Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006987

Physical Location & Seq

Genomic Coordinates Reverse (-)

7627138 .. 7634218

Gene Structure 7081 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g13510.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGGGAGAGGGAGAGTTGAGCTCAAGAGGATAGAGAATAAAATCAACAGGCAGGTCACTTTTGCCAAGAGAAGAAATGGCCTGCTCAAGAAAGCTTATGAGCTCTCAGTTCTCTGTGATGCTGAGGTTGCTCTCATTATTTTCTCTGGCCGTGGAAAGCTCTATGAGTTCTGCAGCAGCTTAAGCATGATGAAAACACTTGAAAAGTACCAAAGGTGCAGTTATGGTGCCCTGGAAGCCAACCAACCTGTAAACGAGACTCAGAACAGTTACCAGGAATATTTGAGGCTTAAAGCAAGAGTGGAGGTCCTCCAACGATCTCAGAGAAATCTTCTTGGAGAAGATTTGGGCCCACTGAACACGAAGGAGCTTGAGCAGCTTGAGCATCAACTAGAGTCATCCCTGAAGCATATTAGGTCAACAAAGACTCAGTTTATGCTGGACGAGCTTTCTGATCTTCAAAACAGGGAACAGATGCTTGTTGAAACTAACAAATCCTTGAGGAGGAAGCTGGAAGAAACTAATCTGCAAGGTGCTCCACTTCATCTGGCATGGGACGGTGGCTATGGCCAAAACAACATTCATGAGCACAATAGCCGTTTTCCTCCCCAGTCGCAAGGTTTCTTTCAGCAACTGCAAGGAAACAACAACTCCGCAATGCAAATGGGATACACACCATTGGGTTCAGATCATCATCATCATCAGCAGATGAATGCAGGAAATCCAGGCCAAAATGTGAATGGATTCATTCCTGGGTGGATGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0046983 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

256

Amino Acids

29.3

Weight (kDa)

8.91

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	4.5e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	82 - 172	3.5e-29	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006987)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g13510 FvH4_5g13510 FvH4_5g13510
malus_domestica	MD06G1204100.v1.1 MD06G1204300.v1.1 MD14G1215600.v1.1 MD16G1121900.v1.1
prunus_persica	Prupe.5G208400_v2.0.a1 Prupe.5G208400_v2.0.a1 Prupe.5G208400_v2.0.a1
pyrus_communis	pycom06g18250 pycom06g18260 pycom14g17840 pycom17g06530
rosa_chinensis	RchiOBHm_Chr7g0183521
rosa_laevigata	RLG00000005043
rosa_multiflora	Rmu_sc0003610.1_g000001 Rmu_sc0015926.1_g000005
rosa_roxburghii	Rroxscaffold_3G00270410
rosa_rugosa	Rorug06G0458200
rosa_samantha	Rh7AG059400 Rh7BG059200 Rh7CG061000 Rh7DG059600
rosa_wichuraiana	Rw7G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	43
AccB1I	GGYRCC	1 cut(s)	227
AciI	CCGC	1 cut(s)	654
AcoI	YGGCCR	2 cut(s)	148, 568
AcuI	CTGAAG	1 cut(s)	425
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	504
AflII	CTTAAG	1 cut(s)	181
AgsI	TTSAA	3 cut(s)	203, 461, 485
AjnI	CCWGG	4 cut(s)	231, 273, 724, 751
AjuI	GAANNNNNNNTTGG	2 cut(s)	564, 596
AluBI	AGCT	9 cut(s)	22, 95, 103, 160, 180, 370, 379, 448, 511
AluI	AGCT	9 cut(s)	22, 95, 103, 160, 180, 370, 379, 448, 511
Alw21I	GWGCWC	4 cut(s)	24, 105, 538, 591
Alw26I	GTCTC	1 cut(s)	251
AlwNI	CAGNNNCTG	1 cut(s)	634
AoxI	GGCC	5 cut(s)	79, 148, 349, 568, 727
ApaI	GGGCCC	1 cut(s)	353
ApeKI	GCWGC	3 cut(s)	174, 177, 376
Asp700I	GAANNNNTTC	1 cut(s)	743
AspS9I	GGNCC	3 cut(s)	307, 349, 350
AvaII	GGWCC	1 cut(s)	307
BaeGI	GKGCMC	2 cut(s)	232, 353
BalI	TGGCCA	1 cut(s)	570
BanI	GGYRCC	1 cut(s)	227
BanII	GRGCYC	3 cut(s)	24, 105, 353
Bbv12I	GWGCWC	4 cut(s)	24, 105, 538, 591
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	3 cut(s)	186, 189, 388
BceAI	ACGGC	2 cut(s)	135, 582
BciT130I	CCWGG	4 cut(s)	233, 275, 726, 753
BciVI	GTATCC	1 cut(s)	662
BcoDI	GTCTC	1 cut(s)	251
BfaI	CTAG	1 cut(s)	392
BfmI	CTRYAG	1 cut(s)	172
BfrI	CTTAAG	1 cut(s)	181
BfuAI	ACCTGC	1 cut(s)	43
BfuI	GTATCC	1 cut(s)	662
BisI	GCNGC	3 cut(s)	175, 178, 377
BlsI	GCNGC	3 cut(s)	176, 179, 378
Bme1390I	CCNGG	4 cut(s)	233, 275, 726, 753
Bme18I	GGWCC	1 cut(s)	307
BmgT120I	GGNCC	3 cut(s)	307, 349, 350
BmiI	GGNNCC	2 cut(s)	229, 351
BmrFI	CCNGG	4 cut(s)	233, 275, 726, 753
BmrI	ACTGGG	1 cut(s)	604
BmsI	GCATC	4 cut(s)	109, 394, 465, 750
BmuI	ACTGGG	1 cut(s)	604
BplI	GAGNNNNNCTC	1 cut(s)	38
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	5 cut(s)	8, 71, 392, 401, 520
BsaBI	GATNNNNATC	1 cut(s)	693
BsaJI	CCNNGG	3 cut(s)	151, 231, 752
BsaXI	ACNNNNNCTCC	2 cut(s)	635, 665
Bsc4I	CCNNNNNNNGG	1 cut(s)	504
Bse1I	ACTGG	1 cut(s)	610
Bse3DI	GCAATG	1 cut(s)	663
Bse8I	GATNNNNATC	1 cut(s)	693
BseBI	CCWGG	4 cut(s)	233, 275, 726, 753
BseDI	CCNNGG	3 cut(s)	151, 231, 752
BseGI	GGATG	2 cut(s)	398, 765
BseJI	GATNNNNATC	1 cut(s)	693
BseLI	CCNNNNNNNGG	1 cut(s)	504
BseMI	GCAATG	1 cut(s)	663
BseMII	CTCAG	5 cut(s)	114, 120, 275, 335, 443
BseNI	ACTGG	1 cut(s)	610
BseRI	GAGGAG	1 cut(s)	517
BseSI	GKGCMC	2 cut(s)	232, 353
BseXI	GCAGC	3 cut(s)	186, 189, 388
BsgI	GTGCAG	1 cut(s)	238
BshFI	GGCC	5 cut(s)	81, 150, 351, 570, 729
BshNI	GGYRCC	1 cut(s)	227
BsiHKAI	GWGCWC	4 cut(s)	24, 105, 538, 591
BslFI	GGGAC	1 cut(s)	569
BslI	CCNNNNNNNGG	1 cut(s)	504
BsmAI	GTCTC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	569
BsmI	GAATGC	1 cut(s)	718
BsnI	GGCC	5 cut(s)	81, 150, 351, 570, 729
Bsp120I	GGGCCC	1 cut(s)	349
Bsp1286I	GDGCHC	6 cut(s)	24, 105, 232, 353, 538, 591
Bsp143I	GATC	3 cut(s)	317, 454, 688
BspACI	CCGC	1 cut(s)	654
BspANI	GGCC	5 cut(s)	81, 150, 351, 570, 729
BspCNI	CTCAG	5 cut(s)	115, 119, 274, 334, 442
BspHI	TCATGA	1 cut(s)	583
BspLI	GGNNCC	2 cut(s)	229, 351
BspMAI	CTGCAG	1 cut(s)	176
BspMI	ACCTGC	1 cut(s)	43
BspT107I	GGYRCC	1 cut(s)	227
BspTI	CTTAAG	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	663
BsrI	ACTGG	1 cut(s)	610
BssECI	CCNNGG	3 cut(s)	151, 231, 752
BssMI	GATC	3 cut(s)	317, 454, 688
Bst2UI	CCWGG	4 cut(s)	233, 275, 726, 753
Bst4CI	ACNGT	2 cut(s)	269, 560
BstAFI	CTTAAG	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	83
BstDEI	CTNAG	5 cut(s)	106, 123, 261, 321, 429
BstDSI	CCRYGG	1 cut(s)	151
BstENI	CCTNNNNNAGG	1 cut(s)	502
BstF5I	GGATG	2 cut(s)	398, 765
BstKTI	GATC	3 cut(s)	320, 457, 691
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	3 cut(s)	317, 454, 688
BstMWI	GCNNNNNNNGC	6 cut(s)	128, 183, 236, 376, 382, 445
BstNI	CCWGG	4 cut(s)	233, 275, 726, 753
BstSCI	CCNGG	4 cut(s)	231, 273, 724, 751
BstSFI	CTRYAG	1 cut(s)	172
BstSLI	GKGCMC	2 cut(s)	232, 353
BstV1I	GCAGC	3 cut(s)	186, 189, 388
BsuI	GTATCC	1 cut(s)	662
BsuRI	GGCC	5 cut(s)	81, 150, 351, 570, 729
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	2 cut(s)	398, 765
BtsIMutI	CAGTG	1 cut(s)	353
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	83
CaiI	CAGNNNCTG	1 cut(s)	634
CciI	TCATGA	1 cut(s)	583
Cfr13I	GGNCC	3 cut(s)	307, 349, 350
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	3 cut(s)	187, 552, 584
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	5 cut(s)	106, 123, 261, 321, 429
DpnI	GATC	3 cut(s)	319, 456, 690
DpnII	GATC	3 cut(s)	317, 454, 688
EaeI	YGGCCR	2 cut(s)	148, 568
Ecl136II	GAGCTC	2 cut(s)	22, 103
Eco24I	GRGCYC	3 cut(s)	24, 105, 353
Eco47I	GGWCC	1 cut(s)	307
Eco53kI	GAGCTC	2 cut(s)	22, 103
Eco57I	CTGAAG	1 cut(s)	425
EcoICRI	GAGCTC	2 cut(s)	22, 103
EcoNI	CCTNNNNNAGG	1 cut(s)	502
EcoO109I	RGGNCCY	1 cut(s)	307
EcoRII	CCWGG	4 cut(s)	231, 273, 724, 751
EcoT38I	GRGCYC	3 cut(s)	24, 105, 353
FaeI	CATG	3 cut(s)	190, 555, 587
FaiI	YATR	9 cut(s)	99, 165, 188, 225, 411, 437, 553, 567, 585
FaqI	GGGAC	1 cut(s)	569
FatI	CATG	3 cut(s)	186, 551, 583
Fnu4HI	GCNGC	3 cut(s)	175, 178, 377
FokI	GGATG	1 cut(s)	385
FriOI	GRGCYC	3 cut(s)	24, 105, 353
Fsp4HI	GCNGC	3 cut(s)	175, 178, 377
FspBI	CTAG	1 cut(s)	392
GluI	GCNGC	3 cut(s)	175, 178, 377
HaeIII	GGCC	5 cut(s)	81, 150, 351, 570, 729
Hin1II	CATG	3 cut(s)	190, 555, 587
HincII	GTYRAC	1 cut(s)	420
HindII	GTYRAC	1 cut(s)	420
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	4 cut(s)	259, 395, 427, 744
Hpy166II	GTNNAC	2 cut(s)	253, 420
Hpy188I	TCNGA	4 cut(s)	264, 324, 454, 688
Hpy188III	TCNNGA	3 cut(s)	25, 88, 584
Hpy8I	GTNNAC	2 cut(s)	253, 420
HpyAV	CCTTC	1 cut(s)	358
HpyCH4III	ACNGT	2 cut(s)	269, 560
HpyCH4V	TGCA	6 cut(s)	174, 219, 529, 637, 661, 716
HpyF10VI	GCNNNNNNNGC	6 cut(s)	128, 183, 236, 376, 382, 445
HpyF3I	CTNAG	5 cut(s)	106, 123, 261, 321, 429
Hsp92II	CATG	3 cut(s)	190, 555, 587
Kzo9I	GATC	3 cut(s)	317, 454, 688
LmnI	GCTCC	2 cut(s)	367, 541
Lsp1109I	GCAGC	3 cut(s)	186, 189, 388
LweI	GCATC	4 cut(s)	109, 394, 465, 750
MaeI	CTAG	1 cut(s)	392
MaeIII	GTNAC	2 cut(s)	55, 269
MalI	GATC	3 cut(s)	319, 456, 690
MboI	GATC	3 cut(s)	317, 454, 688
MboII	GAAGA	5 cut(s)	84, 323, 353, 449, 527
MhlI	GDGCHC	6 cut(s)	24, 105, 232, 353, 538, 591
MlsI	TGGCCA	1 cut(s)	570
MluNI	TGGCCA	1 cut(s)	570
MlyI	GAGTC	3 cut(s)	253, 404, 421
MmeI	TCCRAC	1 cut(s)	337
MnlI	CCTC	8 cut(s)	21, 118, 279, 298, 320, 495, 498, 615
Mox20I	TGGCCA	1 cut(s)	570
MroXI	GAANNNNTTC	1 cut(s)	743
MscI	TGGCCA	1 cut(s)	570
MseI	TTAA	2 cut(s)	182, 291
Msp20I	TGGCCA	1 cut(s)	570
MspCI	CTTAAG	1 cut(s)	181
MspR9I	CCNGG	4 cut(s)	233, 275, 726, 753
Mva1269I	GAATGC	1 cut(s)	718
MvaI	CCWGG	4 cut(s)	233, 275, 726, 753
MwoI	GCNNNNNNNGC	6 cut(s)	128, 183, 236, 376, 382, 445
NdeII	GATC	3 cut(s)	317, 454, 688
NlaIII	CATG	3 cut(s)	190, 555, 587
NlaIV	GGNNCC	2 cut(s)	229, 351
NmuCI	GTSAC	1 cut(s)	55
PagI	TCATGA	1 cut(s)	583
PctI	GAATGC	1 cut(s)	718
PdmI	GAANNNNTTC	1 cut(s)	743
PfeI	GAWTC	1 cut(s)	744
PkrI	GCNGC	3 cut(s)	176, 179, 378
PleI	GAGTC	3 cut(s)	253, 403, 421
PpsI	GAGTC	3 cut(s)	253, 403, 421
PpuMI	RGGWCCY	1 cut(s)	307
Psp124BI	GAGCTC	2 cut(s)	24, 105
Psp5II	RGGWCCY	1 cut(s)	307
Psp6I	CCWGG	4 cut(s)	231, 273, 724, 751
PspGI	CCWGG	4 cut(s)	231, 273, 724, 751
PspN4I	GGNNCC	2 cut(s)	229, 351
PspOMI	GGGCCC	1 cut(s)	349
PspPI	GGNCC	3 cut(s)	307, 349, 350
PspPPI	RGGWCCY	1 cut(s)	307
PstI	CTGCAG	1 cut(s)	176
PstNI	CAGNNNCTG	1 cut(s)	634
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SacI	GAGCTC	2 cut(s)	24, 105
SaqAI	TTAA	2 cut(s)	182, 291
SatI	GCNGC	3 cut(s)	175, 178, 377
Sau3AI	GATC	3 cut(s)	317, 454, 688
Sau96I	GGNCC	3 cut(s)	307, 349, 350
SchI	GAGTC	3 cut(s)	253, 404, 421
ScrFI	CCNGG	4 cut(s)	233, 275, 726, 753
SduI	GDGCHC	6 cut(s)	24, 105, 232, 353, 538, 591
SfaNI	GCATC	4 cut(s)	109, 394, 465, 750
SfcI	CTRYAG	1 cut(s)	172
SinI	GGWCC	1 cut(s)	307
SmlI	CTYRAG	6 cut(s)	23, 86, 181, 371, 380, 499
SmoI	CTYRAG	6 cut(s)	23, 86, 181, 371, 380, 499
SsiI	CCGC	1 cut(s)	654
SspI	AATATT	1 cut(s)	281
SspMI	CTAG	1 cut(s)	392
SstI	GAGCTC	2 cut(s)	24, 105
StyD4I	CCNGG	4 cut(s)	231, 273, 724, 751
TaaI	ACNGT	2 cut(s)	269, 560
TfiI	GAWTC	1 cut(s)	744
Tru1I	TTAA	2 cut(s)	182, 291
Tru9I	TTAA	2 cut(s)	182, 291
TscAI	CASTG	1 cut(s)	360
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	174, 177, 376
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	5 cut(s)	206, 533, 572, 725, 736
TspRI	CASTG	1 cut(s)	360
Vha464I	CTTAAG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	307
XagI	CCTNNNNNAGG	1 cut(s)	502
XcmI	CCANNNNNNNNNTGG	1 cut(s)	737
XmnI	GAANNNNTTC	1 cut(s)	743
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.