Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0006987

Physical Location & Seq

Genomic Coordinates Forward (+)

33919414 .. 33924780

Gene Structure 5367 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1204300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGGCAGAGGTAAAGTTGAGCTGAAGAGGATAGAGAATAAAAGTAACAGGCAAGTGACTTTTTCCAAGAGAAGAAATGGGCTGCTCAAGAAAGCTTTTGAACTCTCAGTTCTCTGCGATGCTGAGGTTGCCCTCATTATTTTCTCTGGCCGTGGCAAGCTCTATGAATTCTCTAGCAGTTTAAGCATGATGAAAACGCTTGAAAGGTACCAAAGATGCAGTTATAGTTCCCTGGACGCCAACCGACCTGCCAACGAGACTCAGCAGAACAGCTATCAGGAGTATTTGCAGCTGGAGACAAGAGTTGAGGCCCTCCAACAATCTCAAAGAAACCTTCTTGGGGAAGATTTGGCCACCCTGAACACAAAGAAGCTTGAGGAGCTTGAGCATCAACTAGAGACCTCCTTGAACAAAATTAGGTCAACAAAGACTCAATTTATGCTTGATCAGCTTTCTGATCTTCAAAACAGGGAACAAATGCTAATTGAAGCTAATAAAGCCTTGAGGAGGAAGCTGGAAGAAACAAGTGTGCAAGCTCCACAATTTATGGCATGGGAAGCTGCTGGCGATGGCCACAACAATATTCAGCAAACTTGGCTTCCTTCCAACTCAGAAGCTTTCTTCCATCCCTTGGGAGGAAACAACTCCACTTCCCAAATTGGATACGCCCATTTGGGTTCACATAATGGAATGGATGTTGGAAATCCGGGCCAGCATGTTAATGGATACATTCCTGGGTGGATGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0046983 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

250

Amino Acids

28.31

Weight (kDa)

7.79

Isoelectric Point (pI)

46.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	6.3e-27	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	86 - 173	2.8e-25	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006987)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g13510 FvH4_5g13510 FvH4_5g13510
malus_domestica	MD06G1204100.v1.1 MD06G1204300.v1.1 MD14G1215600.v1.1 MD16G1121900.v1.1
prunus_persica	Prupe.5G208400_v2.0.a1 Prupe.5G208400_v2.0.a1 Prupe.5G208400_v2.0.a1
pyrus_communis	pycom06g18250 pycom06g18260 pycom14g17840 pycom17g06530
rosa_chinensis	RchiOBHm_Chr7g0183521
rosa_laevigata	RLG00000005043
rosa_multiflora	Rmu_sc0003610.1_g000001 Rmu_sc0015926.1_g000005
rosa_roxburghii	Rroxscaffold_3G00270410
rosa_rugosa	Rorug06G0458200
rosa_samantha	Rh7AG059400 Rh7BG059200 Rh7CG061000 Rh7DG059600
rosa_wichuraiana	Rw7G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	256
Acc65I	GGTACC	1 cut(s)	207
AccB1I	GGYRCC	1 cut(s)	207
AccB7I	CCANNNNNTGG	1 cut(s)	631
AcoI	YGGCCR	3 cut(s)	148, 351, 571
AcsI	RAATTY	1 cut(s)	167
AcuI	CTGAAG	1 cut(s)	44
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	4 cut(s)	340, 507, 631, 635
AgsI	TTSAA	5 cut(s)	101, 203, 409, 464, 488
AjnI	CCWGG	2 cut(s)	231, 733
Alw26I	GTCTC	3 cut(s)	251, 290, 392
AoxI	GGCC	5 cut(s)	148, 309, 351, 571, 709
ApeKI	GCWGC	3 cut(s)	82, 289, 560
ApoI	RAATTY	1 cut(s)	167
Asp718I	GGTACC	1 cut(s)	207
AspS9I	GGNCC	2 cut(s)	310, 709
AsuC2I	CCSGG	1 cut(s)	708
BalI	TGGCCA	2 cut(s)	353, 573
BanI	GGYRCC	1 cut(s)	207
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	3 cut(s)	69, 301, 547
BccI	CCATC	2 cut(s)	563, 633
BceAI	ACGGC	1 cut(s)	135
BciT130I	CCWGG	2 cut(s)	233, 735
BciVI	GTATCC	2 cut(s)	656, 719
BclI	TGATCA	1 cut(s)	445
BcnI	CCSGG	1 cut(s)	708
BcoDI	GTCTC	3 cut(s)	251, 290, 392
BfaI	CTAG	2 cut(s)	174, 395
BfuAI	ACCTGC	1 cut(s)	256
BfuI	GTATCC	2 cut(s)	656, 719
BisI	GCNGC	3 cut(s)	83, 290, 561
BlsI	GCNGC	3 cut(s)	84, 291, 562
Bme1390I	CCNGG	3 cut(s)	233, 708, 735
BmgT120I	GGNCC	2 cut(s)	310, 709
BmiI	GGNNCC	1 cut(s)	209
BmrFI	CCNGG	3 cut(s)	233, 708, 735
BmsI	GCATC	4 cut(s)	109, 206, 397, 732
BpmI	CTGGAG	1 cut(s)	314
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	4 cut(s)	71, 395, 404, 523
BpuMI	CCSGG	1 cut(s)	708
BsaHI	GRCGYC	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	392
BsaJI	CCNNGG	4 cut(s)	151, 231, 630, 734
Bsc4I	CCNNNNNNNGG	4 cut(s)	340, 507, 631, 635
BseBI	CCWGG	2 cut(s)	233, 735
BseDI	CCNNGG	4 cut(s)	151, 231, 630, 734
BseGI	GGATG	3 cut(s)	625, 700, 747
BseLI	CCNNNNNNNGG	4 cut(s)	340, 507, 631, 635
BseMII	CTCAG	4 cut(s)	114, 120, 275, 624
BseRI	GAGGAG	2 cut(s)	392, 520
BseXI	GCAGC	3 cut(s)	69, 301, 547
BshFI	GGCC	5 cut(s)	150, 311, 353, 573, 711
BshNI	GGYRCC	1 cut(s)	207
BsiSI	CCGG	1 cut(s)	707
BslI	CCNNNNNNNGG	4 cut(s)	340, 507, 631, 635
BsmAI	GTCTC	3 cut(s)	251, 290, 392
BsnI	GGCC	5 cut(s)	150, 311, 353, 573, 711
Bso31I	GGTCTC	1 cut(s)	392
Bsp143I	GATC	2 cut(s)	445, 457
BspANI	GGCC	5 cut(s)	150, 311, 353, 573, 711
BspCNI	CTCAG	4 cut(s)	115, 119, 274, 623
BspLI	GGNNCC	1 cut(s)	209
BspMI	ACCTGC	1 cut(s)	256
BspT107I	GGYRCC	1 cut(s)	207
BspTNI	GGTCTC	1 cut(s)	392
BssECI	CCNNGG	4 cut(s)	151, 231, 630, 734
BssMI	GATC	2 cut(s)	445, 457
BssNI	GRCGYC	1 cut(s)	237
BssT1I	CCWWGG	1 cut(s)	630
Bst2UI	CCWGG	2 cut(s)	233, 735
Bst6I	CTCTTC	1 cut(s)	20
BstACI	GRCGYC	1 cut(s)	237
BstC8I	GCNNGC	4 cut(s)	158, 534, 565, 713
BstDEI	CTNAG	4 cut(s)	106, 123, 261, 610
BstDSI	CCRYGG	1 cut(s)	151
BstENI	CCTNNNNNAGG	1 cut(s)	505
BstF5I	GGATG	3 cut(s)	625, 700, 747
BstKTI	GATC	2 cut(s)	448, 460
BstMAI	GTCTC	3 cut(s)	251, 290, 392
BstMBI	GATC	2 cut(s)	445, 457
BstMWI	GCNNNNNNNGC	7 cut(s)	128, 183, 379, 448, 497, 557, 595
BstNI	CCWGG	2 cut(s)	233, 735
BstNSI	RCATGY	1 cut(s)	719
BstSCI	CCNGG	3 cut(s)	231, 706, 733
BstV1I	GCAGC	3 cut(s)	69, 301, 547
BsuI	GTATCC	2 cut(s)	656, 719
BsuRI	GGCC	5 cut(s)	150, 311, 353, 573, 711
BtgI	CCRYGG	1 cut(s)	151
BtgZI	GCGATG	2 cut(s)	132, 582
BtsCI	GGATG	3 cut(s)	625, 700, 747
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	4 cut(s)	158, 534, 565, 713
Cfr13I	GGNCC	2 cut(s)	310, 709
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	3 cut(s)	187, 552, 716
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	4 cut(s)	106, 123, 261, 610
DpnI	GATC	2 cut(s)	447, 459
DpnII	GATC	2 cut(s)	445, 457
EaeI	YGGCCR	3 cut(s)	148, 351, 571
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	630
Eco31I	GGTCTC	1 cut(s)	392
Eco57I	CTGAAG	1 cut(s)	44
EcoNI	CCTNNNNNAGG	1 cut(s)	505
EcoO109I	RGGNCCY	1 cut(s)	310
EcoRI	GAATTC	1 cut(s)	167
EcoRII	CCWGG	2 cut(s)	231, 733
EcoT14I	CCWWGG	1 cut(s)	630
ErhI	CCWWGG	1 cut(s)	630
FaeI	CATG	3 cut(s)	190, 555, 719
FaiI	YATR	8 cut(s)	165, 188, 225, 440, 548, 553, 684, 717
FatI	CATG	3 cut(s)	186, 551, 715
FbaI	TGATCA	1 cut(s)	445
Fnu4HI	GCNGC	3 cut(s)	83, 290, 561
FokI	GGATG	2 cut(s)	612, 707
Fsp4HI	GCNGC	3 cut(s)	83, 290, 561
FspBI	CTAG	2 cut(s)	174, 395
GluI	GCNGC	3 cut(s)	83, 290, 561
GsuI	CTGGAG	1 cut(s)	314
HaeIII	GGCC	5 cut(s)	150, 311, 353, 573, 711
HapII	CCGG	1 cut(s)	707
HgaI	GACGC	1 cut(s)	245
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	3 cut(s)	190, 555, 719
HincII	GTYRAC	1 cut(s)	423
HindII	GTYRAC	1 cut(s)	423
HindIII	AAGCTT	3 cut(s)	93, 371, 615
HinfI	GANTC	2 cut(s)	259, 430
HpaII	CCGG	1 cut(s)	707
Hpy166II	GTNNAC	2 cut(s)	423, 680
Hpy188I	TCNGA	2 cut(s)	457, 613
Hpy188III	TCNNGA	2 cut(s)	88, 278
Hpy8I	GTNNAC	2 cut(s)	423, 680
HpyAV	CCTTC	2 cut(s)	344, 612
HpyCH4V	TGCA	3 cut(s)	219, 289, 532
HpyF10VI	GCNNNNNNNGC	7 cut(s)	128, 183, 379, 448, 497, 557, 595
HpyF3I	CTNAG	4 cut(s)	106, 123, 261, 610
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	3 cut(s)	190, 555, 719
KpnI	GGTACC	1 cut(s)	211
Ksp22I	TGATCA	1 cut(s)	445
Kzo9I	GATC	2 cut(s)	445, 457
LmnI	GCTCC	2 cut(s)	379, 541
Lsp1109I	GCAGC	3 cut(s)	69, 301, 547
LweI	GCATC	4 cut(s)	109, 206, 397, 732
MaeI	CTAG	2 cut(s)	174, 395
MaeIII	GTNAC	2 cut(s)	44, 55
MalI	GATC	2 cut(s)	447, 459
MboI	GATC	2 cut(s)	445, 457
MboII	GAAGA	6 cut(s)	37, 84, 356, 452, 530, 613
MlsI	TGGCCA	2 cut(s)	353, 573
MluCI	AATT	6 cut(s)	167, 414, 434, 483, 542, 657
MluNI	TGGCCA	2 cut(s)	353, 573
MlyI	GAGTC	2 cut(s)	253, 424
MmeI	TCCRAC	3 cut(s)	340, 630, 679
Mox20I	TGGCCA	2 cut(s)	353, 573
MscI	TGGCCA	2 cut(s)	353, 573
MseI	TTAA	2 cut(s)	182, 720
MslI	CAYNNNNRTG	1 cut(s)	720
Msp20I	TGGCCA	2 cut(s)	353, 573
MspA1I	CMGCKG	1 cut(s)	292
MspI	CCGG	1 cut(s)	707
MspR9I	CCNGG	3 cut(s)	233, 708, 735
MvaI	CCWGG	2 cut(s)	233, 735
MwoI	GCNNNNNNNGC	7 cut(s)	128, 183, 379, 448, 497, 557, 595
NciI	CCSGG	1 cut(s)	708
NdeII	GATC	2 cut(s)	445, 457
NlaIII	CATG	3 cut(s)	190, 555, 719
NlaIV	GGNNCC	1 cut(s)	209
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	719
PflMI	CCANNNNNTGG	1 cut(s)	631
PkrI	GCNGC	3 cut(s)	84, 291, 562
PleI	GAGTC	2 cut(s)	253, 424
PpsI	GAGTC	2 cut(s)	253, 424
Psp6I	CCWGG	2 cut(s)	231, 733
PspGI	CCWGG	2 cut(s)	231, 733
PspN4I	GGNNCC	1 cut(s)	209
PspPI	GGNCC	2 cut(s)	310, 709
PvuII	CAGCTG	1 cut(s)	292
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	720
SaqAI	TTAA	2 cut(s)	182, 720
SatI	GCNGC	3 cut(s)	83, 290, 561
Sau3AI	GATC	2 cut(s)	445, 457
Sau96I	GGNCC	2 cut(s)	310, 709
SchI	GAGTC	2 cut(s)	253, 424
ScrFI	CCNGG	3 cut(s)	233, 708, 735
SfaNI	GCATC	4 cut(s)	109, 206, 397, 732
SmiMI	CAYNNNNRTG	1 cut(s)	720
SmlI	CTYRAG	4 cut(s)	86, 374, 383, 502
SmoI	CTYRAG	4 cut(s)	86, 374, 383, 502
Sse9I	AATT	6 cut(s)	167, 414, 434, 483, 542, 657
SspI	AATATT	1 cut(s)	583
SspMI	CTAG	2 cut(s)	174, 395
StyD4I	CCNGG	3 cut(s)	231, 706, 733
StyI	CCWWGG	1 cut(s)	630
TasI	AATT	6 cut(s)	167, 414, 434, 483, 542, 657
Tru1I	TTAA	2 cut(s)	182, 720
Tru9I	TTAA	2 cut(s)	182, 720
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	82, 289, 560
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	180, 206
Van91I	CCANNNNNTGG	1 cut(s)	631
XagI	CCTNNNNNAGG	1 cut(s)	505
XapI	RAATTY	1 cut(s)	167
XceI	RCATGY	1 cut(s)	719
XcmI	CCANNNNNNNNNTGG	1 cut(s)	719
XspI	CTAG	2 cut(s)	174, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.