Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015926.1

Orthogroup ID

OG0006987

Physical Location & Seq

Genomic Coordinates Reverse (-)

15623 .. 15975

Gene Structure 353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015926.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

atgcaacagctggaagaaactaatctgcaaggtgctccacttcgtctggcatgggacggtggctatggccagaacaacattcatcagcacaacaaccgtcttcctccccagtcgcaaggtttgtttcagccactgcaaggaaacaacacctccgctttgcaaatcggatacactccgctaagctcagatcatcatcaccagatgaatgcaggaaatccaggccaaaatgtcaatggattcattcctgggtggatgctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0046983 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

86

Amino Acids

9.5

Weight (kDa)

6.13

Isoelectric Point (pI)

52.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006987)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g13510 FvH4_5g13510 FvH4_5g13510
malus_domestica	MD06G1204100.v1.1 MD06G1204300.v1.1 MD14G1215600.v1.1 MD16G1121900.v1.1
prunus_persica	Prupe.5G208400_v2.0.a1 Prupe.5G208400_v2.0.a1 Prupe.5G208400_v2.0.a1
pyrus_communis	pycom06g18250 pycom06g18260 pycom14g17840 pycom17g06530
rosa_chinensis	RchiOBHm_Chr7g0183521
rosa_laevigata	RLG00000005043
rosa_multiflora	Rmu_sc0003610.1_g000001 Rmu_sc0015926.1_g000005
rosa_roxburghii	Rroxscaffold_3G00270410
rosa_rugosa	Rorug06G0458200
rosa_samantha	Rh7AG059400 Rh7BG059200 Rh7CG061000 Rh7DG059600
rosa_wichuraiana	Rw7G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	153, 176
AcoI	YGGCCR	1 cut(s)	67
AfiI	CCNNNNNNNGG	1 cut(s)	137
AjnI	CCWGG	2 cut(s)	217, 244
AluBI	AGCT	2 cut(s)	10, 183
AluI	AGCT	2 cut(s)	10, 183
Alw21I	GWGCWC	1 cut(s)	37
AlwNI	CAGNNNCTG	1 cut(s)	133
AoxI	GGCC	2 cut(s)	67, 220
AsuHPI	GGTGA	1 cut(s)	188
BalI	TGGCCA	1 cut(s)	69
BbsI	GAAGAC	1 cut(s)	92
Bbv12I	GWGCWC	1 cut(s)	37
BciT130I	CCWGG	2 cut(s)	219, 246
BciVI	GTATCC	1 cut(s)	161
BfuI	GTATCC	1 cut(s)	161
BlpI	GCTNAGC	1 cut(s)	179
Bme1390I	CCNGG	2 cut(s)	219, 246
BmrFI	CCNGG	2 cut(s)	219, 246
BmrI	ACTGGG	1 cut(s)	103
BmsI	GCATC	1 cut(s)	243
BmuI	ACTGGG	1 cut(s)	103
BpiI	GAAGAC	1 cut(s)	92
Bpu1102I	GCTNAGC	1 cut(s)	179
BsaBI	GATNNNNATC	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	245
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	109
Bse8I	GATNNNNATC	1 cut(s)	192
BseBI	CCWGG	2 cut(s)	219, 246
BseDI	CCNNGG	1 cut(s)	245
BseGI	GGATG	1 cut(s)	258
BseJI	GATNNNNATC	1 cut(s)	192
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	1 cut(s)	109
BshFI	GGCC	2 cut(s)	69, 222
BsiHKAI	GWGCWC	1 cut(s)	37
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	68
BsmI	GAATGC	1 cut(s)	211
BsnI	GGCC	2 cut(s)	69, 222
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	1 cut(s)	187
Bsp1720I	GCTNAGC	1 cut(s)	179
BspACI	CCGC	2 cut(s)	153, 176
BspANI	GGCC	2 cut(s)	69, 222
BspCNI	CTCAG	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	245
BssMI	GATC	1 cut(s)	187
Bst2UI	CCWGG	2 cut(s)	219, 246
Bst4CI	ACNGT	2 cut(s)	59, 98
BstDEI	CTNAG	2 cut(s)	179, 184
BstF5I	GGATG	1 cut(s)	258
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstNI	CCWGG	2 cut(s)	219, 246
BstSCI	CCNGG	2 cut(s)	217, 244
BstV2I	GAAGAC	1 cut(s)	92
BsuI	GTATCC	1 cut(s)	161
BsuRI	GGCC	2 cut(s)	69, 222
BtsCI	GGATG	1 cut(s)	258
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	1 cut(s)	131
CaiI	CAGNNNCTG	1 cut(s)	133
CviAII	CATG	1 cut(s)	51
CviJI	RGCY	6 cut(s)	10, 63, 69, 130, 183, 222
CviKI_1	RGCY	6 cut(s)	10, 63, 69, 130, 183, 222
DdeI	CTNAG	2 cut(s)	179, 184
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
EaeI	YGGCCR	1 cut(s)	67
EcoRII	CCWGG	2 cut(s)	217, 244
FaeI	CATG	1 cut(s)	54
FaiI	YATR	2 cut(s)	52, 66
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	1 cut(s)	50
HaeIII	GGCC	2 cut(s)	69, 222
Hin1II	CATG	1 cut(s)	54
HinfI	GANTC	1 cut(s)	237
HphI	GGTGA	1 cut(s)	188
Hpy188I	TCNGA	2 cut(s)	167, 187
HpyCH4III	ACNGT	2 cut(s)	59, 98
HpyCH4V	TGCA	5 cut(s)	4, 28, 136, 160, 209
HpyF3I	CTNAG	2 cut(s)	179, 184
Hsp92II	CATG	1 cut(s)	54
Kzo9I	GATC	1 cut(s)	187
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	8 cut(s)	32, 83, 122, 195, 204, 212, 231, 231
LweI	GCATC	1 cut(s)	243
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	2 cut(s)	26, 92
MhlI	GDGCHC	1 cut(s)	37
MlsI	TGGCCA	1 cut(s)	69
MluNI	TGGCCA	1 cut(s)	69
MnlI	CCTC	2 cut(s)	114, 160
Mox20I	TGGCCA	1 cut(s)	69
MscI	TGGCCA	1 cut(s)	69
Msp20I	TGGCCA	1 cut(s)	69
MspA1I	CMGCKG	1 cut(s)	10
MspR9I	CCNGG	2 cut(s)	219, 246
Mva1269I	GAATGC	1 cut(s)	211
MvaI	CCWGG	2 cut(s)	219, 246
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	1 cut(s)	54
PctI	GAATGC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	237
Psp6I	CCWGG	2 cut(s)	217, 244
PspGI	CCWGG	2 cut(s)	217, 244
PstNI	CAGNNNCTG	1 cut(s)	133
PvuII	CAGCTG	1 cut(s)	10
Sau3AI	GATC	1 cut(s)	187
ScrFI	CCNGG	2 cut(s)	219, 246
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	5 cut(s)	12, 34, 121, 152, 185
SfaNI	GCATC	1 cut(s)	243
SsiI	CCGC	2 cut(s)	153, 176
StyD4I	CCNGG	2 cut(s)	217, 244
TaaI	ACNGT	2 cut(s)	59, 98
TfiI	GAWTC	1 cut(s)	237
TscAI	CASTG	1 cut(s)	138
TspDTI	ATGAA	3 cut(s)	71, 218, 229
TspRI	CASTG	1 cut(s)	138
XcmI	CCANNNNNNNNNTGG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.