Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006987

Physical Location & Seq

Genomic Coordinates Forward (+)

4377830 .. 4384707

Gene Structure 6878 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16374

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGGGAGAGGAAGAGTTGAGCTCAAGAGAATAGAGAATAAAATCAACAGGCAAGTCACTTTTGCCAAGAGAAGAAATGGCCTGCTCAAGAAAGCTTATGAGCTCTCAGTTCTCTGTGATGCTGAGGTTGCCCTCATTATTTTCTCTGGCCGTGGAAAGCTCTATGAGTTCTGCAGCAGCTTAAGCATGATGAAAACGCTGGAAAAGTACCATAGGTGCAATTATGGTGCCCTCGAAGCCAACCAACCTGTAAACGAGACTCAGCAGAACAGTTATCAGGAATATTTGAAGCTTAAAGCAAGAGTGGAGGTCCTCCAACGATCTCAGAGAAACCTTCTTGGGGAAGATTTGGGCCCACTGAACACGAAGGAGCTTGAGCAGCTTGAGCATCAACTAGAGTCATCCCTGAAGCATATTAGGTCAACAAAGACTCAGTTTATGCTGGATGAGCTTTCTGATCTCCAAAACAGGGAACAAATGCTTGTTGAAACTAATAAATCCTTAAGGAGGAAGCTGGAAGAAACTAATCTGCAAGGTGCTCCACTTCGTCTGGCATGGGACGGTGGCTATGGCCAGAACAACATTCATCAGCACAACAACCGTCTTCCTCCCCAGTCGCAAGGTTTGTTTCAGCCACTGCAAGGAAACAACACCTCCGCTTTGCAAATCGGATACACTCCGCTGAGCTCAGATCATCATCACCAGATGAATGCAGGAAATCCAGGCCAAAATGTCAATGGATTCATTCCTGGGTGGATGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0046983 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

254

Amino Acids

29.1

Weight (kDa)

9.2

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	4.5e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	86 - 173	3.7e-29	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006987)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g13510 FvH4_5g13510 FvH4_5g13510
malus_domestica	MD06G1204100.v1.1 MD06G1204300.v1.1 MD14G1215600.v1.1 MD16G1121900.v1.1
prunus_persica	Prupe.5G208400_v2.0.a1 Prupe.5G208400_v2.0.a1 Prupe.5G208400_v2.0.a1
pyrus_communis	pycom06g18250 pycom06g18260 pycom14g17840 pycom17g06530
rosa_chinensis	RchiOBHm_Chr7g0183521
rosa_laevigata	RLG00000005043
rosa_multiflora	Rmu_sc0003610.1_g000001 Rmu_sc0015926.1_g000005
rosa_roxburghii	Rroxscaffold_3G00270410
rosa_rugosa	Rorug06G0458200
rosa_samantha	Rh7AG059400 Rh7BG059200 Rh7CG061000 Rh7DG059600
rosa_wichuraiana	Rw7G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	227
AciI	CCGC	2 cut(s)	657, 680
AcoI	YGGCCR	2 cut(s)	148, 571
AcuI	CTGAAG	1 cut(s)	428
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	4 cut(s)	340, 469, 507, 641
AflII	CTTAAG	2 cut(s)	181, 502
AgsI	TTSAA	2 cut(s)	289, 488
AjnI	CCWGG	2 cut(s)	721, 748
Alw21I	GWGCWC	4 cut(s)	24, 105, 541, 689
Alw26I	GTCTC	1 cut(s)	251
AlwNI	CAGNNNCTG	1 cut(s)	637
AoxI	GGCC	5 cut(s)	79, 148, 352, 571, 724
ApaI	GGGCCC	1 cut(s)	356
ApeKI	GCWGC	3 cut(s)	174, 177, 379
AspS9I	GGNCC	3 cut(s)	310, 352, 353
AsuHPI	GGTGA	1 cut(s)	692
AvaII	GGWCC	1 cut(s)	310
BaeGI	GKGCMC	2 cut(s)	232, 356
BalI	TGGCCA	1 cut(s)	573
BanI	GGYRCC	1 cut(s)	227
BanII	GRGCYC	4 cut(s)	24, 105, 356, 689
BbsI	GAAGAC	1 cut(s)	596
Bbv12I	GWGCWC	4 cut(s)	24, 105, 541, 689
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	3 cut(s)	186, 189, 391
BceAI	ACGGC	1 cut(s)	135
BciT130I	CCWGG	2 cut(s)	723, 750
BciVI	GTATCC	1 cut(s)	665
BcoDI	GTCTC	1 cut(s)	251
BfaI	CTAG	1 cut(s)	395
BfmI	CTRYAG	1 cut(s)	172
BfrI	CTTAAG	2 cut(s)	181, 502
BfuI	GTATCC	1 cut(s)	665
BisI	GCNGC	3 cut(s)	175, 178, 380
BlpI	GCTNAGC	1 cut(s)	683
BlsI	GCNGC	3 cut(s)	176, 179, 381
Bme1390I	CCNGG	2 cut(s)	723, 750
Bme18I	GGWCC	1 cut(s)	310
BmgT120I	GGNCC	3 cut(s)	310, 352, 353
BmiI	GGNNCC	2 cut(s)	229, 354
BmrFI	CCNGG	2 cut(s)	723, 750
BmrI	ACTGGG	1 cut(s)	607
BmsI	GCATC	3 cut(s)	109, 397, 747
BmuI	ACTGGG	1 cut(s)	607
BpiI	GAAGAC	1 cut(s)	596
BplI	GAGNNNNNCTC	1 cut(s)	38
Bpu10I	CCTNAGC	1 cut(s)	123
Bpu1102I	GCTNAGC	1 cut(s)	683
BpuEI	CTTGAG	4 cut(s)	8, 71, 395, 404
BsaBI	GATNNNNATC	1 cut(s)	696
BsaJI	CCNNGG	2 cut(s)	151, 749
BsaXI	ACNNNNNCTCC	2 cut(s)	638, 668
Bsc4I	CCNNNNNNNGG	4 cut(s)	340, 469, 507, 641
Bse1I	ACTGG	1 cut(s)	613
Bse8I	GATNNNNATC	1 cut(s)	696
BseBI	CCWGG	2 cut(s)	723, 750
BseDI	CCNNGG	2 cut(s)	151, 749
BseGI	GGATG	3 cut(s)	401, 451, 762
BseJI	GATNNNNATC	1 cut(s)	696
BseLI	CCNNNNNNNGG	4 cut(s)	340, 469, 507, 641
BseMII	CTCAG	7 cut(s)	114, 120, 275, 338, 446, 674, 702
BseNI	ACTGG	1 cut(s)	613
BseSI	GKGCMC	2 cut(s)	232, 356
BseXI	GCAGC	3 cut(s)	186, 189, 391
BshFI	GGCC	5 cut(s)	81, 150, 354, 573, 726
BshNI	GGYRCC	1 cut(s)	227
BsiHKAI	GWGCWC	4 cut(s)	24, 105, 541, 689
BslFI	GGGAC	1 cut(s)	572
BslI	CCNNNNNNNGG	4 cut(s)	340, 469, 507, 641
BsmAI	GTCTC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	572
BsmI	GAATGC	1 cut(s)	715
BsnI	GGCC	5 cut(s)	81, 150, 354, 573, 726
Bsp120I	GGGCCC	1 cut(s)	352
Bsp1286I	GDGCHC	6 cut(s)	24, 105, 232, 356, 541, 689
Bsp143I	GATC	3 cut(s)	320, 457, 691
Bsp1720I	GCTNAGC	1 cut(s)	683
BspACI	CCGC	2 cut(s)	657, 680
BspANI	GGCC	5 cut(s)	81, 150, 354, 573, 726
BspCNI	CTCAG	7 cut(s)	115, 119, 274, 337, 445, 675, 701
BspLI	GGNNCC	2 cut(s)	229, 354
BspMAI	CTGCAG	1 cut(s)	176
BspT107I	GGYRCC	1 cut(s)	227
BspTI	CTTAAG	2 cut(s)	181, 502
BsrI	ACTGG	1 cut(s)	613
BssECI	CCNNGG	2 cut(s)	151, 749
BssMI	GATC	3 cut(s)	320, 457, 691
Bst2UI	CCWGG	2 cut(s)	723, 750
Bst4CI	ACNGT	3 cut(s)	272, 563, 602
Bst6I	CTCTTC	1 cut(s)	7
BstAFI	CTTAAG	2 cut(s)	181, 502
BstC8I	GCNNGC	1 cut(s)	83
BstDEI	CTNAG	7 cut(s)	106, 123, 261, 324, 432, 683, 688
BstDSI	CCRYGG	1 cut(s)	151
BstENI	CCTNNNNNAGG	1 cut(s)	505
BstF5I	GGATG	3 cut(s)	401, 451, 762
BstKTI	GATC	3 cut(s)	323, 460, 694
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	3 cut(s)	320, 457, 691
BstMWI	GCNNNNNNNGC	6 cut(s)	128, 183, 236, 379, 385, 448
BstNI	CCWGG	2 cut(s)	723, 750
BstSCI	CCNGG	2 cut(s)	721, 748
BstSFI	CTRYAG	1 cut(s)	172
BstSLI	GKGCMC	2 cut(s)	232, 356
BstV1I	GCAGC	3 cut(s)	186, 189, 391
BstV2I	GAAGAC	1 cut(s)	596
BsuI	GTATCC	1 cut(s)	665
BsuRI	GGCC	5 cut(s)	81, 150, 354, 573, 726
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	3 cut(s)	401, 451, 762
BtsI	GCAGTG	1 cut(s)	635
BtsIMutI	CAGTG	2 cut(s)	356, 635
Cac8I	GCNNGC	1 cut(s)	83
CaiI	CAGNNNCTG	1 cut(s)	637
Cfr13I	GGNCC	3 cut(s)	310, 352, 353
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	2 cut(s)	187, 555
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	7 cut(s)	106, 123, 261, 324, 432, 683, 688
DpnI	GATC	3 cut(s)	322, 459, 693
DpnII	GATC	3 cut(s)	320, 457, 691
EaeI	YGGCCR	2 cut(s)	148, 571
Eam1104I	CTCTTC	1 cut(s)	7
EarI	CTCTTC	1 cut(s)	7
Ecl136II	GAGCTC	3 cut(s)	22, 103, 687
Eco24I	GRGCYC	4 cut(s)	24, 105, 356, 689
Eco47I	GGWCC	1 cut(s)	310
Eco53kI	GAGCTC	3 cut(s)	22, 103, 687
Eco57I	CTGAAG	1 cut(s)	428
EcoICRI	GAGCTC	3 cut(s)	22, 103, 687
EcoNI	CCTNNNNNAGG	1 cut(s)	505
EcoO109I	RGGNCCY	1 cut(s)	310
EcoRII	CCWGG	2 cut(s)	721, 748
EcoT38I	GRGCYC	4 cut(s)	24, 105, 356, 689
FaeI	CATG	2 cut(s)	190, 558
FaiI	YATR	9 cut(s)	99, 165, 188, 213, 225, 414, 440, 556, 570
FaqI	GGGAC	1 cut(s)	572
FatI	CATG	2 cut(s)	186, 554
Fnu4HI	GCNGC	3 cut(s)	175, 178, 380
FokI	GGATG	2 cut(s)	388, 458
FriOI	GRGCYC	4 cut(s)	24, 105, 356, 689
Fsp4HI	GCNGC	3 cut(s)	175, 178, 380
FspBI	CTAG	1 cut(s)	395
GluI	GCNGC	3 cut(s)	175, 178, 380
HaeIII	GGCC	5 cut(s)	81, 150, 354, 573, 726
Hin1II	CATG	2 cut(s)	190, 558
HincII	GTYRAC	1 cut(s)	423
HindII	GTYRAC	1 cut(s)	423
HindIII	AAGCTT	2 cut(s)	93, 290
HinfI	GANTC	4 cut(s)	259, 398, 430, 741
HphI	GGTGA	1 cut(s)	692
Hpy166II	GTNNAC	2 cut(s)	253, 423
Hpy188I	TCNGA	4 cut(s)	327, 457, 671, 691
Hpy188III	TCNNGA	3 cut(s)	25, 88, 278
Hpy8I	GTNNAC	2 cut(s)	253, 423
HpyAV	CCTTC	2 cut(s)	344, 361
HpyCH4III	ACNGT	3 cut(s)	272, 563, 602
HpyCH4V	TGCA	6 cut(s)	174, 219, 532, 640, 664, 713
HpyF10VI	GCNNNNNNNGC	6 cut(s)	128, 183, 236, 379, 385, 448
HpyF3I	CTNAG	7 cut(s)	106, 123, 261, 324, 432, 683, 688
Hsp92II	CATG	2 cut(s)	190, 558
Kzo9I	GATC	3 cut(s)	320, 457, 691
LmnI	GCTCC	2 cut(s)	370, 544
Lsp1109I	GCAGC	3 cut(s)	186, 189, 391
LweI	GCATC	3 cut(s)	109, 397, 747
MaeI	CTAG	1 cut(s)	395
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	3 cut(s)	322, 459, 693
MboI	GATC	3 cut(s)	320, 457, 691
MboII	GAAGA	5 cut(s)	24, 84, 356, 530, 596
MhlI	GDGCHC	6 cut(s)	24, 105, 232, 356, 541, 689
MlsI	TGGCCA	1 cut(s)	573
MluCI	AATT	1 cut(s)	220
MluNI	TGGCCA	1 cut(s)	573
MlyI	GAGTC	3 cut(s)	253, 407, 424
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	8 cut(s)	118, 143, 242, 301, 323, 501, 618, 664
Mox20I	TGGCCA	1 cut(s)	573
MscI	TGGCCA	1 cut(s)	573
MseI	TTAA	3 cut(s)	182, 294, 503
Msp20I	TGGCCA	1 cut(s)	573
MspA1I	CMGCKG	1 cut(s)	682
MspCI	CTTAAG	2 cut(s)	181, 502
MspR9I	CCNGG	2 cut(s)	723, 750
Mva1269I	GAATGC	1 cut(s)	715
MvaI	CCWGG	2 cut(s)	723, 750
MwoI	GCNNNNNNNGC	6 cut(s)	128, 183, 236, 379, 385, 448
NdeII	GATC	3 cut(s)	320, 457, 691
NlaIII	CATG	2 cut(s)	190, 558
NlaIV	GGNNCC	2 cut(s)	229, 354
NmuCI	GTSAC	1 cut(s)	55
PctI	GAATGC	1 cut(s)	715
PfeI	GAWTC	1 cut(s)	741
PkrI	GCNGC	3 cut(s)	176, 179, 381
PleI	GAGTC	3 cut(s)	253, 406, 424
PpsI	GAGTC	3 cut(s)	253, 406, 424
PpuMI	RGGWCCY	1 cut(s)	310
Psp124BI	GAGCTC	3 cut(s)	24, 105, 689
Psp5II	RGGWCCY	1 cut(s)	310
Psp6I	CCWGG	2 cut(s)	721, 748
PspGI	CCWGG	2 cut(s)	721, 748
PspN4I	GGNNCC	2 cut(s)	229, 354
PspOMI	GGGCCC	1 cut(s)	352
PspPI	GGNCC	3 cut(s)	310, 352, 353
PspPPI	RGGWCCY	1 cut(s)	310
PstI	CTGCAG	1 cut(s)	176
PstNI	CAGNNNCTG	1 cut(s)	637
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SacI	GAGCTC	3 cut(s)	24, 105, 689
SaqAI	TTAA	3 cut(s)	182, 294, 503
SatI	GCNGC	3 cut(s)	175, 178, 380
Sau3AI	GATC	3 cut(s)	320, 457, 691
Sau96I	GGNCC	3 cut(s)	310, 352, 353
SchI	GAGTC	3 cut(s)	253, 407, 424
ScrFI	CCNGG	2 cut(s)	723, 750
SduI	GDGCHC	6 cut(s)	24, 105, 232, 356, 541, 689
SfaNI	GCATC	3 cut(s)	109, 397, 747
SfcI	CTRYAG	1 cut(s)	172
SinI	GGWCC	1 cut(s)	310
SmlI	CTYRAG	6 cut(s)	23, 86, 181, 374, 383, 502
SmoI	CTYRAG	6 cut(s)	23, 86, 181, 374, 383, 502
Sse9I	AATT	1 cut(s)	220
SsiI	CCGC	2 cut(s)	657, 680
SspI	AATATT	1 cut(s)	284
SspMI	CTAG	1 cut(s)	395
SstI	GAGCTC	3 cut(s)	24, 105, 689
StyD4I	CCNGG	2 cut(s)	721, 748
TaaI	ACNGT	3 cut(s)	272, 563, 602
TaqI	TCGA	1 cut(s)	234
TasI	AATT	1 cut(s)	220
TfiI	GAWTC	1 cut(s)	741
Tru1I	TTAA	3 cut(s)	182, 294, 503
Tru9I	TTAA	3 cut(s)	182, 294, 503
TscAI	CASTG	2 cut(s)	363, 642
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	174, 177, 379
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	4 cut(s)	206, 575, 722, 733
TspRI	CASTG	2 cut(s)	363, 642
Vha464I	CTTAAG	2 cut(s)	181, 502
VpaK11BI	GGWCC	1 cut(s)	310
XagI	CCTNNNNNAGG	1 cut(s)	505
XcmI	CCANNNNNNNNNTGG	1 cut(s)	734
XspI	CTAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.