Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8235265.1

Orthogroup ID

OG0011148

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 326

Gene Structure 326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8235265.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

atggaagggagcgaaagcgaggcggtgtttgattcggtgaacctgaatccgcagctgttcatcaacgaggtcatcaacaccgtcgacgatttggtcgacgatgcgttcgattacttccagcaggaagcatcgacctctttgaaagtcgaaggcactgacagagctcaagatctagccaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000444 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000818 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0008104 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034501 GO:0034502 GO:0034508 GO:0034613 GO:0034622 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0048285 GO:0051179 GO:0051276 GO:0051382 GO:0051383 GO:0051641 GO:0065003 GO:0065004 GO:0070013 GO:0070727 GO:0070925 GO:0071459 GO:0071824 GO:0071840 GO:0098687 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mis12

Protein Analysis

60

Amino Acids

6.67

Weight (kDa)

4.05

Isoelectric Point (pI)

27.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35520
fragaria_vesca	FvH4_5g13000
malus_domestica	MD06G1208100.v1.1 MD14G1218500.v1.1
prunus_persica	Prupe.5G212600_v2.0.a1 Prupe.5G212600_v2.0.a1
pyrus_communis	pycom06g18590 pycom14g18110
rosa_chinensis	RchiOBHm_Chr7g0184161
rosa_laevigata	RLG00000004998
rosa_multiflora	Rmu_co8235265.1_g000001 Rmu_sc0012221.1_g000004
rosa_roxburghii	Rroxscaffold_3G00269840
rosa_rugosa	Rorug06G0463400 Rorug06G0463500
rosa_samantha	Rh7AG082400 Rh7BG064800 Rh7CG065200 Rh7DG064900
rosa_wichuraiana	Rw7G005310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
AccI	GTMKAC	2 cut(s)	84, 96
AciI	CCGC	2 cut(s)	23, 50
AgsI	TTSAA	1 cut(s)	142
AluBI	AGCT	2 cut(s)	55, 164
AluI	AGCT	2 cut(s)	55, 164
Alw21I	GWGCWC	1 cut(s)	166
ApeKI	GCWGC	1 cut(s)	52
ArsI	GACNNNNNNTTYG	2 cut(s)	89, 121
AsuHPI	GGTGA	1 cut(s)	49
BanII	GRGCYC	1 cut(s)	166
Bbv12I	GWGCWC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	64
BfaI	CTAG	1 cut(s)	173
BglII	AGATCT	1 cut(s)	169
BisI	GCNGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	54
BmsI	GCATC	2 cut(s)	91, 137
BpuEI	CTTGAG	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	64
BsiHKAI	GWGCWC	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	1 cut(s)	169
BspACI	CCGC	2 cut(s)	23, 50
BssMI	GATC	1 cut(s)	169
Bst4CI	ACNGT	1 cut(s)	82
BstKTI	GATC	1 cut(s)	172
BstMBI	GATC	1 cut(s)	169
BstV1I	GCAGC	1 cut(s)	64
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BtsIMutI	CAGTG	1 cut(s)	153
CviJI	RGCY	3 cut(s)	55, 164, 176
CviKI_1	RGCY	3 cut(s)	55, 164, 176
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
Ecl136II	GAGCTC	1 cut(s)	164
Eco24I	GRGCYC	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	164
EcoICRI	GAGCTC	1 cut(s)	164
EcoT38I	GRGCYC	1 cut(s)	166
FblI	GTMKAC	2 cut(s)	84, 96
Fnu4HI	GCNGC	1 cut(s)	53
FriOI	GRGCYC	1 cut(s)	166
Fsp4HI	GCNGC	1 cut(s)	53
FspBI	CTAG	1 cut(s)	173
GluI	GCNGC	1 cut(s)	53
HincII	GTYRAC	2 cut(s)	85, 97
HindII	GTYRAC	2 cut(s)	85, 97
HinfI	GANTC	2 cut(s)	32, 46
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	3 cut(s)	40, 85, 97
Hpy188III	TCNNGA	1 cut(s)	167
Hpy8I	GTNNAC	3 cut(s)	40, 85, 97
Hpy99I	CGWCG	3 cut(s)	86, 89, 101
HpyAV	CCTTC	1 cut(s)	143
HpyCH4III	ACNGT	1 cut(s)	82
Kzo9I	GATC	1 cut(s)	169
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	3 cut(s)	56, 107, 131
Lsp1109I	GCAGC	1 cut(s)	64
LweI	GCATC	2 cut(s)	91, 137
MaeI	CTAG	1 cut(s)	173
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MflI	RGATCY	1 cut(s)	169
MhlI	GDGCHC	1 cut(s)	166
MnlI	CCTC	3 cut(s)	13, 61, 145
MspA1I	CMGCKG	1 cut(s)	55
NdeII	GATC	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	2 cut(s)	93, 105
PfeI	GAWTC	2 cut(s)	32, 46
PkrI	GCNGC	1 cut(s)	54
Psp124BI	GAGCTC	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	169
PvuII	CAGCTG	1 cut(s)	55
SacI	GAGCTC	1 cut(s)	166
SalI	GTCGAC	2 cut(s)	83, 95
SatI	GCNGC	1 cut(s)	53
Sau3AI	GATC	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	5 cut(s)	45, 57, 72, 137, 166
SfaNI	GCATC	2 cut(s)	91, 137
SgeI	CNNG	5 cut(s)	31, 55, 79, 130, 134
SgrDI	CGTCGACG	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
SsiI	CCGC	2 cut(s)	23, 50
SspMI	CTAG	1 cut(s)	173
SstI	GAGCTC	1 cut(s)	166
TaaI	ACNGT	1 cut(s)	82
TaqI	TCGA	5 cut(s)	84, 96, 108, 131, 147
TfiI	GAWTC	2 cut(s)	32, 46
TscAI	CASTG	1 cut(s)	160
TseI	GCWGC	1 cut(s)	52
TspDTI	ATGAA	1 cut(s)	49
TspRI	CASTG	1 cut(s)	160
XmiI	GTMKAC	2 cut(s)	84, 96
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.