Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0006987

Physical Location & Seq

Genomic Coordinates Forward (+)

4552676 .. 4559517

Gene Structure 6842 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG059600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGGGAGAGGAAGAGTTGAGCTCAAGAGAATAGAGAATAAAATCAACAGGCAAGTCACTTTTGCCAAGAGAAGAAATGGCCTGCTCAAGAAAGCTTATGAGCTCTCAGTTCTCTGTGATGCTGAGGTTGCCCTCATTATTTTCTCTGGCCGTGGAAAGCTCTATGAGTTCTGCAGCAGCTTAAGCATGATGAAAACGCTGGAAAAGTACCATAGGTGCAATTATGGTGCCCTCGAAGCCAACCAACCTGTAAACGAGACTCAGAACAGTTATCAGGAATATTTGAAGCTTAAAGCAAGAGTGGAGGTCCTCCAACGATCTCAGAGAAACCTTCTTGGGGAAGATTTGGGCCCACTGAACACGAAGGAGCTTGAGCAGCTTGAGCATCAACTAGAGTCATCCCTGAAGCATATTAGGTCAACAAAGACTCAGTTTATGCTGGATGAGCTTTCTGATCTCCAAAACAGGGAACAAATGCTTGTTGAAACTAATAAATCCTTAAGGAGGAAGCTGGAAGAAACTAATCTGCAAGGTGCTCCACTTCGTCTGGCATGGGACGGTGGCTATGGCCAGAACAACATTCATCAGCACAACAACCGTCTTCCTCCCCAGTCGCAAGGTTTGTTTCAGCCACTGCAAGGAAACAACACCTCCGCTTTGCAAATCGGATACACTCCGCTGAGCTCAGATCATCATCACCAGATGAATGCAGGAAATCCAGGCCAAAATGTCAATGGATTCATTCCTGGGTGGATGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0046983 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

253

Amino Acids

28.97

Weight (kDa)

9.2

Isoelectric Point (pI)

44.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	4.4e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	82 - 172	2.4e-29	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006987)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g13510 FvH4_5g13510 FvH4_5g13510
malus_domestica	MD06G1204100.v1.1 MD06G1204300.v1.1 MD14G1215600.v1.1 MD16G1121900.v1.1
prunus_persica	Prupe.5G208400_v2.0.a1 Prupe.5G208400_v2.0.a1 Prupe.5G208400_v2.0.a1
pyrus_communis	pycom06g18250 pycom06g18260 pycom14g17840 pycom17g06530
rosa_chinensis	RchiOBHm_Chr7g0183521
rosa_laevigata	RLG00000005043
rosa_multiflora	Rmu_sc0003610.1_g000001 Rmu_sc0015926.1_g000005
rosa_roxburghii	Rroxscaffold_3G00270410
rosa_rugosa	Rorug06G0458200
rosa_samantha	Rh7AG059400 Rh7BG059200 Rh7CG061000 Rh7DG059600
rosa_wichuraiana	Rw7G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	227
AciI	CCGC	2 cut(s)	654, 677
AcoI	YGGCCR	2 cut(s)	148, 568
AcuI	CTGAAG	1 cut(s)	425
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	4 cut(s)	337, 466, 504, 638
AflII	CTTAAG	2 cut(s)	181, 499
AgsI	TTSAA	2 cut(s)	286, 485
AjnI	CCWGG	2 cut(s)	718, 745
Alw21I	GWGCWC	4 cut(s)	24, 105, 538, 686
Alw26I	GTCTC	1 cut(s)	251
AlwNI	CAGNNNCTG	1 cut(s)	634
AoxI	GGCC	5 cut(s)	79, 148, 349, 568, 721
ApaI	GGGCCC	1 cut(s)	353
ApeKI	GCWGC	3 cut(s)	174, 177, 376
AspS9I	GGNCC	3 cut(s)	307, 349, 350
AsuHPI	GGTGA	1 cut(s)	689
AvaII	GGWCC	1 cut(s)	307
BaeGI	GKGCMC	2 cut(s)	232, 353
BalI	TGGCCA	1 cut(s)	570
BanI	GGYRCC	1 cut(s)	227
BanII	GRGCYC	4 cut(s)	24, 105, 353, 686
BbsI	GAAGAC	1 cut(s)	593
Bbv12I	GWGCWC	4 cut(s)	24, 105, 538, 686
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	3 cut(s)	186, 189, 388
BceAI	ACGGC	1 cut(s)	135
BciT130I	CCWGG	2 cut(s)	720, 747
BciVI	GTATCC	1 cut(s)	662
BcoDI	GTCTC	1 cut(s)	251
BfaI	CTAG	1 cut(s)	392
BfmI	CTRYAG	1 cut(s)	172
BfrI	CTTAAG	2 cut(s)	181, 499
BfuI	GTATCC	1 cut(s)	662
BisI	GCNGC	3 cut(s)	175, 178, 377
BlpI	GCTNAGC	1 cut(s)	680
BlsI	GCNGC	3 cut(s)	176, 179, 378
Bme1390I	CCNGG	2 cut(s)	720, 747
Bme18I	GGWCC	1 cut(s)	307
BmgT120I	GGNCC	3 cut(s)	307, 349, 350
BmiI	GGNNCC	2 cut(s)	229, 351
BmrFI	CCNGG	2 cut(s)	720, 747
BmrI	ACTGGG	1 cut(s)	604
BmsI	GCATC	3 cut(s)	109, 394, 744
BmuI	ACTGGG	1 cut(s)	604
BpiI	GAAGAC	1 cut(s)	593
BplI	GAGNNNNNCTC	1 cut(s)	38
Bpu10I	CCTNAGC	1 cut(s)	123
Bpu1102I	GCTNAGC	1 cut(s)	680
BpuEI	CTTGAG	4 cut(s)	8, 71, 392, 401
BsaBI	GATNNNNATC	1 cut(s)	693
BsaJI	CCNNGG	2 cut(s)	151, 746
BsaXI	ACNNNNNCTCC	2 cut(s)	635, 665
Bsc4I	CCNNNNNNNGG	4 cut(s)	337, 466, 504, 638
Bse1I	ACTGG	1 cut(s)	610
Bse8I	GATNNNNATC	1 cut(s)	693
BseBI	CCWGG	2 cut(s)	720, 747
BseDI	CCNNGG	2 cut(s)	151, 746
BseGI	GGATG	3 cut(s)	398, 448, 759
BseJI	GATNNNNATC	1 cut(s)	693
BseLI	CCNNNNNNNGG	4 cut(s)	337, 466, 504, 638
BseMII	CTCAG	7 cut(s)	114, 120, 275, 335, 443, 671, 699
BseNI	ACTGG	1 cut(s)	610
BseSI	GKGCMC	2 cut(s)	232, 353
BseXI	GCAGC	3 cut(s)	186, 189, 388
BshFI	GGCC	5 cut(s)	81, 150, 351, 570, 723
BshNI	GGYRCC	1 cut(s)	227
BsiHKAI	GWGCWC	4 cut(s)	24, 105, 538, 686
BslFI	GGGAC	1 cut(s)	569
BslI	CCNNNNNNNGG	4 cut(s)	337, 466, 504, 638
BsmAI	GTCTC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	569
BsmI	GAATGC	1 cut(s)	712
BsnI	GGCC	5 cut(s)	81, 150, 351, 570, 723
Bsp120I	GGGCCC	1 cut(s)	349
Bsp1286I	GDGCHC	6 cut(s)	24, 105, 232, 353, 538, 686
Bsp143I	GATC	3 cut(s)	317, 454, 688
Bsp1720I	GCTNAGC	1 cut(s)	680
BspACI	CCGC	2 cut(s)	654, 677
BspANI	GGCC	5 cut(s)	81, 150, 351, 570, 723
BspCNI	CTCAG	7 cut(s)	115, 119, 274, 334, 442, 672, 698
BspLI	GGNNCC	2 cut(s)	229, 351
BspMAI	CTGCAG	1 cut(s)	176
BspT107I	GGYRCC	1 cut(s)	227
BspTI	CTTAAG	2 cut(s)	181, 499
BsrI	ACTGG	1 cut(s)	610
BssECI	CCNNGG	2 cut(s)	151, 746
BssMI	GATC	3 cut(s)	317, 454, 688
Bst2UI	CCWGG	2 cut(s)	720, 747
Bst4CI	ACNGT	3 cut(s)	269, 560, 599
Bst6I	CTCTTC	1 cut(s)	7
BstAFI	CTTAAG	2 cut(s)	181, 499
BstC8I	GCNNGC	1 cut(s)	83
BstDEI	CTNAG	7 cut(s)	106, 123, 261, 321, 429, 680, 685
BstDSI	CCRYGG	1 cut(s)	151
BstENI	CCTNNNNNAGG	1 cut(s)	502
BstF5I	GGATG	3 cut(s)	398, 448, 759
BstKTI	GATC	3 cut(s)	320, 457, 691
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	3 cut(s)	317, 454, 688
BstMWI	GCNNNNNNNGC	6 cut(s)	128, 183, 236, 376, 382, 445
BstNI	CCWGG	2 cut(s)	720, 747
BstSCI	CCNGG	2 cut(s)	718, 745
BstSFI	CTRYAG	1 cut(s)	172
BstSLI	GKGCMC	2 cut(s)	232, 353
BstV1I	GCAGC	3 cut(s)	186, 189, 388
BstV2I	GAAGAC	1 cut(s)	593
BsuI	GTATCC	1 cut(s)	662
BsuRI	GGCC	5 cut(s)	81, 150, 351, 570, 723
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	3 cut(s)	398, 448, 759
BtsI	GCAGTG	1 cut(s)	632
BtsIMutI	CAGTG	2 cut(s)	353, 632
Cac8I	GCNNGC	1 cut(s)	83
CaiI	CAGNNNCTG	1 cut(s)	634
Cfr13I	GGNCC	3 cut(s)	307, 349, 350
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	2 cut(s)	187, 552
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	7 cut(s)	106, 123, 261, 321, 429, 680, 685
DpnI	GATC	3 cut(s)	319, 456, 690
DpnII	GATC	3 cut(s)	317, 454, 688
EaeI	YGGCCR	2 cut(s)	148, 568
Eam1104I	CTCTTC	1 cut(s)	7
EarI	CTCTTC	1 cut(s)	7
Ecl136II	GAGCTC	3 cut(s)	22, 103, 684
Eco24I	GRGCYC	4 cut(s)	24, 105, 353, 686
Eco47I	GGWCC	1 cut(s)	307
Eco53kI	GAGCTC	3 cut(s)	22, 103, 684
Eco57I	CTGAAG	1 cut(s)	425
EcoICRI	GAGCTC	3 cut(s)	22, 103, 684
EcoNI	CCTNNNNNAGG	1 cut(s)	502
EcoO109I	RGGNCCY	1 cut(s)	307
EcoRII	CCWGG	2 cut(s)	718, 745
EcoT38I	GRGCYC	4 cut(s)	24, 105, 353, 686
FaeI	CATG	2 cut(s)	190, 555
FaiI	YATR	9 cut(s)	99, 165, 188, 213, 225, 411, 437, 553, 567
FaqI	GGGAC	1 cut(s)	569
FatI	CATG	2 cut(s)	186, 551
Fnu4HI	GCNGC	3 cut(s)	175, 178, 377
FokI	GGATG	2 cut(s)	385, 455
FriOI	GRGCYC	4 cut(s)	24, 105, 353, 686
Fsp4HI	GCNGC	3 cut(s)	175, 178, 377
FspBI	CTAG	1 cut(s)	392
GluI	GCNGC	3 cut(s)	175, 178, 377
HaeIII	GGCC	5 cut(s)	81, 150, 351, 570, 723
Hin1II	CATG	2 cut(s)	190, 555
HincII	GTYRAC	1 cut(s)	420
HindII	GTYRAC	1 cut(s)	420
HindIII	AAGCTT	2 cut(s)	93, 287
HinfI	GANTC	4 cut(s)	259, 395, 427, 738
HphI	GGTGA	1 cut(s)	689
Hpy166II	GTNNAC	2 cut(s)	253, 420
Hpy188I	TCNGA	5 cut(s)	264, 324, 454, 668, 688
Hpy188III	TCNNGA	3 cut(s)	25, 88, 275
Hpy8I	GTNNAC	2 cut(s)	253, 420
HpyAV	CCTTC	2 cut(s)	341, 358
HpyCH4III	ACNGT	3 cut(s)	269, 560, 599
HpyCH4V	TGCA	6 cut(s)	174, 219, 529, 637, 661, 710
HpyF10VI	GCNNNNNNNGC	6 cut(s)	128, 183, 236, 376, 382, 445
HpyF3I	CTNAG	7 cut(s)	106, 123, 261, 321, 429, 680, 685
Hsp92II	CATG	2 cut(s)	190, 555
Kzo9I	GATC	3 cut(s)	317, 454, 688
LmnI	GCTCC	2 cut(s)	367, 541
Lsp1109I	GCAGC	3 cut(s)	186, 189, 388
LweI	GCATC	3 cut(s)	109, 394, 744
MaeI	CTAG	1 cut(s)	392
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	3 cut(s)	319, 456, 690
MboI	GATC	3 cut(s)	317, 454, 688
MboII	GAAGA	5 cut(s)	24, 84, 353, 527, 593
MhlI	GDGCHC	6 cut(s)	24, 105, 232, 353, 538, 686
MlsI	TGGCCA	1 cut(s)	570
MluCI	AATT	1 cut(s)	220
MluNI	TGGCCA	1 cut(s)	570
MlyI	GAGTC	3 cut(s)	253, 404, 421
MmeI	TCCRAC	1 cut(s)	337
MnlI	CCTC	8 cut(s)	118, 143, 242, 298, 320, 498, 615, 661
Mox20I	TGGCCA	1 cut(s)	570
MscI	TGGCCA	1 cut(s)	570
MseI	TTAA	3 cut(s)	182, 291, 500
Msp20I	TGGCCA	1 cut(s)	570
MspA1I	CMGCKG	1 cut(s)	679
MspCI	CTTAAG	2 cut(s)	181, 499
MspR9I	CCNGG	2 cut(s)	720, 747
Mva1269I	GAATGC	1 cut(s)	712
MvaI	CCWGG	2 cut(s)	720, 747
MwoI	GCNNNNNNNGC	6 cut(s)	128, 183, 236, 376, 382, 445
NdeII	GATC	3 cut(s)	317, 454, 688
NlaIII	CATG	2 cut(s)	190, 555
NlaIV	GGNNCC	2 cut(s)	229, 351
NmuCI	GTSAC	1 cut(s)	55
PctI	GAATGC	1 cut(s)	712
PfeI	GAWTC	1 cut(s)	738
PkrI	GCNGC	3 cut(s)	176, 179, 378
PleI	GAGTC	3 cut(s)	253, 403, 421
PpsI	GAGTC	3 cut(s)	253, 403, 421
PpuMI	RGGWCCY	1 cut(s)	307
Psp124BI	GAGCTC	3 cut(s)	24, 105, 686
Psp5II	RGGWCCY	1 cut(s)	307
Psp6I	CCWGG	2 cut(s)	718, 745
PspGI	CCWGG	2 cut(s)	718, 745
PspN4I	GGNNCC	2 cut(s)	229, 351
PspOMI	GGGCCC	1 cut(s)	349
PspPI	GGNCC	3 cut(s)	307, 349, 350
PspPPI	RGGWCCY	1 cut(s)	307
PstI	CTGCAG	1 cut(s)	176
PstNI	CAGNNNCTG	1 cut(s)	634
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SacI	GAGCTC	3 cut(s)	24, 105, 686
SaqAI	TTAA	3 cut(s)	182, 291, 500
SatI	GCNGC	3 cut(s)	175, 178, 377
Sau3AI	GATC	3 cut(s)	317, 454, 688
Sau96I	GGNCC	3 cut(s)	307, 349, 350
SchI	GAGTC	3 cut(s)	253, 404, 421
ScrFI	CCNGG	2 cut(s)	720, 747
SduI	GDGCHC	6 cut(s)	24, 105, 232, 353, 538, 686
SfaNI	GCATC	3 cut(s)	109, 394, 744
SfcI	CTRYAG	1 cut(s)	172
SinI	GGWCC	1 cut(s)	307
SmlI	CTYRAG	6 cut(s)	23, 86, 181, 371, 380, 499
SmoI	CTYRAG	6 cut(s)	23, 86, 181, 371, 380, 499
Sse9I	AATT	1 cut(s)	220
SsiI	CCGC	2 cut(s)	654, 677
SspI	AATATT	1 cut(s)	281
SspMI	CTAG	1 cut(s)	392
SstI	GAGCTC	3 cut(s)	24, 105, 686
StyD4I	CCNGG	2 cut(s)	718, 745
TaaI	ACNGT	3 cut(s)	269, 560, 599
TaqI	TCGA	1 cut(s)	234
TasI	AATT	1 cut(s)	220
TfiI	GAWTC	1 cut(s)	738
Tru1I	TTAA	3 cut(s)	182, 291, 500
Tru9I	TTAA	3 cut(s)	182, 291, 500
TscAI	CASTG	2 cut(s)	360, 639
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	174, 177, 376
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	4 cut(s)	206, 572, 719, 730
TspRI	CASTG	2 cut(s)	360, 639
Vha464I	CTTAAG	2 cut(s)	181, 499
VpaK11BI	GGWCC	1 cut(s)	307
XagI	CCTNNNNNAGG	1 cut(s)	502
XcmI	CCANNNNNNNNNTGG	1 cut(s)	731
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.