Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0006987

Physical Location & Seq

Genomic Coordinates Forward (+)

19661706 .. 19667908

Gene Structure 6203 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g17840.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGGCAGAGGCAGAGTTGAGCTGAAGAGGATAGAGAATAAAATTAACAGGCAAGTGACTTTTGCCAAAAGAAGAAATGGGCTGCTCAAGAAAGCTTATGAGCTCTCAGTTCTCTGCGATGCTGAGGTTGCCCTCATTATTTTCTCTAGCCGTGGCAAGCTCTATGAATTCTGTAGCAGTTTCAGCATGATGAAAACGCTTGAAAAGTACCAAAGTTGCAGTTATGGTTCCCTGGAAGCCAACCTACCAGCCAACGAGACTCAGAACAGCTATCAGGACTATTTGACGTTGAAGGCAAGAGTTGAGGTCCTCCAACAATCTCAAAGAAACCTTCTTGGGGAAGATTTGCAACCCCTGAACACAAAGGAGCTTGAGCATCTTGAGCATCAGTTGGAGACCTCTTTGAAGCAAATTAGGTCAAGAAAGACTCAGTTTATTCTCGATCAGCTTTCTGATCTTCAAAACAGGGAACAGATGCTAGTTGAAGCTAACAAATCCTTGAAGAGGAAGCTGGAAGAAACAAGTGTGCAAGCTCCAGAAGGAATGGCATGGGAAGCTGCTGGCCATGACCACAACTACAACATTCAGCAAACTCGGCTTCCTTCCCACTCAGAAGCCTTCTTCCATCCCTTGGAAGGAAACAACTCCAGTTCCCAAATTGGATACACCCATATGGGTTCAGATAATGAAATGAATGTTGGAAATCCGGGACAGTATGTTAACGGATTTATTCCTGGGTGGATGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0046983 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

250

Amino Acids

28.52

Weight (kDa)

6.67

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006987)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g13510 FvH4_5g13510 FvH4_5g13510
malus_domestica	MD06G1204100.v1.1 MD06G1204300.v1.1 MD14G1215600.v1.1 MD16G1121900.v1.1
prunus_persica	Prupe.5G208400_v2.0.a1 Prupe.5G208400_v2.0.a1 Prupe.5G208400_v2.0.a1
pyrus_communis	pycom06g18250 pycom06g18260 pycom14g17840 pycom17g06530
rosa_chinensis	RchiOBHm_Chr7g0183521
rosa_laevigata	RLG00000005043
rosa_multiflora	Rmu_sc0003610.1_g000001 Rmu_sc0015926.1_g000005
rosa_roxburghii	Rroxscaffold_3G00270410
rosa_rugosa	Rorug06G0458200
rosa_samantha	Rh7AG059400 Rh7BG059200 Rh7CG061000 Rh7DG059600
rosa_wichuraiana	Rw7G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	631
AcoI	YGGCCR	1 cut(s)	562
AcsI	RAATTY	1 cut(s)	167
AcuI	CTGAAG	1 cut(s)	44
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	4 cut(s)	337, 504, 631, 635
AgsI	TTSAA	6 cut(s)	203, 292, 406, 461, 485, 502
AjnI	CCWGG	2 cut(s)	231, 733
AjuI	GAANNNNNNNTTGG	2 cut(s)	681, 713
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	251, 389
AoxI	GGCC	1 cut(s)	562
ApeKI	GCWGC	2 cut(s)	82, 557
ApoI	RAATTY	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	307
AsuC2I	CCSGG	1 cut(s)	708
AvaII	GGWCC	1 cut(s)	307
BalI	TGGCCA	1 cut(s)	564
BanII	GRGCYC	1 cut(s)	105
BarI	GAAGNNNNNNTAC	2 cut(s)	228, 260
Bbv12I	GWGCWC	1 cut(s)	105
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	2 cut(s)	69, 544
BccI	CCATC	1 cut(s)	633
BceAI	ACGGC	1 cut(s)	135
BciT130I	CCWGG	2 cut(s)	233, 735
BciVI	GTATCC	1 cut(s)	656
BcnI	CCSGG	1 cut(s)	708
BcoDI	GTCTC	2 cut(s)	251, 389
BfaI	CTAG	2 cut(s)	147, 479
BfmI	CTRYAG	1 cut(s)	172
BfuI	GTATCC	1 cut(s)	656
BisI	GCNGC	2 cut(s)	83, 558
BlsI	GCNGC	2 cut(s)	84, 559
Bme1390I	CCNGG	3 cut(s)	233, 708, 735
Bme18I	GGWCC	1 cut(s)	307
BmgT120I	GGNCC	1 cut(s)	307
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	3 cut(s)	233, 708, 735
BmsI	GCATC	5 cut(s)	109, 385, 394, 465, 732
BpmI	CTGGAG	2 cut(s)	519, 631
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	3 cut(s)	71, 392, 401
BpuMI	CCSGG	1 cut(s)	708
BsaI	GGTCTC	1 cut(s)	389
BsaJI	CCNNGG	4 cut(s)	151, 231, 630, 734
Bsc4I	CCNNNNNNNGG	4 cut(s)	337, 504, 631, 635
Bse1I	ACTGG	1 cut(s)	648
BseBI	CCWGG	2 cut(s)	233, 735
BseDI	CCNNGG	4 cut(s)	151, 231, 630, 734
BseGI	GGATG	2 cut(s)	625, 747
BseLI	CCNNNNNNNGG	4 cut(s)	337, 504, 631, 635
BseMII	CTCAG	5 cut(s)	114, 120, 275, 443, 624
BseNI	ACTGG	1 cut(s)	648
BseXI	GCAGC	2 cut(s)	69, 544
BshFI	GGCC	1 cut(s)	564
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	707
BslFI	GGGAC	1 cut(s)	723
BslI	CCNNNNNNNGG	4 cut(s)	337, 504, 631, 635
BsmAI	GTCTC	2 cut(s)	251, 389
BsmFI	GGGAC	1 cut(s)	723
BsnI	GGCC	1 cut(s)	564
Bso31I	GGTCTC	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	442, 454
BspANI	GGCC	1 cut(s)	564
BspCNI	CTCAG	5 cut(s)	115, 119, 274, 442, 623
BspLI	GGNNCC	1 cut(s)	229
BspTNI	GGTCTC	1 cut(s)	389
BsrI	ACTGG	1 cut(s)	648
BssECI	CCNNGG	4 cut(s)	151, 231, 630, 734
BssMI	GATC	2 cut(s)	442, 454
BssT1I	CCWWGG	1 cut(s)	630
Bst2UI	CCWGG	2 cut(s)	233, 735
Bst4CI	ACNGT	1 cut(s)	714
Bst6I	CTCTTC	2 cut(s)	20, 497
BstC8I	GCNNGC	3 cut(s)	158, 531, 562
BstDEI	CTNAG	5 cut(s)	106, 123, 261, 429, 610
BstDSI	CCRYGG	1 cut(s)	151
BstENI	CCTNNNNNAGG	1 cut(s)	502
BstF5I	GGATG	2 cut(s)	625, 747
BstKTI	GATC	2 cut(s)	445, 457
BstMAI	GTCTC	2 cut(s)	251, 389
BstMBI	GATC	2 cut(s)	442, 454
BstMWI	GCNNNNNNNGC	5 cut(s)	128, 183, 382, 554, 595
BstNI	CCWGG	2 cut(s)	233, 735
BstSCI	CCNGG	3 cut(s)	231, 706, 733
BstSFI	CTRYAG	1 cut(s)	172
BstV1I	GCAGC	2 cut(s)	69, 544
BsuI	GTATCC	1 cut(s)	656
BsuRI	GGCC	1 cut(s)	564
BtgI	CCRYGG	1 cut(s)	151
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	625, 747
Cac8I	GCNNGC	3 cut(s)	158, 531, 562
Cfr13I	GGNCC	1 cut(s)	307
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	3 cut(s)	187, 549, 566
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	5 cut(s)	106, 123, 261, 429, 610
DpnI	GATC	2 cut(s)	444, 456
DpnII	GATC	2 cut(s)	442, 454
EaeI	YGGCCR	1 cut(s)	562
Eam1104I	CTCTTC	2 cut(s)	20, 497
EarI	CTCTTC	2 cut(s)	20, 497
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	630
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	389
Eco47I	GGWCC	1 cut(s)	307
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	44
EcoICRI	GAGCTC	1 cut(s)	103
EcoNI	CCTNNNNNAGG	1 cut(s)	502
EcoO109I	RGGNCCY	1 cut(s)	307
EcoRI	GAATTC	1 cut(s)	167
EcoRII	CCWGG	2 cut(s)	231, 733
EcoT14I	CCWWGG	1 cut(s)	630
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	630
FaeI	CATG	3 cut(s)	190, 552, 569
FaiI	YATR	9 cut(s)	99, 165, 188, 225, 550, 567, 672, 674, 717
FaqI	GGGAC	1 cut(s)	723
FatI	CATG	3 cut(s)	186, 548, 565
FauNDI	CATATG	1 cut(s)	672
Fnu4HI	GCNGC	2 cut(s)	83, 558
FokI	GGATG	1 cut(s)	612
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	2 cut(s)	83, 558
FspBI	CTAG	2 cut(s)	147, 479
GluI	GCNGC	2 cut(s)	83, 558
GsuI	CTGGAG	2 cut(s)	519, 631
HaeIII	GGCC	1 cut(s)	564
HapII	CCGG	1 cut(s)	707
Hin1II	CATG	3 cut(s)	190, 552, 569
HincII	GTYRAC	1 cut(s)	721
HindII	GTYRAC	1 cut(s)	721
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	2 cut(s)	259, 427
HpaI	GTTAAC	1 cut(s)	721
HpaII	CCGG	1 cut(s)	707
Hpy166II	GTNNAC	1 cut(s)	721
Hpy188I	TCNGA	4 cut(s)	264, 454, 613, 682
Hpy188III	TCNNGA	6 cut(s)	88, 275, 380, 420, 440, 536
Hpy8I	GTNNAC	1 cut(s)	721
HpyAV	CCTTC	6 cut(s)	286, 341, 533, 612, 628, 629
HpyCH4III	ACNGT	1 cut(s)	714
HpyCH4IV	ACGT	1 cut(s)	287
HpyCH4V	TGCA	3 cut(s)	219, 349, 529
HpyF10VI	GCNNNNNNNGC	5 cut(s)	128, 183, 382, 554, 595
HpyF3I	CTNAG	5 cut(s)	106, 123, 261, 429, 610
HpySE526I	ACGT	1 cut(s)	287
Hsp92II	CATG	3 cut(s)	190, 552, 569
KspAI	GTTAAC	1 cut(s)	721
Kzo9I	GATC	2 cut(s)	442, 454
LmnI	GCTCC	2 cut(s)	367, 538
Lsp1109I	GCAGC	2 cut(s)	69, 544
LweI	GCATC	5 cut(s)	109, 385, 394, 465, 732
MaeI	CTAG	2 cut(s)	147, 479
MaeII	ACGT	1 cut(s)	287
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	444, 456
MboI	GATC	2 cut(s)	442, 454
MboII	GAAGA	7 cut(s)	37, 84, 353, 449, 514, 527, 613
MhlI	GDGCHC	1 cut(s)	105
MlsI	TGGCCA	1 cut(s)	564
MluCI	AATT	4 cut(s)	42, 167, 411, 657
MluNI	TGGCCA	1 cut(s)	564
MlyI	GAGTC	2 cut(s)	253, 421
MmeI	TCCRAC	3 cut(s)	337, 372, 679
MnlI	CCTC	7 cut(s)	21, 118, 143, 298, 320, 409, 498
Mox20I	TGGCCA	1 cut(s)	564
MscI	TGGCCA	1 cut(s)	564
MseI	TTAA	2 cut(s)	45, 720
MslI	CAYNNNNRTG	1 cut(s)	671
Msp20I	TGGCCA	1 cut(s)	564
MspI	CCGG	1 cut(s)	707
MspR9I	CCNGG	3 cut(s)	233, 708, 735
MvaI	CCWGG	2 cut(s)	233, 735
MwoI	GCNNNNNNNGC	5 cut(s)	128, 183, 382, 554, 595
NciI	CCSGG	1 cut(s)	708
NdeI	CATATG	1 cut(s)	672
NdeII	GATC	2 cut(s)	442, 454
NlaIII	CATG	3 cut(s)	190, 552, 569
NlaIV	GGNNCC	1 cut(s)	229
NmeAIII	GCCGAG	1 cut(s)	574
NmuCI	GTSAC	1 cut(s)	55
PflMI	CCANNNNNTGG	1 cut(s)	631
PfoI	TCCNGGA	1 cut(s)	706
PkrI	GCNGC	2 cut(s)	84, 559
PleI	GAGTC	2 cut(s)	253, 421
PpsI	GAGTC	2 cut(s)	253, 421
PpuMI	RGGWCCY	1 cut(s)	307
Psp124BI	GAGCTC	1 cut(s)	105
Psp5II	RGGWCCY	1 cut(s)	307
Psp6I	CCWGG	2 cut(s)	231, 733
PspGI	CCWGG	2 cut(s)	231, 733
PspN4I	GGNNCC	1 cut(s)	229
PspPI	GGNCC	1 cut(s)	307
PspPPI	RGGWCCY	1 cut(s)	307
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	671
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	45, 720
SatI	GCNGC	2 cut(s)	83, 558
Sau3AI	GATC	2 cut(s)	442, 454
Sau96I	GGNCC	1 cut(s)	307
SchI	GAGTC	2 cut(s)	253, 421
ScrFI	CCNGG	3 cut(s)	233, 708, 735
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	5 cut(s)	109, 385, 394, 465, 732
SfcI	CTRYAG	1 cut(s)	172
SinI	GGWCC	1 cut(s)	307
SmiMI	CAYNNNNRTG	1 cut(s)	671
SmlI	CTYRAG	3 cut(s)	86, 371, 380
SmoI	CTYRAG	3 cut(s)	86, 371, 380
Sse9I	AATT	4 cut(s)	42, 167, 411, 657
SspMI	CTAG	2 cut(s)	147, 479
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	3 cut(s)	231, 706, 733
StyI	CCWWGG	1 cut(s)	630
TaaI	ACNGT	1 cut(s)	714
TaiI	ACGT	1 cut(s)	290
TaqI	TCGA	1 cut(s)	441
TasI	AATT	4 cut(s)	42, 167, 411, 657
Tru1I	TTAA	2 cut(s)	45, 720
Tru9I	TTAA	2 cut(s)	45, 720
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	82, 557
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	4 cut(s)	180, 206, 702, 707
TspGWI	ACGGA	1 cut(s)	738
Van91I	CCANNNNNTGG	1 cut(s)	631
VpaK11BI	GGWCC	1 cut(s)	307
XagI	CCTNNNNNAGG	1 cut(s)	502
XapI	RAATTY	1 cut(s)	167
XspI	CTAG	2 cut(s)	147, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.