Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012221.1

Orthogroup ID

OG0011148

Physical Location & Seq

Genomic Coordinates Reverse (-)

8891 .. 10615

Gene Structure 1725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012221.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atggttcaatcgaatgttgataagcggctggttatgtgggagcggtactgtcttgaccactgttttgaagttccagaggggtttgtgctgcccaaaagtggtgaaacacctgttgatagttctgtatgtcaaaatgcaatctgtgatccagaagtggatgccgagttggattcgttgaggaacaaactcaccaaggttggtgaggaatctgctgcactgaaccgagagctccaattattggaacgacagtctgcttctagtaaccgtttatctgcgggattcgttgaggaacaaactcaccaagagatggttaaaacatcatcacaacttaggatgaaaacagcaaagctgaagaccagaaaggctgaagaagcgaaacagaataagatagataagatctacaatcgatacagagattcatctgtgatgaatgatagcaatggtaacagctataaaatgttcatgatagtcggtggttttgcaagtggaatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000444 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000818 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0008104 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034501 GO:0034502 GO:0034508 GO:0034613 GO:0034622 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0048285 GO:0051179 GO:0051276 GO:0051382 GO:0051383 GO:0051641 GO:0065003 GO:0065004 GO:0070013 GO:0070727 GO:0070925 GO:0071459 GO:0071824 GO:0071840 GO:0098687 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mis12

Protein Analysis

164

Amino Acids

18.53

Weight (kDa)

6.17

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35520
fragaria_vesca	FvH4_5g13000
malus_domestica	MD06G1208100.v1.1 MD14G1218500.v1.1
prunus_persica	Prupe.5G212600_v2.0.a1 Prupe.5G212600_v2.0.a1
pyrus_communis	pycom06g18590 pycom14g18110
rosa_chinensis	RchiOBHm_Chr7g0184161
rosa_laevigata	RLG00000004998
rosa_multiflora	Rmu_co8235265.1_g000001 Rmu_sc0012221.1_g000004
rosa_roxburghii	Rroxscaffold_3G00269840
rosa_rugosa	Rorug06G0463400 Rorug06G0463500
rosa_samantha	Rh7AG082400 Rh7BG064800 Rh7CG065200 Rh7DG064900
rosa_wichuraiana	Rw7G005310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	238, 307
AccBSI	CCGCTC	1 cut(s)	43
AciI	CCGC	3 cut(s)	25, 43, 275
AclWI	GGATC	1 cut(s)	140
AcsI	RAATTY	1 cut(s)	489
AcuI	CTGAAG	2 cut(s)	371, 387
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	3 cut(s)	98, 238, 307
AgsI	TTSAA	2 cut(s)	8, 68
AluBI	AGCT	3 cut(s)	229, 349, 450
AluI	AGCT	3 cut(s)	229, 349, 450
Alw21I	GWGCWC	1 cut(s)	231
AlwI	GGATC	1 cut(s)	140
ApeKI	GCWGC	2 cut(s)	88, 212
ApoI	RAATTY	1 cut(s)	489
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
AsuHPI	GGTGA	4 cut(s)	113, 181, 212, 290
BanII	GRGCYC	1 cut(s)	231
BbsI	GAAGAC	1 cut(s)	359
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	2 cut(s)	75, 199
BccI	CCATC	1 cut(s)	301
BfaI	CTAG	1 cut(s)	258
BglII	AGATCT	1 cut(s)	396
BisI	GCNGC	3 cut(s)	26, 89, 213
BlsI	GCNGC	3 cut(s)	27, 90, 214
BmsI	GCATC	1 cut(s)	148
BpiI	GAAGAC	1 cut(s)	359
Bsa29I	ATCGAT	1 cut(s)	406
BsaJI	CCNNGG	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 238, 307
Bse3DI	GCAATG	1 cut(s)	445
BseCI	ATCGAT	1 cut(s)	406
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	2 cut(s)	163, 339
BseLI	CCNNNNNNNGG	3 cut(s)	98, 238, 307
BseMI	GCAATG	1 cut(s)	445
BseXI	GCAGC	2 cut(s)	75, 199
BsgI	GTGCAG	1 cut(s)	198
BshVI	ATCGAT	1 cut(s)	406
BsiHKAI	GWGCWC	1 cut(s)	231
BslI	CCNNNNNNNGG	3 cut(s)	98, 238, 307
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	2 cut(s)	145, 396
BspACI	CCGC	3 cut(s)	25, 43, 275
BspDI	ATCGAT	1 cut(s)	406
BspHI	TCATGA	1 cut(s)	462
BspPI	GGATC	1 cut(s)	140
BsrBI	CCGCTC	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	445
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	2 cut(s)	145, 396
BssT1I	CCWWGG	1 cut(s)	192
Bst4CI	ACNGT	4 cut(s)	50, 62, 249, 266
BstDEI	CTNAG	1 cut(s)	329
BstF5I	GGATG	2 cut(s)	163, 339
BstKTI	GATC	2 cut(s)	148, 399
BstMBI	GATC	2 cut(s)	145, 396
BstMWI	GCNNNNNNNGC	1 cut(s)	371
BstV1I	GCAGC	2 cut(s)	75, 199
BstV2I	GAAGAC	1 cut(s)	359
BstX2I	RGATCY	1 cut(s)	396
BstYI	RGATCY	1 cut(s)	396
Bsu15I	ATCGAT	1 cut(s)	406
BsuTUI	ATCGAT	1 cut(s)	406
BtsCI	GGATG	2 cut(s)	163, 339
BtsIMutI	CAGTG	2 cut(s)	58, 215
CciI	TCATGA	1 cut(s)	462
ClaI	ATCGAT	1 cut(s)	406
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	1 cut(s)	463
CviJI	RGCY	5 cut(s)	28, 229, 349, 365, 450
CviKI_1	RGCY	5 cut(s)	28, 229, 349, 365, 450
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	1 cut(s)	329
DpnI	GATC	2 cut(s)	147, 398
DpnII	GATC	2 cut(s)	145, 396
Ecl136II	GAGCTC	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	231
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	2 cut(s)	371, 387
EcoICRI	GAGCTC	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	192
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	1 cut(s)	466
FaiI	YATR	4 cut(s)	35, 127, 453, 464
FatI	CATG	1 cut(s)	462
FauI	CCCGC	1 cut(s)	268
Fnu4HI	GCNGC	3 cut(s)	26, 89, 213
FokI	GGATG	2 cut(s)	170, 346
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	3 cut(s)	26, 89, 213
FspBI	CTAG	1 cut(s)	258
GluI	GCNGC	3 cut(s)	26, 89, 213
Hin1II	CATG	1 cut(s)	466
HinfI	GANTC	4 cut(s)	170, 206, 279, 416
HphI	GGTGA	4 cut(s)	113, 181, 212, 290
Hpy188III	TCNNGA	4 cut(s)	53, 74, 149, 463
HpyCH4III	ACNGT	4 cut(s)	50, 62, 249, 266
HpyCH4V	TGCA	3 cut(s)	137, 215, 482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	371
HpyF3I	CTNAG	1 cut(s)	329
Hsp92II	CATG	1 cut(s)	466
Kzo9I	GATC	2 cut(s)	145, 396
LmnI	GCTCC	2 cut(s)	40, 234
LpnPI	CCDG	5 cut(s)	14, 87, 123, 162, 370
Lsp1109I	GCAGC	2 cut(s)	75, 199
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	1 cut(s)	258
MaeIII	GTNAC	2 cut(s)	260, 443
MalI	GATC	2 cut(s)	147, 398
MbiI	CCGCTC	1 cut(s)	43
MboI	GATC	2 cut(s)	145, 396
MboII	GAAGA	2 cut(s)	364, 380
MflI	RGATCY	1 cut(s)	396
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	2 cut(s)	233, 489
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	4 cut(s)	70, 171, 196, 280
MseI	TTAA	2 cut(s)	312, 493
MwoI	GCNNNNNNNGC	1 cut(s)	371
NdeII	GATC	2 cut(s)	145, 396
NlaIII	CATG	1 cut(s)	466
NmeAIII	GCCGAG	1 cut(s)	187
PagI	TCATGA	1 cut(s)	462
PfeI	GAWTC	4 cut(s)	170, 206, 279, 416
PflMI	CCANNNNNTGG	2 cut(s)	238, 307
PkrI	GCNGC	3 cut(s)	27, 90, 214
Psp124BI	GAGCTC	1 cut(s)	231
PsuI	RGATCY	1 cut(s)	396
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	2 cut(s)	312, 493
SatI	GCNGC	3 cut(s)	26, 89, 213
Sau3AI	GATC	2 cut(s)	145, 396
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	5 cut(s)	112, 198, 231, 351, 452
SfaNI	GCATC	1 cut(s)	148
Sse9I	AATT	2 cut(s)	233, 489
SsiI	CCGC	3 cut(s)	25, 43, 275
SspMI	CTAG	1 cut(s)	258
SstI	GAGCTC	1 cut(s)	231
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	4 cut(s)	50, 62, 249, 266
TaqI	TCGA	2 cut(s)	11, 406
TasI	AATT	2 cut(s)	233, 489
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	4 cut(s)	170, 206, 279, 416
Tru1I	TTAA	2 cut(s)	312, 493
Tru9I	TTAA	2 cut(s)	312, 493
TscAI	CASTG	2 cut(s)	65, 222
TseI	GCWGC	2 cut(s)	88, 212
TspDTI	ATGAA	4 cut(s)	350, 408, 443, 451
TspRI	CASTG	2 cut(s)	65, 222
Van91I	CCANNNNNTGG	2 cut(s)	238, 307
XapI	RAATTY	1 cut(s)	489
XspI	CTAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.