Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006987

Physical Location & Seq

Genomic Coordinates Forward (+)

22061680 .. 22066722

Gene Structure 5043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g18250.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGGCAGAGGTAAAGTTGAGCTGAAGAGGATAGAGAATAAAAGTAACAGGCAAGTGACTTTTTCCAAGAGAAGAAATGGGCTGCTCAAGAAAGCTTTTGAGCTCTCAGTTCTCTGCGATGCTGAGGTTGCCCTCATTATTTTCTCTGGCCGTGGCAAGCTCTATGAATTCTCAAGCAGTTTAAGCATGATGAAAACGCTTGAAAAGTACCAAAGATGCAGTTATAGTTCCGTGGACGCCAACCGACCAGCCAACGGGAGTCAGAACAGCTATCAGGAGTATTTGCAGCTGGAGACAAGAGTTGAGGTCCTCCAACAATCTCAAAGAAACCTTCTTGGGGAAGATTTGGCCACCCTGAACAAAAAGGAGCTTGAGGAGCTTGAGCATCAACTGGAGACCTCCTTGAACAAAATTAGGTCAACAAAGACTCAATTTATGCTTGATCAGCTTTCTGATCTTCAAAACAGGGAACAAATGCTAGTTGAAGCTAACAAAGCCTTGAGGAGGAAGCTGGAAGAAACAAGTGAGCAAGCTCCACAATTTATGGCATGGGAAGCTGCTGGCCATGGCCACAACAATATTCAGCAAACTTGGCTTCCTTCCAACTCAGAAGCCTTCTTCCATCCCTTGGGAGGAAACAACTCCACTTACCAAATTGGATGCACCCATTTGGGTTCACATAATGGAATGAATGTTGGAAATCCGGGCCAGCATGATAATGGATACATTCCTGGGTGGATGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0046983 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

249

Amino Acids

28.21

Weight (kDa)

7.75

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006987)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g13510 FvH4_5g13510 FvH4_5g13510
malus_domestica	MD06G1204100.v1.1 MD06G1204300.v1.1 MD14G1215600.v1.1 MD16G1121900.v1.1
prunus_persica	Prupe.5G208400_v2.0.a1 Prupe.5G208400_v2.0.a1 Prupe.5G208400_v2.0.a1
pyrus_communis	pycom06g18250 pycom06g18260 pycom14g17840 pycom17g06530
rosa_chinensis	RchiOBHm_Chr7g0183521
rosa_laevigata	RLG00000005043
rosa_multiflora	Rmu_sc0003610.1_g000001 Rmu_sc0015926.1_g000005
rosa_roxburghii	Rroxscaffold_3G00270410
rosa_rugosa	Rorug06G0458200
rosa_samantha	Rh7AG059400 Rh7BG059200 Rh7CG061000 Rh7DG059600
rosa_wichuraiana	Rw7G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	628
AcoI	YGGCCR	4 cut(s)	148, 348, 562, 568
AcsI	RAATTY	1 cut(s)	167
AcuI	CTGAAG	1 cut(s)	44
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	5 cut(s)	254, 337, 504, 628, 632
AgsI	TTSAA	4 cut(s)	203, 406, 461, 485
AjnI	CCWGG	1 cut(s)	730
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	287, 389
AoxI	GGCC	5 cut(s)	148, 348, 562, 568, 706
ApeKI	GCWGC	3 cut(s)	82, 286, 557
ApoI	RAATTY	1 cut(s)	167
AspS9I	GGNCC	2 cut(s)	307, 706
AsuC2I	CCSGG	1 cut(s)	705
AvaII	GGWCC	1 cut(s)	307
BalI	TGGCCA	3 cut(s)	350, 564, 570
BanII	GRGCYC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	105
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	3 cut(s)	69, 298, 544
BccI	CCATC	1 cut(s)	630
BceAI	ACGGC	1 cut(s)	135
BciT130I	CCWGG	1 cut(s)	732
BciVI	GTATCC	1 cut(s)	716
BclI	TGATCA	1 cut(s)	442
BcnI	CCSGG	1 cut(s)	705
BcoDI	GTCTC	2 cut(s)	287, 389
BfaI	CTAG	1 cut(s)	479
BfuI	GTATCC	1 cut(s)	716
BisI	GCNGC	3 cut(s)	83, 287, 558
BlsI	GCNGC	3 cut(s)	84, 288, 559
Bme1390I	CCNGG	2 cut(s)	705, 732
Bme18I	GGWCC	1 cut(s)	307
BmgT120I	GGNCC	2 cut(s)	307, 706
BmrFI	CCNGG	2 cut(s)	705, 732
BmsI	GCATC	5 cut(s)	109, 206, 394, 650, 729
BpmI	CTGGAG	2 cut(s)	311, 413
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	5 cut(s)	71, 157, 392, 401, 520
BpuMI	CCSGG	1 cut(s)	705
BsaHI	GRCGYC	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	389
BsaJI	CCNNGG	5 cut(s)	151, 231, 565, 627, 731
Bsc4I	CCNNNNNNNGG	5 cut(s)	254, 337, 504, 628, 632
Bse1I	ACTGG	1 cut(s)	396
BseBI	CCWGG	1 cut(s)	732
BseDI	CCNNGG	5 cut(s)	151, 231, 565, 627, 731
BseGI	GGATG	3 cut(s)	622, 665, 744
BseLI	CCNNNNNNNGG	5 cut(s)	254, 337, 504, 628, 632
BseMII	CTCAG	3 cut(s)	114, 120, 621
BseNI	ACTGG	1 cut(s)	396
BseRI	GAGGAG	2 cut(s)	389, 517
BseXI	GCAGC	3 cut(s)	69, 298, 544
BshFI	GGCC	5 cut(s)	150, 350, 564, 570, 708
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	704
BslI	CCNNNNNNNGG	5 cut(s)	254, 337, 504, 628, 632
BsmAI	GTCTC	2 cut(s)	287, 389
BsnI	GGCC	5 cut(s)	150, 350, 564, 570, 708
Bso31I	GGTCTC	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	442, 454
Bsp19I	CCATGG	1 cut(s)	565
BspANI	GGCC	5 cut(s)	150, 350, 564, 570, 708
BspCNI	CTCAG	3 cut(s)	115, 119, 620
BspTNI	GGTCTC	1 cut(s)	389
BsrI	ACTGG	1 cut(s)	396
BssECI	CCNNGG	5 cut(s)	151, 231, 565, 627, 731
BssMI	GATC	2 cut(s)	442, 454
BssNI	GRCGYC	1 cut(s)	237
BssT1I	CCWWGG	2 cut(s)	565, 627
Bst2UI	CCWGG	1 cut(s)	732
Bst6I	CTCTTC	1 cut(s)	20
BstACI	GRCGYC	1 cut(s)	237
BstC8I	GCNNGC	4 cut(s)	158, 531, 562, 710
BstDEI	CTNAG	3 cut(s)	106, 123, 607
BstDSI	CCRYGG	3 cut(s)	151, 231, 565
BstENI	CCTNNNNNAGG	1 cut(s)	502
BstF5I	GGATG	3 cut(s)	622, 665, 744
BstKTI	GATC	2 cut(s)	445, 457
BstMAI	GTCTC	2 cut(s)	287, 389
BstMBI	GATC	2 cut(s)	442, 454
BstMWI	GCNNNNNNNGC	7 cut(s)	128, 183, 376, 445, 494, 554, 592
BstNI	CCWGG	1 cut(s)	732
BstSCI	CCNGG	2 cut(s)	703, 730
BstV1I	GCAGC	3 cut(s)	69, 298, 544
BsuI	GTATCC	1 cut(s)	716
BsuRI	GGCC	5 cut(s)	150, 350, 564, 570, 708
BtgI	CCRYGG	3 cut(s)	151, 231, 565
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	3 cut(s)	622, 665, 744
Cac8I	GCNNGC	4 cut(s)	158, 531, 562, 710
Cfr13I	GGNCC	2 cut(s)	307, 706
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	4 cut(s)	187, 549, 566, 713
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	3 cut(s)	106, 123, 607
DpnI	GATC	2 cut(s)	444, 456
DpnII	GATC	2 cut(s)	442, 454
EaeI	YGGCCR	4 cut(s)	148, 348, 562, 568
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	2 cut(s)	565, 627
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	389
Eco47I	GGWCC	1 cut(s)	307
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	44
EcoICRI	GAGCTC	1 cut(s)	103
EcoNI	CCTNNNNNAGG	1 cut(s)	502
EcoO109I	RGGNCCY	1 cut(s)	307
EcoRI	GAATTC	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	730
EcoT14I	CCWWGG	2 cut(s)	565, 627
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	2 cut(s)	565, 627
FaeI	CATG	4 cut(s)	190, 552, 569, 716
FaiI	YATR	9 cut(s)	165, 188, 225, 437, 545, 550, 567, 681, 714
FatI	CATG	4 cut(s)	186, 548, 565, 712
FbaI	TGATCA	1 cut(s)	442
Fnu4HI	GCNGC	3 cut(s)	83, 287, 558
FokI	GGATG	2 cut(s)	609, 672
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	3 cut(s)	83, 287, 558
FspBI	CTAG	1 cut(s)	479
GluI	GCNGC	3 cut(s)	83, 287, 558
GsuI	CTGGAG	2 cut(s)	311, 413
HaeIII	GGCC	5 cut(s)	150, 350, 564, 570, 708
HapII	CCGG	1 cut(s)	704
HgaI	GACGC	1 cut(s)	245
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	4 cut(s)	190, 552, 569, 716
HincII	GTYRAC	1 cut(s)	420
HindII	GTYRAC	1 cut(s)	420
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	2 cut(s)	259, 427
HpaII	CCGG	1 cut(s)	704
Hpy166II	GTNNAC	3 cut(s)	235, 420, 677
Hpy188I	TCNGA	3 cut(s)	264, 454, 610
Hpy188III	TCNNGA	2 cut(s)	88, 275
Hpy8I	GTNNAC	3 cut(s)	235, 420, 677
HpyAV	CCTTC	3 cut(s)	341, 609, 625
HpyCH4V	TGCA	3 cut(s)	219, 286, 663
HpyF10VI	GCNNNNNNNGC	7 cut(s)	128, 183, 376, 445, 494, 554, 592
HpyF3I	CTNAG	3 cut(s)	106, 123, 607
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	4 cut(s)	190, 552, 569, 716
Ksp22I	TGATCA	1 cut(s)	442
Kzo9I	GATC	2 cut(s)	442, 454
LmnI	GCTCC	3 cut(s)	367, 376, 538
Lsp1109I	GCAGC	3 cut(s)	69, 298, 544
LweI	GCATC	5 cut(s)	109, 206, 394, 650, 729
MaeI	CTAG	1 cut(s)	479
MaeIII	GTNAC	2 cut(s)	44, 55
MalI	GATC	2 cut(s)	444, 456
MboI	GATC	2 cut(s)	442, 454
MboII	GAAGA	6 cut(s)	37, 84, 353, 449, 527, 610
MhlI	GDGCHC	1 cut(s)	105
MlsI	TGGCCA	3 cut(s)	350, 564, 570
MluCI	AATT	5 cut(s)	167, 411, 431, 539, 654
MluNI	TGGCCA	3 cut(s)	350, 564, 570
MlyI	GAGTC	2 cut(s)	268, 421
MmeI	TCCRAC	3 cut(s)	337, 627, 676
Mox20I	TGGCCA	3 cut(s)	350, 564, 570
MscI	TGGCCA	3 cut(s)	350, 564, 570
MseI	TTAA	1 cut(s)	182
MslI	CAYNNNNRTG	1 cut(s)	717
Msp20I	TGGCCA	3 cut(s)	350, 564, 570
MspA1I	CMGCKG	1 cut(s)	289
MspI	CCGG	1 cut(s)	704
MspR9I	CCNGG	2 cut(s)	705, 732
MvaI	CCWGG	1 cut(s)	732
MwoI	GCNNNNNNNGC	7 cut(s)	128, 183, 376, 445, 494, 554, 592
NciI	CCSGG	1 cut(s)	705
NcoI	CCATGG	1 cut(s)	565
NdeII	GATC	2 cut(s)	442, 454
NlaIII	CATG	4 cut(s)	190, 552, 569, 716
NmuCI	GTSAC	1 cut(s)	55
PflMI	CCANNNNNTGG	1 cut(s)	628
PkrI	GCNGC	3 cut(s)	84, 288, 559
PleI	GAGTC	2 cut(s)	267, 421
PpsI	GAGTC	2 cut(s)	267, 421
PpuMI	RGGWCCY	1 cut(s)	307
Psp124BI	GAGCTC	1 cut(s)	105
Psp5II	RGGWCCY	1 cut(s)	307
Psp6I	CCWGG	1 cut(s)	730
PspGI	CCWGG	1 cut(s)	730
PspPI	GGNCC	2 cut(s)	307, 706
PspPPI	RGGWCCY	1 cut(s)	307
PvuII	CAGCTG	1 cut(s)	289
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	717
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	3 cut(s)	83, 287, 558
Sau3AI	GATC	2 cut(s)	442, 454
Sau96I	GGNCC	2 cut(s)	307, 706
SchI	GAGTC	2 cut(s)	268, 421
ScrFI	CCNGG	2 cut(s)	705, 732
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	5 cut(s)	109, 206, 394, 650, 729
SinI	GGWCC	1 cut(s)	307
SmiMI	CAYNNNNRTG	1 cut(s)	717
SmlI	CTYRAG	5 cut(s)	86, 172, 371, 380, 499
SmoI	CTYRAG	5 cut(s)	86, 172, 371, 380, 499
Sse9I	AATT	5 cut(s)	167, 411, 431, 539, 654
SspI	AATATT	1 cut(s)	580
SspMI	CTAG	1 cut(s)	479
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	2 cut(s)	703, 730
StyI	CCWWGG	2 cut(s)	565, 627
TasI	AATT	5 cut(s)	167, 411, 431, 539, 654
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	82, 286, 557
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	180, 206, 704
TspGWI	ACGGA	1 cut(s)	220
Van91I	CCANNNNNTGG	1 cut(s)	628
VpaK11BI	GGWCC	1 cut(s)	307
XagI	CCTNNNNNAGG	1 cut(s)	502
XapI	RAATTY	1 cut(s)	167
XcmI	CCANNNNNNNNNTGG	1 cut(s)	716
XspI	CTAG	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.