Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011148

Physical Location & Seq

Genomic Coordinates Forward (+)

58878886 .. 58879302

Gene Structure 417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0463500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGAGTCGTATCAGAAGCCGGAAGATTACTCGGCCCTATCATCCGGCGACACTGCTAGTACTGTCAAGTTTTTGTGCTCAACCGCAATTGGTATCACGCTATATTTCTTGTCCGGGTTAACTTTAACCGGGACTTTGATGGCGCTGATCGTGGTTACGCCAGCTGTAGTGTTGTTTAGTCCGATTCTGGTTCCGGCAGGGATATTCGTACTCCTAGTCGGAGCTGGTTTTGTGTCGTCGGTGGTGGGTGCAATATGGGCATTATCGTTGTTGTATAAGTACGCGTCGAAGAAAATGAATTGGACGCAGTTTTTATTTGATCTGGGGCGTAGGCTTGTGAGGAAGTACTTGCAAATGAGATTCGGGTGGATTGGTTGGTTATGGTCATTGTGGGAGTGGGTTAAGTGGTTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000444 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000818 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0008104 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034501 GO:0034502 GO:0034508 GO:0034613 GO:0034622 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0048285 GO:0051179 GO:0051276 GO:0051382 GO:0051383 GO:0051641 GO:0065003 GO:0065004 GO:0070013 GO:0070727 GO:0070925 GO:0071459 GO:0071824 GO:0071840 GO:0098687 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mis12

Protein Analysis

138

Amino Acids

15.55

Weight (kDa)

9.52

Isoelectric Point (pI)

29.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oleosin	PF01277	21 - 101	9.6e-20	Oleosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35520
fragaria_vesca	FvH4_5g13000
malus_domestica	MD06G1208100.v1.1 MD14G1218500.v1.1
prunus_persica	Prupe.5G212600_v2.0.a1 Prupe.5G212600_v2.0.a1
pyrus_communis	pycom06g18590 pycom14g18110
rosa_chinensis	RchiOBHm_Chr7g0184161
rosa_laevigata	RLG00000004998
rosa_multiflora	Rmu_co8235265.1_g000001 Rmu_sc0012221.1_g000004
rosa_roxburghii	Rroxscaffold_3G00269840
rosa_rugosa	Rorug06G0463400 Rorug06G0463500
rosa_samantha	Rh7AG082400 Rh7BG064800 Rh7CG065200 Rh7DG064900
rosa_wichuraiana	Rw7G005310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	284
AciI	CCGC	1 cut(s)	84
AfaI	GTAC	4 cut(s)	61, 210, 281, 347
AflIII	ACRYGT	1 cut(s)	282
AluBI	AGCT	2 cut(s)	164, 224
AluI	AGCT	2 cut(s)	164, 224
Alw21I	GWGCWC	1 cut(s)	80
AoxI	GGCC	1 cut(s)	33
AspLEI	GCGC	1 cut(s)	145
AspS9I	GGNCC	1 cut(s)	34
AsuC2I	CCSGG	2 cut(s)	115, 130
Bbv12I	GWGCWC	1 cut(s)	80
BccI	CCATC	1 cut(s)	133
BcnI	CCSGG	2 cut(s)	115, 130
BfaI	CTAG	2 cut(s)	57, 215
BfmI	CTRYAG	1 cut(s)	165
BfoI	RGCGCY	1 cut(s)	146
BmcAI	AGTACT	2 cut(s)	61, 347
Bme1390I	CCNGG	2 cut(s)	115, 130
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	192
BmrFI	CCNGG	2 cut(s)	115, 130
BpuMI	CCSGG	2 cut(s)	115, 130
BseGI	GGATG	1 cut(s)	41
Bsh1236I	CGCG	1 cut(s)	284
BshFI	GGCC	1 cut(s)	35
BsiHKAI	GWGCWC	1 cut(s)	80
BsiSI	CCGG	5 cut(s)	20, 45, 114, 129, 194
BslFI	GGGAC	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp143I	GATC	2 cut(s)	147, 319
BspACI	CCGC	1 cut(s)	84
BspANI	GGCC	1 cut(s)	35
BspFNI	CGCG	1 cut(s)	284
BspLI	GGNNCC	1 cut(s)	192
BssMI	GATC	2 cut(s)	147, 319
Bst4CI	ACNGT	1 cut(s)	64
BstC8I	GCNNGC	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	41
BstFNI	CGCG	1 cut(s)	284
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	2 cut(s)	150, 322
BstMBI	GATC	2 cut(s)	147, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstSCI	CCNGG	2 cut(s)	113, 128
BstSFI	CTRYAG	1 cut(s)	165
BstUI	CGCG	1 cut(s)	284
BsuRI	GGCC	1 cut(s)	35
BtsCI	GGATG	1 cut(s)	41
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	1 cut(s)	162
CfoI	GCGC	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	34
CseI	GACGC	2 cut(s)	273, 313
Csp6I	GTAC	4 cut(s)	60, 209, 280, 346
CviJI	RGCY	5 cut(s)	19, 35, 164, 224, 334
CviKI_1	RGCY	5 cut(s)	19, 35, 164, 224, 334
CviQI	GTAC	4 cut(s)	60, 209, 280, 346
DpnI	GATC	2 cut(s)	149, 321
DpnII	GATC	2 cut(s)	147, 319
FaiI	YATR	5 cut(s)	103, 256, 276, 382, 413
FaqI	GGGAC	1 cut(s)	145
FokI	GGATG	1 cut(s)	28
FspBI	CTAG	2 cut(s)	57, 215
GlaI	GCGC	1 cut(s)	144
HaeII	RGCGCY	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	5 cut(s)	20, 45, 114, 129, 194
HgaI	GACGC	2 cut(s)	273, 313
HhaI	GCGC	1 cut(s)	145
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HincII	GTYRAC	1 cut(s)	120
HindII	GTYRAC	1 cut(s)	120
HinfI	GANTC	3 cut(s)	5, 184, 360
HpaI	GTTAAC	1 cut(s)	120
HpaII	CCGG	5 cut(s)	20, 45, 114, 129, 194
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188I	TCNGA	3 cut(s)	15, 183, 221
Hpy8I	GTNNAC	1 cut(s)	120
Hpy99I	CGWCG	2 cut(s)	241, 289
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4V	TGCA	2 cut(s)	251, 352
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HspAI	GCGC	1 cut(s)	143
KspAI	GTTAAC	1 cut(s)	120
Kzo9I	GATC	2 cut(s)	147, 319
LmnI	GCTCC	1 cut(s)	221
MaeI	CTAG	2 cut(s)	57, 215
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	2 cut(s)	149, 321
MboI	GATC	2 cut(s)	147, 319
MboII	GAAGA	2 cut(s)	35, 301
MfeI	CAATTG	1 cut(s)	87
MhlI	GDGCHC	1 cut(s)	80
MluCI	AATT	2 cut(s)	87, 298
MluI	ACGCGT	1 cut(s)	282
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	1 cut(s)	333
MseI	TTAA	3 cut(s)	119, 125, 402
MspA1I	CMGCKG	1 cut(s)	164
MspI	CCGG	5 cut(s)	20, 45, 114, 129, 194
MspR9I	CCNGG	2 cut(s)	115, 130
MunI	CAATTG	1 cut(s)	87
MvnI	CGCG	1 cut(s)	284
MwoI	GCNNNNNNNGC	1 cut(s)	257
NciI	CCSGG	2 cut(s)	115, 130
NdeII	GATC	2 cut(s)	147, 319
NlaIV	GGNNCC	1 cut(s)	192
NmeAIII	GCCGAG	1 cut(s)	11
PfeI	GAWTC	2 cut(s)	184, 360
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	192
PspPI	GGNCC	1 cut(s)	34
PvuII	CAGCTG	1 cut(s)	164
RsaI	GTAC	4 cut(s)	61, 210, 281, 347
RsaNI	GTAC	4 cut(s)	60, 209, 280, 346
SaqAI	TTAA	3 cut(s)	119, 125, 402
Sau3AI	GATC	2 cut(s)	147, 319
Sau96I	GGNCC	1 cut(s)	34
ScaI	AGTACT	2 cut(s)	61, 347
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	2 cut(s)	115, 130
SduI	GDGCHC	1 cut(s)	80
SetI	ASST	2 cut(s)	166, 226
SfcI	CTRYAG	1 cut(s)	165
Sse9I	AATT	2 cut(s)	87, 298
SsiI	CCGC	1 cut(s)	84
SspMI	CTAG	2 cut(s)	57, 215
StyD4I	CCNGG	2 cut(s)	113, 128
TaaI	ACNGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	287
TasI	AATT	2 cut(s)	87, 298
TatI	WGTACW	2 cut(s)	59, 345
TfiI	GAWTC	2 cut(s)	184, 360
Tru1I	TTAA	3 cut(s)	119, 125, 402
Tru9I	TTAA	3 cut(s)	119, 125, 402
TscAI	CASTG	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	311
TspRI	CASTG	1 cut(s)	58
XspI	CTAG	2 cut(s)	57, 215
ZrmI	AGTACT	2 cut(s)	61, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.