Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0006987

Physical Location & Seq

Genomic Coordinates Forward (+)

16620814 .. 16625385

Gene Structure 4572 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G208400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGGAAGAGGTAGAGTTGAGCTGAAGAGGATAGAGAATAAAATTAACAGGCAAGTGACTTTTGCCAAGAGAAGAAATGGGCTGCTCAAGAAAGCTTATGAGCTCTCAGTTCTCTGCGATGCTGAGGTTGCCCTCATAATTTTCTCCAGCCGTGGCAAACTTTATGAATTCTGCAGCAGTATGAGCATGCTGAAAACGCTTGAAAAGTACCAAAGGTGCAGCTATGGCTCCCTGGAAGCCAACAGACCAGTCAATGAGACCCAGAACAGCTATCAGGAATATCTGAAGCTGAAAGCTAGAGTGGAGGTCCTCCAACAATCTCAAAGAAACCTTCTTGGGGAAGATTTGGCCCCACTGAACACAAAGGAGCTTGAGCAGCTTGAGCATCAACTGGAGGCATCCTTGAACCAAATTAGGTCAACAAAGACTCAGTTTATGCTTGATCAGCTTTGTGATCTCCAGAACAAGGAACAAATGCTAGTTGAAGCTAACAAAGCCTTGAGGAGGAAGCTGGAAGAAACTAGTGGGCAAGCGCCACCTCTATTGGCATGGGAAGCTGCTGGCCATGGCAACAACAATGTTCAGCATACTGGCCTTCCTCATCATCCTCACTCACAAGGCTTCTTCCATCCATTGGGAAACAACTCCACTTCCCAAATTGGATACACCCCCTTGGGTTCAGATCATCATGAACAAATGAATGTTGGAAATCATGGCCAACATGTGAATGGATTCATTCCTGGGTGGATGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0046983 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

252

Amino Acids

28.53

Weight (kDa)

8.62

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006987)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g13510 FvH4_5g13510 FvH4_5g13510
malus_domestica	MD06G1204100.v1.1 MD06G1204300.v1.1 MD14G1215600.v1.1 MD16G1121900.v1.1
prunus_persica	Prupe.5G208400_v2.0.a1 Prupe.5G208400_v2.0.a1 Prupe.5G208400_v2.0.a1
pyrus_communis	pycom06g18250 pycom06g18260 pycom14g17840 pycom17g06530
rosa_chinensis	RchiOBHm_Chr7g0183521
rosa_laevigata	RLG00000005043
rosa_multiflora	Rmu_sc0003610.1_g000001 Rmu_sc0015926.1_g000005
rosa_roxburghii	Rroxscaffold_3G00270410
rosa_rugosa	Rorug06G0458200
rosa_samantha	Rh7AG059400 Rh7BG059200 Rh7CG061000 Rh7DG059600
rosa_wichuraiana	Rw7G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	634
AcoI	YGGCCR	2 cut(s)	562, 715
AcsI	RAATTY	1 cut(s)	167
AcuI	CTGAAG	2 cut(s)	44, 305
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	4 cut(s)	337, 466, 504, 634
AflIII	ACRYGT	1 cut(s)	721
AgsI	TTSAA	3 cut(s)	203, 406, 485
AhlI	ACTAGT	1 cut(s)	521
AjnI	CCWGG	2 cut(s)	231, 739
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	251
AoxI	GGCC	4 cut(s)	348, 562, 592, 715
ApeKI	GCWGC	5 cut(s)	82, 174, 219, 376, 557
ApoI	RAATTY	1 cut(s)	167
Asp700I	GAANNNNTTC	1 cut(s)	731
AspLEI	GCGC	1 cut(s)	535
AspS9I	GGNCC	2 cut(s)	307, 349
AvaII	GGWCC	1 cut(s)	307
BalI	TGGCCA	2 cut(s)	564, 717
BanII	GRGCYC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	105
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	5 cut(s)	69, 186, 231, 388, 544
BccI	CCATC	1 cut(s)	636
BceAI	ACGGC	1 cut(s)	135
BciT130I	CCWGG	2 cut(s)	233, 741
BciVI	GTATCC	1 cut(s)	656
BclI	TGATCA	1 cut(s)	442
BcoDI	GTCTC	1 cut(s)	251
BcuI	ACTAGT	1 cut(s)	521
BfaI	CTAG	3 cut(s)	297, 479, 522
BfmI	CTRYAG	1 cut(s)	172
BfoI	RGCGCY	1 cut(s)	536
BfuI	GTATCC	1 cut(s)	656
BisI	GCNGC	5 cut(s)	83, 175, 220, 377, 558
BlsI	GCNGC	5 cut(s)	84, 176, 221, 378, 559
Bme1390I	CCNGG	2 cut(s)	233, 741
Bme18I	GGWCC	1 cut(s)	307
BmgT120I	GGNCC	2 cut(s)	307, 349
BmiI	GGNNCC	2 cut(s)	229, 351
BmrFI	CCNGG	2 cut(s)	233, 741
BmsI	GCATC	4 cut(s)	109, 394, 407, 738
BpmI	CTGGAG	3 cut(s)	130, 413, 443
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	4 cut(s)	71, 392, 401, 520
BsaI	GGTCTC	1 cut(s)	251
BsaJI	CCNNGG	5 cut(s)	151, 231, 565, 672, 740
Bsc4I	CCNNNNNNNGG	4 cut(s)	337, 466, 504, 634
Bse1I	ACTGG	3 cut(s)	248, 396, 595
BseBI	CCWGG	2 cut(s)	233, 741
BseDI	CCNNGG	5 cut(s)	151, 231, 565, 672, 740
BseGI	GGATG	4 cut(s)	398, 604, 628, 753
BseLI	CCNNNNNNNGG	4 cut(s)	337, 466, 504, 634
BseMII	CTCAG	3 cut(s)	114, 120, 443
BseNI	ACTGG	3 cut(s)	248, 396, 595
BseRI	GAGGAG	1 cut(s)	517
BseXI	GCAGC	5 cut(s)	69, 186, 231, 388, 544
BsgI	GTGCAG	1 cut(s)	238
BshFI	GGCC	4 cut(s)	350, 564, 594, 717
BsiHKAI	GWGCWC	1 cut(s)	105
BslI	CCNNNNNNNGG	4 cut(s)	337, 466, 504, 634
BsmAI	GTCTC	1 cut(s)	251
BsnI	GGCC	4 cut(s)	350, 564, 594, 717
Bso31I	GGTCTC	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	3 cut(s)	442, 454, 682
Bsp19I	CCATGG	1 cut(s)	565
BspANI	GGCC	4 cut(s)	350, 564, 594, 717
BspCNI	CTCAG	3 cut(s)	115, 119, 442
BspHI	TCATGA	1 cut(s)	688
BspLI	GGNNCC	2 cut(s)	229, 351
BspMAI	CTGCAG	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	251
BsrI	ACTGG	3 cut(s)	248, 396, 595
BssECI	CCNNGG	5 cut(s)	151, 231, 565, 672, 740
BssMI	GATC	3 cut(s)	442, 454, 682
BssT1I	CCWWGG	2 cut(s)	565, 672
Bst2UI	CCWGG	2 cut(s)	233, 741
Bst6I	CTCTTC	1 cut(s)	20
BstC8I	GCNNGC	3 cut(s)	188, 531, 562
BstDEI	CTNAG	3 cut(s)	106, 123, 429
BstDSI	CCRYGG	2 cut(s)	151, 565
BstENI	CCTNNNNNAGG	1 cut(s)	502
BstF5I	GGATG	4 cut(s)	398, 604, 628, 753
BstH2I	RGCGCY	1 cut(s)	536
BstHHI	GCGC	1 cut(s)	535
BstKTI	GATC	3 cut(s)	445, 457, 685
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	3 cut(s)	442, 454, 682
BstMWI	GCNNNNNNNGC	9 cut(s)	128, 183, 196, 225, 376, 382, 445, 494, 554
BstNI	CCWGG	2 cut(s)	233, 741
BstNSI	RCATGY	2 cut(s)	190, 725
BstSCI	CCNGG	2 cut(s)	231, 739
BstSFI	CTRYAG	1 cut(s)	172
BstV1I	GCAGC	5 cut(s)	69, 186, 231, 388, 544
BsuI	GTATCC	1 cut(s)	656
BsuRI	GGCC	4 cut(s)	350, 564, 594, 717
BtgI	CCRYGG	2 cut(s)	151, 565
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	4 cut(s)	398, 604, 628, 753
BtsIMutI	CAGTG	1 cut(s)	353
Cac8I	GCNNGC	3 cut(s)	188, 531, 562
CciI	TCATGA	1 cut(s)	688
CfoI	GCGC	1 cut(s)	535
Cfr13I	GGNCC	2 cut(s)	307, 349
Csp6I	GTAC	1 cut(s)	208
CspCI	CAANNNNNGTGG	2 cut(s)	525, 560
CviAII	CATG	6 cut(s)	187, 549, 566, 689, 713, 722
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	3 cut(s)	106, 123, 429
DpnI	GATC	3 cut(s)	444, 456, 684
DpnII	GATC	3 cut(s)	442, 454, 682
EaeI	YGGCCR	2 cut(s)	562, 715
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	2 cut(s)	565, 672
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	251
Eco47I	GGWCC	1 cut(s)	307
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	2 cut(s)	44, 305
EcoICRI	GAGCTC	1 cut(s)	103
EcoNI	CCTNNNNNAGG	1 cut(s)	502
EcoO109I	RGGNCCY	1 cut(s)	307
EcoRI	GAATTC	1 cut(s)	167
EcoRII	CCWGG	2 cut(s)	231, 739
EcoT14I	CCWWGG	2 cut(s)	565, 672
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	2 cut(s)	565, 672
FaeI	CATG	6 cut(s)	190, 552, 569, 692, 716, 725
FatI	CATG	6 cut(s)	186, 548, 565, 688, 712, 721
FbaI	TGATCA	1 cut(s)	442
Fnu4HI	GCNGC	5 cut(s)	83, 175, 220, 377, 558
FokI	GGATG	3 cut(s)	385, 591, 615
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	5 cut(s)	83, 175, 220, 377, 558
FspBI	CTAG	3 cut(s)	297, 479, 522
GlaI	GCGC	1 cut(s)	534
GluI	GCNGC	5 cut(s)	83, 175, 220, 377, 558
GsuI	CTGGAG	3 cut(s)	130, 413, 443
HaeII	RGCGCY	1 cut(s)	536
HaeIII	GGCC	4 cut(s)	350, 564, 594, 717
HhaI	GCGC	1 cut(s)	535
Hin1II	CATG	6 cut(s)	190, 552, 569, 692, 716, 725
Hin6I	GCGC	1 cut(s)	533
HinP1I	GCGC	1 cut(s)	533
HincII	GTYRAC	1 cut(s)	420
HindII	GTYRAC	1 cut(s)	420
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	2 cut(s)	427, 732
Hpy166II	GTNNAC	1 cut(s)	420
Hpy188I	TCNGA	2 cut(s)	285, 682
Hpy188III	TCNNGA	4 cut(s)	88, 275, 460, 689
Hpy8I	GTNNAC	1 cut(s)	420
HpyAV	CCTTC	2 cut(s)	341, 605
HpyCH4V	TGCA	2 cut(s)	174, 219
HpyF10VI	GCNNNNNNNGC	9 cut(s)	128, 183, 196, 225, 376, 382, 445, 494, 554
HpyF3I	CTNAG	3 cut(s)	106, 123, 429
Hsp92II	CATG	6 cut(s)	190, 552, 569, 692, 716, 725
HspAI	GCGC	1 cut(s)	533
Ksp22I	TGATCA	1 cut(s)	442
Kzo9I	GATC	3 cut(s)	442, 454, 682
LmnI	GCTCC	2 cut(s)	233, 367
Lsp1109I	GCAGC	5 cut(s)	69, 186, 231, 388, 544
LweI	GCATC	4 cut(s)	109, 394, 407, 738
MaeI	CTAG	3 cut(s)	297, 479, 522
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	3 cut(s)	444, 456, 684
MboI	GATC	3 cut(s)	442, 454, 682
MboII	GAAGA	6 cut(s)	18, 37, 84, 353, 527, 616
MhlI	GDGCHC	1 cut(s)	105
MlsI	TGGCCA	2 cut(s)	564, 717
MluCI	AATT	5 cut(s)	42, 138, 167, 411, 657
MluNI	TGGCCA	2 cut(s)	564, 717
MlyI	GAGTC	1 cut(s)	421
MmeI	TCCRAC	2 cut(s)	337, 685
Mox20I	TGGCCA	2 cut(s)	564, 717
MroXI	GAANNNNTTC	1 cut(s)	731
MscI	TGGCCA	2 cut(s)	564, 717
MseI	TTAA	1 cut(s)	45
MslI	CAYNNNNRTG	1 cut(s)	726
Msp20I	TGGCCA	2 cut(s)	564, 717
MspR9I	CCNGG	2 cut(s)	233, 741
MvaI	CCWGG	2 cut(s)	233, 741
MwoI	GCNNNNNNNGC	9 cut(s)	128, 183, 196, 225, 376, 382, 445, 494, 554
NcoI	CCATGG	1 cut(s)	565
NdeII	GATC	3 cut(s)	442, 454, 682
NlaIII	CATG	6 cut(s)	190, 552, 569, 692, 716, 725
NlaIV	GGNNCC	2 cut(s)	229, 351
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	2 cut(s)	190, 725
PaeI	GCATGC	1 cut(s)	190
PagI	TCATGA	1 cut(s)	688
PciI	ACATGT	1 cut(s)	721
PdmI	GAANNNNTTC	1 cut(s)	731
PfeI	GAWTC	1 cut(s)	732
PflMI	CCANNNNNTGG	1 cut(s)	634
PkrI	GCNGC	5 cut(s)	84, 176, 221, 378, 559
PleI	GAGTC	1 cut(s)	421
PpsI	GAGTC	1 cut(s)	421
PpuMI	RGGWCCY	1 cut(s)	307
PscI	ACATGT	1 cut(s)	721
Psp124BI	GAGCTC	1 cut(s)	105
Psp5II	RGGWCCY	1 cut(s)	307
Psp6I	CCWGG	2 cut(s)	231, 739
PspGI	CCWGG	2 cut(s)	231, 739
PspN4I	GGNNCC	2 cut(s)	229, 351
PspPI	GGNCC	2 cut(s)	307, 349
PspPPI	RGGWCCY	1 cut(s)	307
PstI	CTGCAG	1 cut(s)	176
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	726
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	5 cut(s)	83, 175, 220, 377, 558
Sau3AI	GATC	3 cut(s)	442, 454, 682
Sau96I	GGNCC	2 cut(s)	307, 349
SchI	GAGTC	1 cut(s)	421
ScrFI	CCNGG	2 cut(s)	233, 741
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	4 cut(s)	109, 394, 407, 738
SfcI	CTRYAG	1 cut(s)	172
SinI	GGWCC	1 cut(s)	307
SmiMI	CAYNNNNRTG	1 cut(s)	726
SmlI	CTYRAG	4 cut(s)	86, 371, 380, 499
SmoI	CTYRAG	4 cut(s)	86, 371, 380, 499
SpeI	ACTAGT	1 cut(s)	521
SphI	GCATGC	1 cut(s)	190
Sse9I	AATT	5 cut(s)	42, 138, 167, 411, 657
SspMI	CTAG	3 cut(s)	297, 479, 522
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	2 cut(s)	231, 739
StyI	CCWWGG	2 cut(s)	565, 672
TasI	AATT	5 cut(s)	42, 138, 167, 411, 657
TfiI	GAWTC	1 cut(s)	732
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	1 cut(s)	360
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	5 cut(s)	82, 174, 219, 376, 557
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	4 cut(s)	180, 705, 713, 724
TspRI	CASTG	1 cut(s)	360
Van91I	CCANNNNNTGG	1 cut(s)	634
VpaK11BI	GGWCC	1 cut(s)	307
XagI	CCTNNNNNAGG	1 cut(s)	502
XapI	RAATTY	1 cut(s)	167
XceI	RCATGY	2 cut(s)	190, 725
XcmI	CCANNNNNNNNNTGG	1 cut(s)	725
XmnI	GAANNNNTTC	1 cut(s)	731
XspI	CTAG	3 cut(s)	297, 479, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.