Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0006987

Physical Location & Seq

Genomic Coordinates Forward (+)

33879024 .. 33884251

Gene Structure 5228 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1204100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGGCAGAGGTAAAGTTGAGCTGAAGAGGATAGAGAATAAAAGTAACAGGCAAGTGACTTTTTCCAAGAGAAGAAATGGGCTGCTCAAGAAAGCTTTTGAGCTCTCAGTTCTCTGCGATGCTGAGGTTGCCCTCATTATTTTCTCTGGCCGTGGAAAGCTCTATGAATTCTCTAGCAGTTTAAGCATGATGAAAACGCTTGAAAAGTACCAAAGATGCAGTTATAGTTCCCTGGACGCCAACCGACCTGCCAAGGAGACTCAGCAGAACAGCTATCAGGAGTATTTGCAGCTGGAGACAAGAGTTGACGTCCTCCAACAATCTCAAAGAAACCTTCTTGGGGAAGATTTGGCCACCCTGAATACAAAGGAGCTTGAGGAGCTTGAGCATCAACTGGAGACCTCCTTGAACAAAATAAGGTCAACAAAGACTCAATTTATGCTTGATCAGCTTTCTGATCTTCAAAACACGGAACAAATGCTAGTTGAAGCTAACAAAGCCTTGAGGAGGAAGCTGGAAGAAACAAGTGTGCAAGCTCCACAATTTATGGCAAGGGAAGCTGCTGGCCATGGCCACAACAATGGTCAGCAAACTTGGCTTCCTTCCAACTCAGAAGCCTTCTTCCATCCTTTGGGAGGAAACAACTCCACTTACCAAATTGGTGGGTATGCAGATACACTCATGCACCCATTTGGGTTCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0046983 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

235

Amino Acids

26.69

Weight (kDa)

7.77

Isoelectric Point (pI)

47.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	5.7e-27	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	86 - 173	2.3e-26	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006987)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g13510 FvH4_5g13510 FvH4_5g13510
malus_domestica	MD06G1204100.v1.1 MD06G1204300.v1.1 MD14G1215600.v1.1 MD16G1121900.v1.1
prunus_persica	Prupe.5G208400_v2.0.a1 Prupe.5G208400_v2.0.a1 Prupe.5G208400_v2.0.a1
pyrus_communis	pycom06g18250 pycom06g18260 pycom14g17840 pycom17g06530
rosa_chinensis	RchiOBHm_Chr7g0183521
rosa_laevigata	RLG00000005043
rosa_multiflora	Rmu_sc0003610.1_g000001 Rmu_sc0015926.1_g000005
rosa_roxburghii	Rroxscaffold_3G00270410
rosa_rugosa	Rorug06G0458200
rosa_samantha	Rh7AG059400 Rh7BG059200 Rh7CG061000 Rh7DG059600
rosa_wichuraiana	Rw7G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	312
Acc36I	ACCTGC	1 cut(s)	256
AccB7I	CCANNNNNTGG	1 cut(s)	631
AcoI	YGGCCR	4 cut(s)	148, 351, 565, 571
AcsI	RAATTY	1 cut(s)	167
AcuI	CTGAAG	1 cut(s)	44
AcyI	GRCGYC	2 cut(s)	237, 309
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	4 cut(s)	340, 507, 631, 635
AgsI	TTSAA	4 cut(s)	203, 409, 464, 488
AjnI	CCWGG	1 cut(s)	231
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	3 cut(s)	251, 290, 392
AoxI	GGCC	4 cut(s)	148, 351, 565, 571
ApeKI	GCWGC	3 cut(s)	82, 289, 560
ApoI	RAATTY	1 cut(s)	167
BalI	TGGCCA	3 cut(s)	353, 567, 573
BanII	GRGCYC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	105
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	3 cut(s)	69, 301, 547
BccI	CCATC	1 cut(s)	633
BceAI	ACGGC	1 cut(s)	135
BciT130I	CCWGG	1 cut(s)	233
BclI	TGATCA	1 cut(s)	445
BcoDI	GTCTC	3 cut(s)	251, 290, 392
BfaI	CTAG	2 cut(s)	174, 482
BfuAI	ACCTGC	1 cut(s)	256
BisI	GCNGC	3 cut(s)	83, 290, 561
BlsI	GCNGC	3 cut(s)	84, 291, 562
Bme1390I	CCNGG	1 cut(s)	233
BmrFI	CCNGG	1 cut(s)	233
BmsI	GCATC	3 cut(s)	109, 206, 397
BpmI	CTGGAG	2 cut(s)	314, 416
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	4 cut(s)	71, 395, 404, 523
BsaHI	GRCGYC	2 cut(s)	237, 309
BsaI	GGTCTC	1 cut(s)	392
BsaJI	CCNNGG	4 cut(s)	151, 231, 252, 568
Bsc4I	CCNNNNNNNGG	4 cut(s)	340, 507, 631, 635
Bse1I	ACTGG	1 cut(s)	399
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	4 cut(s)	151, 231, 252, 568
BseGI	GGATG	1 cut(s)	625
BseLI	CCNNNNNNNGG	4 cut(s)	340, 507, 631, 635
BseMII	CTCAG	4 cut(s)	114, 120, 275, 624
BseNI	ACTGG	1 cut(s)	399
BseRI	GAGGAG	2 cut(s)	392, 520
BseXI	GCAGC	3 cut(s)	69, 301, 547
BshFI	GGCC	4 cut(s)	150, 353, 567, 573
BsiHKAI	GWGCWC	1 cut(s)	105
BslI	CCNNNNNNNGG	4 cut(s)	340, 507, 631, 635
BsmAI	GTCTC	3 cut(s)	251, 290, 392
BsnI	GGCC	4 cut(s)	150, 353, 567, 573
Bso31I	GGTCTC	1 cut(s)	392
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	445, 457
Bsp19I	CCATGG	1 cut(s)	568
BspANI	GGCC	4 cut(s)	150, 353, 567, 573
BspCNI	CTCAG	4 cut(s)	115, 119, 274, 623
BspMI	ACCTGC	1 cut(s)	256
BspTNI	GGTCTC	1 cut(s)	392
BsrI	ACTGG	1 cut(s)	399
BssECI	CCNNGG	4 cut(s)	151, 231, 252, 568
BssMI	GATC	2 cut(s)	445, 457
BssNI	GRCGYC	2 cut(s)	237, 309
BssT1I	CCWWGG	2 cut(s)	252, 568
Bst2UI	CCWGG	1 cut(s)	233
Bst6I	CTCTTC	1 cut(s)	20
BstACI	GRCGYC	2 cut(s)	237, 309
BstC8I	GCNNGC	2 cut(s)	534, 565
BstDEI	CTNAG	4 cut(s)	106, 123, 261, 610
BstDSI	CCRYGG	2 cut(s)	151, 568
BstENI	CCTNNNNNAGG	2 cut(s)	505, 633
BstF5I	GGATG	1 cut(s)	625
BstKTI	GATC	2 cut(s)	448, 460
BstMAI	GTCTC	3 cut(s)	251, 290, 392
BstMBI	GATC	2 cut(s)	445, 457
BstMWI	GCNNNNNNNGC	7 cut(s)	128, 183, 379, 448, 497, 557, 595
BstNI	CCWGG	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	231
BstV1I	GCAGC	3 cut(s)	69, 301, 547
BstXI	CCANNNNNNTGG	2 cut(s)	581, 662
BsuRI	GGCC	4 cut(s)	150, 353, 567, 573
BtgI	CCRYGG	2 cut(s)	151, 568
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	625
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	2 cut(s)	534, 565
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	3 cut(s)	187, 569, 682
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	4 cut(s)	106, 123, 261, 610
DpnI	GATC	2 cut(s)	447, 459
DpnII	GATC	2 cut(s)	445, 457
EaeI	YGGCCR	4 cut(s)	148, 351, 565, 571
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	2 cut(s)	252, 568
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	392
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	44
EcoICRI	GAGCTC	1 cut(s)	103
EcoNI	CCTNNNNNAGG	2 cut(s)	505, 633
EcoRI	GAATTC	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	231
EcoT14I	CCWWGG	2 cut(s)	252, 568
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	2 cut(s)	252, 568
FaeI	CATG	3 cut(s)	190, 572, 685
FaiI	YATR	9 cut(s)	165, 188, 225, 440, 548, 570, 669, 683, 703
FatI	CATG	3 cut(s)	186, 568, 681
FbaI	TGATCA	1 cut(s)	445
Fnu4HI	GCNGC	3 cut(s)	83, 290, 561
FokI	GGATG	1 cut(s)	612
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	3 cut(s)	83, 290, 561
FspBI	CTAG	2 cut(s)	174, 482
GluI	GCNGC	3 cut(s)	83, 290, 561
GsuI	CTGGAG	2 cut(s)	314, 416
HaeIII	GGCC	4 cut(s)	150, 353, 567, 573
HgaI	GACGC	1 cut(s)	245
Hin1I	GRCGYC	2 cut(s)	237, 309
Hin1II	CATG	3 cut(s)	190, 572, 685
HincII	GTYRAC	2 cut(s)	307, 423
HindII	GTYRAC	2 cut(s)	307, 423
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	2 cut(s)	259, 430
Hpy166II	GTNNAC	3 cut(s)	307, 423, 699
Hpy188I	TCNGA	2 cut(s)	457, 613
Hpy188III	TCNNGA	2 cut(s)	88, 278
Hpy8I	GTNNAC	3 cut(s)	307, 423, 699
HpyAV	CCTTC	3 cut(s)	344, 612, 628
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	5 cut(s)	219, 289, 532, 671, 685
HpyF10VI	GCNNNNNNNGC	7 cut(s)	128, 183, 379, 448, 497, 557, 595
HpyF3I	CTNAG	4 cut(s)	106, 123, 261, 610
HpySE526I	ACGT	1 cut(s)	309
Hsp92I	GRCGYC	2 cut(s)	237, 309
Hsp92II	CATG	3 cut(s)	190, 572, 685
Ksp22I	TGATCA	1 cut(s)	445
Kzo9I	GATC	2 cut(s)	445, 457
LmnI	GCTCC	3 cut(s)	370, 379, 541
Lsp1109I	GCAGC	3 cut(s)	69, 301, 547
LweI	GCATC	3 cut(s)	109, 206, 397
MaeI	CTAG	2 cut(s)	174, 482
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	2 cut(s)	44, 55
MalI	GATC	2 cut(s)	447, 459
MboI	GATC	2 cut(s)	445, 457
MboII	GAAGA	6 cut(s)	37, 84, 356, 452, 530, 613
MhlI	GDGCHC	1 cut(s)	105
MlsI	TGGCCA	3 cut(s)	353, 567, 573
MluCI	AATT	4 cut(s)	167, 434, 542, 657
MluNI	TGGCCA	3 cut(s)	353, 567, 573
MlyI	GAGTC	2 cut(s)	253, 424
MmeI	TCCRAC	2 cut(s)	340, 630
MnlI	CCTC	9 cut(s)	21, 118, 143, 323, 370, 412, 498, 501, 629
Mox20I	TGGCCA	3 cut(s)	353, 567, 573
MscI	TGGCCA	3 cut(s)	353, 567, 573
MseI	TTAA	1 cut(s)	182
MslI	CAYNNNNRTG	1 cut(s)	579
Msp20I	TGGCCA	3 cut(s)	353, 567, 573
MspA1I	CMGCKG	1 cut(s)	292
MspR9I	CCNGG	1 cut(s)	233
MvaI	CCWGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	7 cut(s)	128, 183, 379, 448, 497, 557, 595
NcoI	CCATGG	1 cut(s)	568
NdeII	GATC	2 cut(s)	445, 457
NlaIII	CATG	3 cut(s)	190, 572, 685
NmuCI	GTSAC	1 cut(s)	55
PflMI	CCANNNNNTGG	1 cut(s)	631
PkrI	GCNGC	3 cut(s)	84, 291, 562
PleI	GAGTC	2 cut(s)	253, 424
PpsI	GAGTC	2 cut(s)	253, 424
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PvuII	CAGCTG	1 cut(s)	292
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	579
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	3 cut(s)	83, 290, 561
Sau3AI	GATC	2 cut(s)	445, 457
SchI	GAGTC	2 cut(s)	253, 424
ScrFI	CCNGG	1 cut(s)	233
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	3 cut(s)	109, 206, 397
SmiMI	CAYNNNNRTG	1 cut(s)	579
SmlI	CTYRAG	4 cut(s)	86, 374, 383, 502
SmoI	CTYRAG	4 cut(s)	86, 374, 383, 502
Sse9I	AATT	4 cut(s)	167, 434, 542, 657
SspMI	CTAG	2 cut(s)	174, 482
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	231
StyI	CCWWGG	2 cut(s)	252, 568
TaiI	ACGT	1 cut(s)	312
TasI	AATT	4 cut(s)	167, 434, 542, 657
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	82, 289, 560
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	180, 206
TspGWI	ACGGA	1 cut(s)	485
Van91I	CCANNNNNTGG	1 cut(s)	631
XagI	CCTNNNNNAGG	2 cut(s)	505, 633
XapI	RAATTY	1 cut(s)	167
XspI	CTAG	2 cut(s)	174, 482
ZraI	GACGTC	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.