
PvuII	CAGCTG	1 cut(s)	55
SacI	GAGCTC	2 cut(s)	166, 504
SalI	GTCGAC	2 cut(s)	95, 146
SaqAI	TTAA	4 cut(s)	186, 317, 342, 615
SatI	GCNGC	4 cut(s)	53, 227, 290, 486
Sau3AI	GATC	4 cut(s)	169, 418, 699, 769
Sau96I	GGNCC	1 cut(s)	305
SchI	GAGTC	2 cut(s)	41, 365
ScrFI	CCNGG	1 cut(s)	605
SduI	GDGCHC	2 cut(s)	166, 504
SfaNI	GCATC	3 cut(s)	91, 137, 421
SinI	GGWCC	1 cut(s)	305
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
Sse9I	AATT	4 cut(s)	318, 343, 506, 779
SsiI	CCGC	4 cut(s)	23, 50, 226, 336
SspMI	CTAG	2 cut(s)	173, 531
SstI	GAGCTC	2 cut(s)	166, 504
StyD4I	CCNGG	1 cut(s)	603
StyI	CCWWGG	2 cut(s)	177, 465
TaaI	ACNGT	5 cut(s)	82, 251, 263, 522, 539
TaqI	TCGA	4 cut(s)	96, 108, 131, 147
TaqII	GACCGA	1 cut(s)	594
TasI	AATT	4 cut(s)	318, 343, 506, 779
TauI	GCSGC	1 cut(s)	229
TfiI	GAWTC	4 cut(s)	46, 443, 479, 719
Tru1I	TTAA	4 cut(s)	186, 317, 342, 615
Tru9I	TTAA	4 cut(s)	186, 317, 342, 615
TscAI	CASTG	4 cut(s)	160, 266, 371, 495
TseFI	GTSAC	1 cut(s)	533
TseI	GCWGC	3 cut(s)	52, 289, 485
Tsp45I	GTSAC	1 cut(s)	533
TspDTI	ATGAA	5 cut(s)	49, 581, 653, 711, 746
TspRI	CASTG	4 cut(s)	160, 266, 371, 495
Van91I	CCANNNNNTGG	2 cut(s)	511, 610
VpaK11BI	GGWCC	1 cut(s)	305
XapI	RAATTY	1 cut(s)	779
XmiI	GTMKAC	2 cut(s)	96, 147
XmnI	GAANNNNTTC	1 cut(s)	771
XspI	CTAG	2 cut(s)	173, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.