Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0006987

Physical Location & Seq

Genomic Coordinates Forward (+)

29920752 .. 29926538

Gene Structure 5787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1215600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGGCAGAGGCAGAGTTGAGCTGAAGAGGATAGAGAATAAAATTAACAGGCAAGTGACTTTTGCCAAAAGAAGAAATGGGCTGCTCAAGAAAGCTTATGAGCTCTCAGTTCTCTGCGATGCTGAGGTTGCCCTCATTATTTTCTCTAGCCGTGGCAAGCTCTATGAATTCTGTAGCAGTTTCAGCATGATGAAAACGCTTGAAAAGTACCAAAGTTGCAGTTATGGTTCCCTGGAAGCCAACCTACCAGCCAACGAGACCCAGCAGAACAGCTATCAGGACTATTTGATGTTGAAGGCAAGAGTTGAGGTCCTCCAACAATCTCAAAGAAACCTTCTTGGGGAAGATTTGTCCCACCTGAACACAAAGGAGCTTGAGCATCTTGAGCATCAATTGGAGACCTCTTTGAAGCAAATTAGGTCAAGAAAGACTCAGTTTATTCTCGATCAGCTTTCTGATCTTCAAAACAGGGAACAGATGCTAGTTGAAGCTAACAAAGCCTTGAAGAGGAAGCTGGAAGAAACAAGTGTGCAAGCTCCAGAAGGAATGGCATGGGAAGCTGCTGGCCATGGCCCCAACAACATTCAGCAAACTCGGCTTCCTTCCCACTCAGAAGCCTTCTTCCATCCCTTGGAAGGAAACAACTCCAGTTCCCAAATTGGATACACCCATATGGGTTCAGATAATGAAATGAATGTTGGAAATCCGGGCCAGTATGTTAATGGATATATTCCTGGGTGGATGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0046983 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

250

Amino Acids

28.41

Weight (kDa)

7.06

Isoelectric Point (pI)

43.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	1.2e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	86 - 173	1.8e-27	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006987)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g13510 FvH4_5g13510 FvH4_5g13510
malus_domestica	MD06G1204100.v1.1 MD06G1204300.v1.1 MD14G1215600.v1.1 MD16G1121900.v1.1
prunus_persica	Prupe.5G208400_v2.0.a1 Prupe.5G208400_v2.0.a1 Prupe.5G208400_v2.0.a1
pyrus_communis	pycom06g18250 pycom06g18260 pycom14g17840 pycom17g06530
rosa_chinensis	RchiOBHm_Chr7g0183521
rosa_laevigata	RLG00000005043
rosa_multiflora	Rmu_sc0003610.1_g000001 Rmu_sc0015926.1_g000005
rosa_roxburghii	Rroxscaffold_3G00270410
rosa_rugosa	Rorug06G0458200
rosa_samantha	Rh7AG059400 Rh7BG059200 Rh7CG061000 Rh7DG059600
rosa_wichuraiana	Rw7G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	631
AcoI	YGGCCR	1 cut(s)	565
AcsI	RAATTY	1 cut(s)	167
AcuI	CTGAAG	1 cut(s)	44
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	4 cut(s)	340, 507, 631, 635
AgsI	TTSAA	6 cut(s)	203, 295, 409, 464, 488, 505
AjnI	CCWGG	2 cut(s)	231, 733
AjuI	GAANNNNNNNTTGG	2 cut(s)	681, 713
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	251, 392
AoxI	GGCC	3 cut(s)	565, 571, 709
ApeKI	GCWGC	2 cut(s)	82, 560
ApoI	RAATTY	1 cut(s)	167
AspS9I	GGNCC	3 cut(s)	310, 572, 709
AsuC2I	CCSGG	1 cut(s)	708
AvaII	GGWCC	1 cut(s)	310
BalI	TGGCCA	1 cut(s)	567
BanII	GRGCYC	1 cut(s)	105
BarI	GAAGNNNNNNTAC	2 cut(s)	228, 260
Bbv12I	GWGCWC	1 cut(s)	105
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	2 cut(s)	69, 547
BccI	CCATC	1 cut(s)	633
BceAI	ACGGC	1 cut(s)	135
BciT130I	CCWGG	2 cut(s)	233, 735
BciVI	GTATCC	1 cut(s)	656
BcnI	CCSGG	1 cut(s)	708
BcoDI	GTCTC	2 cut(s)	251, 392
BfaI	CTAG	2 cut(s)	147, 482
BfmI	CTRYAG	1 cut(s)	172
BfuI	GTATCC	1 cut(s)	656
BisI	GCNGC	2 cut(s)	83, 561
BlsI	GCNGC	2 cut(s)	84, 562
Bme1390I	CCNGG	3 cut(s)	233, 708, 735
Bme18I	GGWCC	1 cut(s)	310
BmgT120I	GGNCC	3 cut(s)	310, 572, 709
BmiI	GGNNCC	2 cut(s)	229, 574
BmrFI	CCNGG	3 cut(s)	233, 708, 735
BmsI	GCATC	5 cut(s)	109, 388, 397, 468, 732
BpmI	CTGGAG	2 cut(s)	522, 631
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	3 cut(s)	71, 395, 404
BpuMI	CCSGG	1 cut(s)	708
BsaI	GGTCTC	2 cut(s)	251, 392
BsaJI	CCNNGG	5 cut(s)	151, 231, 568, 630, 734
Bsc4I	CCNNNNNNNGG	4 cut(s)	340, 507, 631, 635
Bse1I	ACTGG	2 cut(s)	648, 712
BseBI	CCWGG	2 cut(s)	233, 735
BseDI	CCNNGG	5 cut(s)	151, 231, 568, 630, 734
BseGI	GGATG	2 cut(s)	625, 747
BseLI	CCNNNNNNNGG	4 cut(s)	340, 507, 631, 635
BseMII	CTCAG	4 cut(s)	114, 120, 446, 624
BseNI	ACTGG	2 cut(s)	648, 712
BseXI	GCAGC	2 cut(s)	69, 547
BseYI	CCCAGC	1 cut(s)	261
BshFI	GGCC	3 cut(s)	567, 573, 711
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	707
BslFI	GGGAC	1 cut(s)	337
BslI	CCNNNNNNNGG	4 cut(s)	340, 507, 631, 635
BsmAI	GTCTC	2 cut(s)	251, 392
BsmFI	GGGAC	1 cut(s)	337
BsnI	GGCC	3 cut(s)	567, 573, 711
Bso31I	GGTCTC	2 cut(s)	251, 392
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	445, 457
Bsp19I	CCATGG	1 cut(s)	568
BspANI	GGCC	3 cut(s)	567, 573, 711
BspCNI	CTCAG	4 cut(s)	115, 119, 445, 623
BspLI	GGNNCC	2 cut(s)	229, 574
BspTNI	GGTCTC	2 cut(s)	251, 392
BsrI	ACTGG	2 cut(s)	648, 712
BssECI	CCNNGG	5 cut(s)	151, 231, 568, 630, 734
BssMI	GATC	2 cut(s)	445, 457
BssT1I	CCWWGG	2 cut(s)	568, 630
Bst2UI	CCWGG	2 cut(s)	233, 735
Bst6I	CTCTTC	2 cut(s)	20, 500
BstC8I	GCNNGC	3 cut(s)	158, 534, 565
BstDEI	CTNAG	4 cut(s)	106, 123, 432, 610
BstDSI	CCRYGG	2 cut(s)	151, 568
BstENI	CCTNNNNNAGG	1 cut(s)	505
BstF5I	GGATG	2 cut(s)	625, 747
BstKTI	GATC	2 cut(s)	448, 460
BstMAI	GTCTC	2 cut(s)	251, 392
BstMBI	GATC	2 cut(s)	445, 457
BstMWI	GCNNNNNNNGC	6 cut(s)	128, 183, 385, 497, 557, 595
BstNI	CCWGG	2 cut(s)	233, 735
BstSCI	CCNGG	3 cut(s)	231, 706, 733
BstSFI	CTRYAG	1 cut(s)	172
BstV1I	GCAGC	2 cut(s)	69, 547
BsuI	GTATCC	1 cut(s)	656
BsuRI	GGCC	3 cut(s)	567, 573, 711
BtgI	CCRYGG	2 cut(s)	151, 568
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	625, 747
Cac8I	GCNNGC	3 cut(s)	158, 534, 565
Cfr13I	GGNCC	3 cut(s)	310, 572, 709
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	3 cut(s)	187, 552, 569
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	4 cut(s)	106, 123, 432, 610
DpnI	GATC	2 cut(s)	447, 459
DpnII	GATC	2 cut(s)	445, 457
EaeI	YGGCCR	1 cut(s)	565
Eam1104I	CTCTTC	2 cut(s)	20, 500
EarI	CTCTTC	2 cut(s)	20, 500
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	2 cut(s)	568, 630
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	2 cut(s)	251, 392
Eco47I	GGWCC	1 cut(s)	310
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	44
EcoICRI	GAGCTC	1 cut(s)	103
EcoNI	CCTNNNNNAGG	1 cut(s)	505
EcoO109I	RGGNCCY	1 cut(s)	310
EcoRI	GAATTC	1 cut(s)	167
EcoRII	CCWGG	2 cut(s)	231, 733
EcoT14I	CCWWGG	2 cut(s)	568, 630
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	2 cut(s)	568, 630
FaeI	CATG	3 cut(s)	190, 555, 572
FaqI	GGGAC	1 cut(s)	337
FatI	CATG	3 cut(s)	186, 551, 568
FauNDI	CATATG	1 cut(s)	672
Fnu4HI	GCNGC	2 cut(s)	83, 561
FokI	GGATG	1 cut(s)	612
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	2 cut(s)	83, 561
FspBI	CTAG	2 cut(s)	147, 482
GluI	GCNGC	2 cut(s)	83, 561
GsaI	CCCAGC	1 cut(s)	265
GsuI	CTGGAG	2 cut(s)	522, 631
HaeIII	GGCC	3 cut(s)	567, 573, 711
HapII	CCGG	1 cut(s)	707
Hin1II	CATG	3 cut(s)	190, 555, 572
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	1 cut(s)	430
HpaII	CCGG	1 cut(s)	707
Hpy188I	TCNGA	3 cut(s)	457, 613, 682
Hpy188III	TCNNGA	6 cut(s)	88, 278, 383, 423, 443, 539
HpyAV	CCTTC	6 cut(s)	289, 344, 536, 612, 628, 629
HpyCH4V	TGCA	2 cut(s)	219, 532
HpyF10VI	GCNNNNNNNGC	6 cut(s)	128, 183, 385, 497, 557, 595
HpyF3I	CTNAG	4 cut(s)	106, 123, 432, 610
Hsp92II	CATG	3 cut(s)	190, 555, 572
Kzo9I	GATC	2 cut(s)	445, 457
LmnI	GCTCC	2 cut(s)	370, 541
Lsp1109I	GCAGC	2 cut(s)	69, 547
LweI	GCATC	5 cut(s)	109, 388, 397, 468, 732
MaeI	CTAG	2 cut(s)	147, 482
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	447, 459
MboI	GATC	2 cut(s)	445, 457
MboII	GAAGA	7 cut(s)	37, 84, 356, 452, 517, 530, 613
MfeI	CAATTG	1 cut(s)	392
MhlI	GDGCHC	1 cut(s)	105
MlsI	TGGCCA	1 cut(s)	567
MluCI	AATT	5 cut(s)	42, 167, 392, 414, 657
MluNI	TGGCCA	1 cut(s)	567
MlyI	GAGTC	1 cut(s)	424
MmeI	TCCRAC	2 cut(s)	340, 679
MnlI	CCTC	7 cut(s)	21, 118, 143, 301, 323, 412, 501
Mox20I	TGGCCA	1 cut(s)	567
MscI	TGGCCA	1 cut(s)	567
MseI	TTAA	2 cut(s)	45, 720
MslI	CAYNNNNRTG	1 cut(s)	671
Msp20I	TGGCCA	1 cut(s)	567
MspI	CCGG	1 cut(s)	707
MspR9I	CCNGG	3 cut(s)	233, 708, 735
MunI	CAATTG	1 cut(s)	392
MvaI	CCWGG	2 cut(s)	233, 735
MwoI	GCNNNNNNNGC	6 cut(s)	128, 183, 385, 497, 557, 595
NciI	CCSGG	1 cut(s)	708
NcoI	CCATGG	1 cut(s)	568
NdeI	CATATG	1 cut(s)	672
NdeII	GATC	2 cut(s)	445, 457
NlaIII	CATG	3 cut(s)	190, 555, 572
NlaIV	GGNNCC	2 cut(s)	229, 574
NmeAIII	GCCGAG	1 cut(s)	574
NmuCI	GTSAC	1 cut(s)	55
PflMI	CCANNNNNTGG	1 cut(s)	631
PkrI	GCNGC	2 cut(s)	84, 562
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
PpuMI	RGGWCCY	1 cut(s)	310
Psp124BI	GAGCTC	1 cut(s)	105
Psp5II	RGGWCCY	1 cut(s)	310
Psp6I	CCWGG	2 cut(s)	231, 733
PspFI	CCCAGC	1 cut(s)	261
PspGI	CCWGG	2 cut(s)	231, 733
PspN4I	GGNNCC	2 cut(s)	229, 574
PspPI	GGNCC	3 cut(s)	310, 572, 709
PspPPI	RGGWCCY	1 cut(s)	310
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	671
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	45, 720
SatI	GCNGC	2 cut(s)	83, 561
Sau3AI	GATC	2 cut(s)	445, 457
Sau96I	GGNCC	3 cut(s)	310, 572, 709
SchI	GAGTC	1 cut(s)	424
ScrFI	CCNGG	3 cut(s)	233, 708, 735
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	5 cut(s)	109, 388, 397, 468, 732
SfcI	CTRYAG	1 cut(s)	172
SinI	GGWCC	1 cut(s)	310
SmiMI	CAYNNNNRTG	1 cut(s)	671
SmlI	CTYRAG	3 cut(s)	86, 374, 383
SmoI	CTYRAG	3 cut(s)	86, 374, 383
Sse9I	AATT	5 cut(s)	42, 167, 392, 414, 657
SspMI	CTAG	2 cut(s)	147, 482
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	3 cut(s)	231, 706, 733
StyI	CCWWGG	2 cut(s)	568, 630
TaqI	TCGA	1 cut(s)	444
TasI	AATT	5 cut(s)	42, 167, 392, 414, 657
Tru1I	TTAA	2 cut(s)	45, 720
Tru9I	TTAA	2 cut(s)	45, 720
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	82, 560
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	4 cut(s)	180, 206, 702, 707
Van91I	CCANNNNNTGG	1 cut(s)	631
VpaK11BI	GGWCC	1 cut(s)	310
XagI	CCTNNNNNAGG	1 cut(s)	505
XapI	RAATTY	1 cut(s)	167
XcmI	CCANNNNNNNNNTGG	1 cut(s)	719
XspI	CTAG	2 cut(s)	147, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.