Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0011148

Physical Location & Seq

Genomic Coordinates Reverse (-)

4721909 .. 4726253

Gene Structure 4345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG065200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGTTCAATTGAATGTTGATAAGCGGCTGGTTATGTGGGAGCGGTACTGTCTTGACCACTGTTTTGAAGTTCCAGAGGGGTTTGTGCTGCCCAAAAGTGGTGAAACACCTGTTGATAGTTCTGTATGTCAAAATGCAATCTGTGATCCAGAAGTGGATGCCGAGTTGGATTCGTTGAGGAACAAACTCACCAAGGTTGGTGAGGAATCTGCTGCACTGAACCGAGAGCTCCAATTATTGGAACAACAGTCTGCTTCTAGTAACCGTTTATCTGCGCTTGTCAATGAGACATTGCAGTTATATGACCGAAACTCTTTTCACGAGATGTTCCAGGAGATGGTTAAAACATCATCACAACTTAGGATGAAAACAGCAAAGCTGAAGACCAGAAAGGCTGAAGAAGCGAAACAGAATAAGATAGATAAGATCTACAATCGATACAGAGATTCATCTGTGATGAATGATAGCAATGGTCTATCTGGTGCAAAGTTGGAAGATCTTCAAGAATTTTTAGACAATATGAAAACAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000444 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000818 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0008104 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034501 GO:0034502 GO:0034508 GO:0034613 GO:0034622 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0048285 GO:0051179 GO:0051276 GO:0051382 GO:0051383 GO:0051641 GO:0065003 GO:0065004 GO:0070013 GO:0070727 GO:0070925 GO:0071459 GO:0071824 GO:0071840 GO:0098687 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mis12

Protein Analysis

177

Amino Acids

20.3

Weight (kDa)

5.21

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mis12	PF05859	3 - 157	1.3e-22	Mis12 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35520
fragaria_vesca	FvH4_5g13000
malus_domestica	MD06G1208100.v1.1 MD14G1218500.v1.1
prunus_persica	Prupe.5G212600_v2.0.a1 Prupe.5G212600_v2.0.a1
pyrus_communis	pycom06g18590 pycom14g18110
rosa_chinensis	RchiOBHm_Chr7g0184161
rosa_laevigata	RLG00000004998
rosa_multiflora	Rmu_co8235265.1_g000001 Rmu_sc0012221.1_g000004
rosa_roxburghii	Rroxscaffold_3G00269840
rosa_rugosa	Rorug06G0463400 Rorug06G0463500
rosa_samantha	Rh7AG082400 Rh7BG064800 Rh7CG065200 Rh7DG064900
rosa_wichuraiana	Rw7G005310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	238, 337
AccBSI	CCGCTC	1 cut(s)	43
AciI	CCGC	2 cut(s)	25, 43
AclWI	GGATC	1 cut(s)	140
AcsI	RAATTY	1 cut(s)	506
AcuI	CTGAAG	2 cut(s)	401, 417
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	3 cut(s)	98, 238, 337
AgsI	TTSAA	4 cut(s)	8, 13, 68, 503
AjnI	CCWGG	1 cut(s)	330
AluBI	AGCT	2 cut(s)	229, 379
AluI	AGCT	2 cut(s)	229, 379
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	1 cut(s)	281
AlwI	GGATC	1 cut(s)	140
ApeKI	GCWGC	2 cut(s)	88, 212
ApoI	RAATTY	1 cut(s)	506
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
Asp700I	GAANNNNTTC	1 cut(s)	498
AspLEI	GCGC	1 cut(s)	277
AsuHPI	GGTGA	3 cut(s)	113, 181, 212
BanII	GRGCYC	1 cut(s)	231
BauI	CACGAG	1 cut(s)	320
BbsI	GAAGAC	1 cut(s)	389
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	2 cut(s)	75, 199
BccI	CCATC	1 cut(s)	331
BciT130I	CCWGG	1 cut(s)	332
BcoDI	GTCTC	1 cut(s)	281
BfaI	CTAG	1 cut(s)	258
BglII	AGATCT	2 cut(s)	426, 496
BisI	GCNGC	3 cut(s)	26, 89, 213
BlsI	GCNGC	3 cut(s)	27, 90, 214
Bme1390I	CCNGG	1 cut(s)	332
BmrFI	CCNGG	1 cut(s)	332
BmsI	GCATC	1 cut(s)	148
BpiI	GAAGAC	1 cut(s)	389
Bsa29I	ATCGAT	1 cut(s)	436
BsaJI	CCNNGG	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 238, 337
Bse3DI	GCAATG	2 cut(s)	290, 475
BseBI	CCWGG	1 cut(s)	332
BseCI	ATCGAT	1 cut(s)	436
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	2 cut(s)	163, 369
BseLI	CCNNNNNNNGG	3 cut(s)	98, 238, 337
BseMI	GCAATG	2 cut(s)	290, 475
BseXI	GCAGC	2 cut(s)	75, 199
BsgI	GTGCAG	1 cut(s)	198
BshVI	ATCGAT	1 cut(s)	436
BsiHKAI	GWGCWC	1 cut(s)	231
BslI	CCNNNNNNNGG	3 cut(s)	98, 238, 337
BsmAI	GTCTC	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	3 cut(s)	145, 426, 496
BspACI	CCGC	2 cut(s)	25, 43
BspDI	ATCGAT	1 cut(s)	436
BspPI	GGATC	1 cut(s)	140
BsrBI	CCGCTC	1 cut(s)	43
BsrDI	GCAATG	2 cut(s)	290, 475
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	3 cut(s)	145, 426, 496
BssSI	CACGAG	1 cut(s)	320
BssT1I	CCWWGG	1 cut(s)	192
Bst2BI	CACGAG	1 cut(s)	320
Bst2UI	CCWGG	1 cut(s)	332
Bst4CI	ACNGT	4 cut(s)	50, 62, 249, 266
BstDEI	CTNAG	1 cut(s)	359
BstF5I	GGATG	2 cut(s)	163, 369
BstHHI	GCGC	1 cut(s)	277
BstKTI	GATC	3 cut(s)	148, 429, 499
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	3 cut(s)	145, 426, 496
BstMWI	GCNNNNNNNGC	1 cut(s)	401
BstNI	CCWGG	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	330
BstV1I	GCAGC	2 cut(s)	75, 199
BstV2I	GAAGAC	1 cut(s)	389
BstX2I	RGATCY	2 cut(s)	426, 496
BstYI	RGATCY	2 cut(s)	426, 496
Bsu15I	ATCGAT	1 cut(s)	436
BsuTUI	ATCGAT	1 cut(s)	436
BtsCI	GGATG	2 cut(s)	163, 369
BtsIMutI	CAGTG	2 cut(s)	58, 215
CfoI	GCGC	1 cut(s)	277
ClaI	ATCGAT	1 cut(s)	436
Csp6I	GTAC	1 cut(s)	46
CviJI	RGCY	4 cut(s)	28, 229, 379, 395
CviKI_1	RGCY	4 cut(s)	28, 229, 379, 395
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	1 cut(s)	359
DpnI	GATC	3 cut(s)	147, 428, 498
DpnII	GATC	3 cut(s)	145, 426, 496
Ecl136II	GAGCTC	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	231
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	2 cut(s)	401, 417
EcoICRI	GAGCTC	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	330
EcoT14I	CCWWGG	1 cut(s)	192
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	192
FaiI	YATR	5 cut(s)	35, 127, 301, 303, 521
Fnu4HI	GCNGC	3 cut(s)	26, 89, 213
FokI	GGATG	2 cut(s)	170, 376
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	3 cut(s)	26, 89, 213
FspBI	CTAG	1 cut(s)	258
GlaI	GCGC	1 cut(s)	276
GluI	GCNGC	3 cut(s)	26, 89, 213
HhaI	GCGC	1 cut(s)	277
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HinfI	GANTC	3 cut(s)	170, 206, 446
HphI	GGTGA	3 cut(s)	113, 181, 212
Hpy188III	TCNNGA	5 cut(s)	53, 74, 149, 320, 503
HpyCH4III	ACNGT	4 cut(s)	50, 62, 249, 266
HpyCH4V	TGCA	4 cut(s)	137, 215, 295, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	401
HpyF3I	CTNAG	1 cut(s)	359
HspAI	GCGC	1 cut(s)	275
Kzo9I	GATC	3 cut(s)	145, 426, 496
LmnI	GCTCC	2 cut(s)	40, 234
LpnPI	CCDG	8 cut(s)	14, 87, 123, 162, 317, 344, 400, 465
Lsp1109I	GCAGC	2 cut(s)	75, 199
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	1 cut(s)	258
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	3 cut(s)	147, 428, 498
MbiI	CCGCTC	1 cut(s)	43
MboI	GATC	3 cut(s)	145, 426, 496
MboII	GAAGA	4 cut(s)	394, 410, 491, 506
MfeI	CAATTG	1 cut(s)	8
MflI	RGATCY	2 cut(s)	426, 496
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	3 cut(s)	8, 233, 506
MmeI	TCCRAC	2 cut(s)	147, 471
MnlI	CCTC	3 cut(s)	70, 171, 196
MroXI	GAANNNNTTC	1 cut(s)	498
MseI	TTAA	1 cut(s)	342
MspR9I	CCNGG	1 cut(s)	332
MunI	CAATTG	1 cut(s)	8
MvaI	CCWGG	1 cut(s)	332
MwoI	GCNNNNNNNGC	1 cut(s)	401
NdeII	GATC	3 cut(s)	145, 426, 496
NmeAIII	GCCGAG	1 cut(s)	187
PdmI	GAANNNNTTC	1 cut(s)	498
PfeI	GAWTC	3 cut(s)	170, 206, 446
PflMI	CCANNNNNTGG	2 cut(s)	238, 337
PfoI	TCCNGGA	1 cut(s)	330
PkrI	GCNGC	3 cut(s)	27, 90, 214
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	330
PsuI	RGATCY	2 cut(s)	426, 496
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	3 cut(s)	26, 89, 213
Sau3AI	GATC	3 cut(s)	145, 426, 496
ScrFI	CCNGG	1 cut(s)	332
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	4 cut(s)	112, 198, 231, 381
SfaNI	GCATC	1 cut(s)	148
Sse9I	AATT	3 cut(s)	8, 233, 506
SsiI	CCGC	2 cut(s)	25, 43
SspMI	CTAG	1 cut(s)	258
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	330
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	4 cut(s)	50, 62, 249, 266
TaqI	TCGA	1 cut(s)	436
TaqII	GACCGA	1 cut(s)	321
TasI	AATT	3 cut(s)	8, 233, 506
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	3 cut(s)	170, 206, 446
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	2 cut(s)	65, 222
TseI	GCWGC	2 cut(s)	88, 212
TspDTI	ATGAA	3 cut(s)	380, 438, 473
TspRI	CASTG	2 cut(s)	65, 222
Van91I	CCANNNNNTGG	2 cut(s)	238, 337
XapI	RAATTY	1 cut(s)	506
XmnI	GAANNNNTTC	1 cut(s)	498
XspI	CTAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.