pycom17g06530
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0006987
Physical Location & Seq
Forward (+)
4704505 .. 4704693
189 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g06530.1

Sequence Viewer

Length: 189 bp
ATGGGGAGAGGAAGAGTGGAGCTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTCACATTTGCAAAGAGAAGAAATGGGCTTCTAAAGAAAGCTTATGAGCTCTCCGTTCTCTGCGATGCTGAGGTTGCTCTCATCATCTTCTCCAACCGTGGCAAGCTCTATGAGTTTTGCAGCAGCTCTAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

63

Amino Acids

7.18

Weight (kDa)

10.22

Isoelectric Point (pI)

42.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 57 6.9e-28 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 44
AluBI AGCT 5 cut(s) 22, 95, 103, 160, 180
AluI AGCT 5 cut(s) 22, 95, 103, 160, 180
Alw21I GWGCWC 1 cut(s) 105
ApeKI GCWGC 2 cut(s) 174, 177
BanII GRGCYC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 105
BbvCI CCTCAGC 1 cut(s) 123
BfaI CTAG 1 cut(s) 183
BisI GCNGC 2 cut(s) 175, 178
BlsI GCNGC 2 cut(s) 176, 179
BmsI GCATC 1 cut(s) 109
Bpu10I CCTNAGC 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 151
BseDI CCNNGG 1 cut(s) 151
BseMII CTCAG 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 105
Bsp1286I GDGCHC 1 cut(s) 105
BspCNI CTCAG 1 cut(s) 115
BssECI CCNNGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 152
Bst6I CTCTTC 2 cut(s) 7, 20
BstC8I GCNNGC 1 cut(s) 158
BstDEI CTNAG 1 cut(s) 123
BstDSI CCRYGG 1 cut(s) 151
BstMWI GCNNNNNNNGC 1 cut(s) 128
BtgI CCRYGG 1 cut(s) 151
BtgZI GCGATG 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 158
CviJI RGCY 6 cut(s) 22, 82, 95, 103, 160, 180
CviKI_1 RGCY 6 cut(s) 22, 82, 95, 103, 160, 180
DdeI CTNAG 1 cut(s) 123
Eam1104I CTCTTC 2 cut(s) 7, 20
EarI CTCTTC 2 cut(s) 7, 20
Ecl136II GAGCTC 1 cut(s) 103
Eco24I GRGCYC 1 cut(s) 105
Eco53kI GAGCTC 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 44
EcoICRI GAGCTC 1 cut(s) 103
EcoT38I GRGCYC 1 cut(s) 105
FaiI YATR 2 cut(s) 99, 165
Fnu4HI GCNGC 2 cut(s) 175, 178
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 2 cut(s) 175, 178
FspBI CTAG 1 cut(s) 183
GluI GCNGC 2 cut(s) 175, 178
HindIII AAGCTT 1 cut(s) 93
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4V TGCA 2 cut(s) 65, 174
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 1 cut(s) 123
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 1 cut(s) 34
LweI GCATC 1 cut(s) 109
MaeI CTAG 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 55
MboII GAAGA 4 cut(s) 24, 37, 84, 133
MhlI GDGCHC 1 cut(s) 105
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 2 cut(s) 21, 118
MwoI GCNNNNNNNGC 1 cut(s) 128
NmuCI GTSAC 1 cut(s) 55
PkrI GCNGC 2 cut(s) 176, 179
Psp124BI GAGCTC 1 cut(s) 105
SacI GAGCTC 1 cut(s) 105
SatI GCNGC 2 cut(s) 175, 178
SduI GDGCHC 1 cut(s) 105
SetI ASST 7 cut(s) 24, 97, 105, 129, 162, 182, 188
SfaNI GCATC 1 cut(s) 109
SgeI CNNG 5 cut(s) 52, 61, 65, 164, 169
SspMI CTAG 1 cut(s) 183
SstI GAGCTC 1 cut(s) 105
TaaI ACNGT 1 cut(s) 152
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 2 cut(s) 174, 177
Tsp45I GTSAC 1 cut(s) 55
TspGWI ACGGA 1 cut(s) 97
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.