Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0011148

Physical Location & Seq

Genomic Coordinates Reverse (-)

5031848 .. 5034633

Gene Structure 2786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG064900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGAAGGGAGGGAAAGCGAGGCGGTGTTTGATTCGGTGAACCTGAATCCGCAGCTGTTCATCAACGAGGTCATCAACACCGTCGACGATTTGGTCGACGATGCGTTCGATTACTTCCAGCAGGAAGCATCGACCTCTTTGAAAGTCGAAGGCACTGACAGAGCTCAAGATCTAGCCAAGGGCGTTAATCTCATTCGCAAAATGGTTCAATCGAATGTTGATAAGCGGCTGGTTATGTGGGAGCGGTACTGTCTTGACCACTGTTTTGAAGTTCCAGAGGGGTTTGTGCTGCCCAAAAGTGGTGAAACACCTGTTGATAGTTCTGTATGTCAAAATGCAATCTGTGATCCAGAAGTGGATGCCAAGTTGGATTCGTTGAGGAACAAACTCACCAAGGTTGGTGAGGAATCTGCTGCACTGAACCGAGAGCTCCAATTATTGGAACAACAGTCTGCTTCTAGTAACCGTTTATCTGTGCTTGTCAATGAGACATTGCAGTTATATGACCGAAGCTCTTTTCATGAGATGTTCCAGGAGATGGTTAAAACATCATCACAACTTAGGATGAAAACAGCAAAGCTGAAGACCAGAAAGGCTGAAGAAGCGAAACAGAATAAGATAGATAAGATCTACAATCGATACAGAGATTCATCTGTGATGAATGATAGCAATGGTAACAGCTATAAAATGTTCATGATAGTCGGTGGTTTTGCAAGTGGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000444 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000818 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0008104 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034501 GO:0034502 GO:0034508 GO:0034613 GO:0034622 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0048285 GO:0051179 GO:0051276 GO:0051382 GO:0051383 GO:0051641 GO:0065003 GO:0065004 GO:0070013 GO:0070727 GO:0070925 GO:0071459 GO:0071824 GO:0071840 GO:0098687 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mis12

Protein Analysis

241

Amino Acids

27.32

Weight (kDa)

5.0

Isoelectric Point (pI)

41.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mis12	PF05859	8 - 218	9.2e-37	Mis12 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35520
fragaria_vesca	FvH4_5g13000
malus_domestica	MD06G1208100.v1.1 MD14G1218500.v1.1
prunus_persica	Prupe.5G212600_v2.0.a1 Prupe.5G212600_v2.0.a1
pyrus_communis	pycom06g18590 pycom14g18110
rosa_chinensis	RchiOBHm_Chr7g0184161
rosa_laevigata	RLG00000004998
rosa_multiflora	Rmu_co8235265.1_g000001 Rmu_sc0012221.1_g000004
rosa_roxburghii	Rroxscaffold_3G00269840
rosa_rugosa	Rorug06G0463400 Rorug06G0463500
rosa_samantha	Rh7AG082400 Rh7BG064800 Rh7CG065200 Rh7DG064900
rosa_wichuraiana	Rw7G005310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
AccB7I	CCANNNNNTGG	2 cut(s)	439, 538
AccBSI	CCGCTC	1 cut(s)	244
AccI	GTMKAC	2 cut(s)	84, 96
AciI	CCGC	4 cut(s)	23, 50, 226, 244
AclWI	GGATC	1 cut(s)	341
AcsI	RAATTY	1 cut(s)	720
AcuI	CTGAAG	2 cut(s)	602, 618
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	3 cut(s)	299, 439, 538
AgsI	TTSAA	3 cut(s)	142, 209, 269
AjnI	CCWGG	1 cut(s)	531
AluBI	AGCT	6 cut(s)	55, 164, 430, 513, 580, 681
AluI	AGCT	6 cut(s)	55, 164, 430, 513, 580, 681
Alw21I	GWGCWC	2 cut(s)	166, 432
Alw26I	GTCTC	1 cut(s)	482
AlwI	GGATC	1 cut(s)	341
ApeKI	GCWGC	3 cut(s)	52, 289, 413
ApoI	RAATTY	1 cut(s)	720
ArsI	GACNNNNNNTTYG	4 cut(s)	89, 121, 248, 280
AsuHPI	GGTGA	4 cut(s)	49, 314, 382, 413
BanII	GRGCYC	2 cut(s)	166, 432
BbsI	GAAGAC	1 cut(s)	590
Bbv12I	GWGCWC	2 cut(s)	166, 432
BbvI	GCAGC	3 cut(s)	64, 276, 400
BccI	CCATC	1 cut(s)	532
BciT130I	CCWGG	1 cut(s)	533
BcoDI	GTCTC	1 cut(s)	482
BfaI	CTAG	2 cut(s)	173, 459
BglII	AGATCT	2 cut(s)	169, 627
BisI	GCNGC	4 cut(s)	53, 227, 290, 414
BlsI	GCNGC	4 cut(s)	54, 228, 291, 415
Bme1390I	CCNGG	1 cut(s)	533
BmrFI	CCNGG	1 cut(s)	533
BmsI	GCATC	3 cut(s)	91, 137, 349
BpiI	GAAGAC	1 cut(s)	590
BpuEI	CTTGAG	1 cut(s)	150
Bsa29I	ATCGAT	1 cut(s)	637
BsaJI	CCNNGG	2 cut(s)	177, 393
Bsc4I	CCNNNNNNNGG	3 cut(s)	299, 439, 538
Bse3DI	GCAATG	2 cut(s)	491, 676
BseBI	CCWGG	1 cut(s)	533
BseCI	ATCGAT	1 cut(s)	637
BseDI	CCNNGG	2 cut(s)	177, 393
BseGI	GGATG	2 cut(s)	364, 570
BseLI	CCNNNNNNNGG	3 cut(s)	299, 439, 538
BseMI	GCAATG	2 cut(s)	491, 676
BseXI	GCAGC	3 cut(s)	64, 276, 400
BsgI	GTGCAG	1 cut(s)	399
BshVI	ATCGAT	1 cut(s)	637
BsiHKAI	GWGCWC	2 cut(s)	166, 432
BslI	CCNNNNNNNGG	3 cut(s)	299, 439, 538
BsmAI	GTCTC	1 cut(s)	482
Bsp1286I	GDGCHC	2 cut(s)	166, 432
Bsp143I	GATC	3 cut(s)	169, 346, 627
BspACI	CCGC	4 cut(s)	23, 50, 226, 244
BspDI	ATCGAT	1 cut(s)	637
BspHI	TCATGA	2 cut(s)	520, 693
BspPI	GGATC	1 cut(s)	341
BsrBI	CCGCTC	1 cut(s)	244
BsrDI	GCAATG	2 cut(s)	491, 676
BssECI	CCNNGG	2 cut(s)	177, 393
BssMI	GATC	3 cut(s)	169, 346, 627
BssT1I	CCWWGG	2 cut(s)	177, 393
Bst2UI	CCWGG	1 cut(s)	533
Bst4CI	ACNGT	5 cut(s)	82, 251, 263, 450, 467
BstDEI	CTNAG	1 cut(s)	560
BstF5I	GGATG	2 cut(s)	364, 570
BstKTI	GATC	3 cut(s)	172, 349, 630
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	3 cut(s)	169, 346, 627
BstMWI	GCNNNNNNNGC	1 cut(s)	602
BstNI	CCWGG	1 cut(s)	533
BstSCI	CCNGG	1 cut(s)	531
BstV1I	GCAGC	3 cut(s)	64, 276, 400
BstV2I	GAAGAC	1 cut(s)	590
BstX2I	RGATCY	2 cut(s)	169, 627
BstYI	RGATCY	2 cut(s)	169, 627
Bsu15I	ATCGAT	1 cut(s)	637
BsuTUI	ATCGAT	1 cut(s)	637
BtsCI	GGATG	2 cut(s)	364, 570
BtsIMutI	CAGTG	3 cut(s)	153, 259, 416
CciI	TCATGA	2 cut(s)	520, 693
ClaI	ATCGAT	1 cut(s)	637
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	2 cut(s)	521, 694
CviJI	RGCY	9 cut(s)	55, 164, 176, 229, 430, 513, 580, 596, 681
CviKI_1	RGCY	9 cut(s)	55, 164, 176, 229, 430, 513, 580, 596, 681
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	1 cut(s)	560
DpnI	GATC	3 cut(s)	171, 348, 629
DpnII	GATC	3 cut(s)	169, 346, 627
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
Ecl136II	GAGCTC	2 cut(s)	164, 430
Eco130I	CCWWGG	2 cut(s)	177, 393
Eco24I	GRGCYC	2 cut(s)	166, 432
Eco53kI	GAGCTC	2 cut(s)	164, 430
Eco57I	CTGAAG	2 cut(s)	602, 618
EcoICRI	GAGCTC	2 cut(s)	164, 430
EcoRII	CCWGG	1 cut(s)	531
EcoT14I	CCWWGG	2 cut(s)	177, 393
EcoT38I	GRGCYC	2 cut(s)	166, 432
ErhI	CCWWGG	2 cut(s)	177, 393
FaeI	CATG	2 cut(s)	524, 697
FaiI	YATR	7 cut(s)	236, 328, 502, 504, 522, 684, 695
FatI	CATG	2 cut(s)	520, 693
FblI	GTMKAC	2 cut(s)	84, 96
Fnu4HI	GCNGC	4 cut(s)	53, 227, 290, 414
FokI	GGATG	2 cut(s)	371, 577
FriOI	GRGCYC	2 cut(s)	166, 432
Fsp4HI	GCNGC	4 cut(s)	53, 227, 290, 414
FspBI	CTAG	2 cut(s)	173, 459
GluI	GCNGC	4 cut(s)	53, 227, 290, 414
Hin1II	CATG	2 cut(s)	524, 697
HincII	GTYRAC	2 cut(s)	85, 97
HindII	GTYRAC	2 cut(s)	85, 97
HinfI	GANTC	5 cut(s)	32, 46, 371, 407, 647
HphI	GGTGA	4 cut(s)	49, 314, 382, 413
Hpy166II	GTNNAC	3 cut(s)	40, 85, 97
Hpy188III	TCNNGA	6 cut(s)	167, 254, 275, 350, 521, 694
Hpy8I	GTNNAC	3 cut(s)	40, 85, 97
Hpy99I	CGWCG	3 cut(s)	86, 89, 101
HpyAV	CCTTC	1 cut(s)	143
HpyCH4III	ACNGT	5 cut(s)	82, 251, 263, 450, 467
HpyCH4V	TGCA	4 cut(s)	338, 416, 496, 713
HpyF10VI	GCNNNNNNNGC	1 cut(s)	602
HpyF3I	CTNAG	1 cut(s)	560
Hsp92II	CATG	2 cut(s)	524, 697
Kzo9I	GATC	3 cut(s)	169, 346, 627
LmnI	GCTCC	2 cut(s)	241, 435
Lsp1109I	GCAGC	3 cut(s)	64, 276, 400
LweI	GCATC	3 cut(s)	91, 137, 349
MaeI	CTAG	2 cut(s)	173, 459
MaeIII	GTNAC	2 cut(s)	461, 674
MalI	GATC	3 cut(s)	171, 348, 629
MbiI	CCGCTC	1 cut(s)	244
MboI	GATC	3 cut(s)	169, 346, 627
MboII	GAAGA	2 cut(s)	595, 611
MflI	RGATCY	2 cut(s)	169, 627
MhlI	GDGCHC	2 cut(s)	166, 432
MluCI	AATT	2 cut(s)	434, 720
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	7 cut(s)	3, 13, 61, 145, 271, 372, 397
MseI	TTAA	3 cut(s)	186, 543, 724
MspA1I	CMGCKG	1 cut(s)	55
MspR9I	CCNGG	1 cut(s)	533
MvaI	CCWGG	1 cut(s)	533
MwoI	GCNNNNNNNGC	1 cut(s)	602
NdeII	GATC	3 cut(s)	169, 346, 627
NlaIII	CATG	2 cut(s)	524, 697
PagI	TCATGA	2 cut(s)	520, 693
PcsI	WCGNNNNNNNCGW	2 cut(s)	93, 105
PfeI	GAWTC	5 cut(s)	32, 46, 371, 407, 647
PflMI	CCANNNNNTGG	2 cut(s)	439, 538
PfoI	TCCNGGA	1 cut(s)	531
PkrI	GCNGC	4 cut(s)	54, 228, 291, 415
Psp124BI	GAGCTC	2 cut(s)	166, 432
Psp6I	CCWGG	1 cut(s)	531
PspGI	CCWGG	1 cut(s)	531
PsuI	RGATCY	2 cut(s)	169, 627
PvuII	CAGCTG	1 cut(s)	55
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SacI	GAGCTC	2 cut(s)	166, 432
SalI	GTCGAC	2 cut(s)	83, 95
SaqAI	TTAA	3 cut(s)	186, 543, 724
SatI	GCNGC	4 cut(s)	53, 227, 290, 414
Sau3AI	GATC	3 cut(s)	169, 346, 627
ScrFI	CCNGG	1 cut(s)	533
SduI	GDGCHC	2 cut(s)	166, 432
SfaNI	GCATC	3 cut(s)	91, 137, 349
SgrDI	CGTCGACG	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
Sse9I	AATT	2 cut(s)	434, 720
SsiI	CCGC	4 cut(s)	23, 50, 226, 244
SspMI	CTAG	2 cut(s)	173, 459
SstI	GAGCTC	2 cut(s)	166, 432
StyD4I	CCNGG	1 cut(s)	531
StyI	CCWWGG	2 cut(s)	177, 393
TaaI	ACNGT	5 cut(s)	82, 251, 263, 450, 467
TaqI	TCGA	7 cut(s)	84, 96, 108, 131, 147, 212, 637
TaqII	GACCGA	1 cut(s)	522
TasI	AATT	2 cut(s)	434, 720
TauI	GCSGC	1 cut(s)	229
TfiI	GAWTC	5 cut(s)	32, 46, 371, 407, 647
Tru1I	TTAA	3 cut(s)	186, 543, 724
Tru9I	TTAA	3 cut(s)	186, 543, 724
TscAI	CASTG	3 cut(s)	160, 266, 423
TseI	GCWGC	3 cut(s)	52, 289, 413
TspDTI	ATGAA	6 cut(s)	49, 509, 581, 639, 674, 682
TspRI	CASTG	3 cut(s)	160, 266, 423
Van91I	CCANNNNNTGG	2 cut(s)	439, 538
XapI	RAATTY	1 cut(s)	720
XmiI	GTMKAC	2 cut(s)	84, 96
XspI	CTAG	2 cut(s)	173, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.