FvH4_5g13771

Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0009976
Physical Location & Seq
Reverse (-)
7784184 .. 7788461
4278 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g13771.t4

Sequence Viewer

Length: 1821 bp
ATGGCCAAGCTTGGACCAACCCCAGATGCGATTTCGACGCTGTTGGCGAACCCATCGCCGGACGGATCCAGTCCGATCCCGGAGATCGTGGTCCAGATCCTCGATCTCAGACGTAACGGCAACCGTTATATGTTTACTGCTAGTGATGGGAAGATGAAGCTAAAGGGGATTCTCAACTCAGATATGAGTTCAATGGTTGACTCTGGGGATTTTCAGAACCTTAGCCTCGTTCGTATTCTTGAGTACACTGTTAATGACATTCCCGGCAAGCCTGAAAAATGTATGATTGTGATAAAATGTGAGATGGTTTCGCCTCCTCTTGAGGCGGAGATTGAGAGTGAGGTTAGTAAAAATGAGGTGAAAGGAGAGCAGGTTGGGATTATTTTGAAGCCCAAGCAAGAGATGGTGACTAAATCAGCCAATCAGATTATGCATGAGCAGAATGGAAATATGGCCCCGGCTGCACGAATGGCCATGACCAGAAGGGTTCATCCTATTGTGTCCTTGAATCCTTATCAAGGCAATTGGACTATAAAGGTTCGTGTAACAAACAAGGGACCCATGCGTACTTACACGAATGCTAGAGGTCAAGGCTGTGTTTTCAATGTGGAGTTAACAGATGAAGATGGAACTGAAATTCAAGCTACAATGTTCAATGAAGCTGCAAAGAAGTTTTTTGAAAAGTTTGAATTGGGGAAGGTTTACTATGTTTCAAAGGGGTCTCTAAAGCTGGCTAACAAGAAGTTTAGCACATTAAAAAATGATTATGAAATGACTTTAAATGAGAATTCTGAGGTGGATGAAGTCTGCAATGAAGAAGCTTTTGTTCCTGAAACAAAATTTGATTTTGTCCCAATTGATATGCTGGGCCCCCATGTTAACCAAAAGGTGCTAGTGGATGTTATTGGAGTTGTTACAAGTGTGTCTCCTACAATGAGTATTAGAAGGAAGAGCAACAATGAGAGTATCCCAAAGCGTGACATTACCATTGCTGATGAGTCGAAAAAAGTGGTTGTGGTTTCTTTATGGAATGATCTTGCAACTGGTGTTGGCCAGGAATTGCTGGACAAAGTCAATCAATCGCCTGTAGTCGCTATCAAATCCGTTAGAGTTGGAGACTATCAAGGTGTATCCTTGTCTACGGTGTCCAAGAGCTCAATAGTGGTGGATCCAGATTTACCTGAAGCAAAGAGGTTGAAATCCTGGTATGATTCTGAAGGTAAAGAGGTTTCAATGGCATCTGTTGGCTCTGGTATGAGCCCATCAGCCAATAGTGGAGCATGGTCCATGTACTCTGATAGAATCCCCCTGTCTCATTTGAAAGATAACCCATCCTTGGGAGAGGACAAGCCTGTGTTTTTCAGTGTTAAAGCTTATATAGGCCCCATCAAGTCTGATCAGACTCTCTGGTACCGGGCTTGCAAAGTATGCAACAAAAAGGTGACTGAAGGTGATGGGGGTTACTGGTGTGAAGGGTGCCAGAAAATTGCTGAAGAATGCAGTCTAAGGTATATATTACTTGCAAGAGCTATGGATGCAACTGGTGAAGTATATCTTTCAATGTTCAATAATGAAGCAGAGAAGATTATTGGGTGCTCTGCAGATGAGCTAGATAAATTGAGATCAGAGGAGGACAACGAGTACCAGCTGAAGTTGAAACAAGCTGCTTGGGTTCCTCATCTTTTCAGGGTCAGTGTTGTTCAGAATGAATACAATGACCAGAAGAGGCAAAGGGTAACTGCCAGGGCAGTTGCTCCACTTGATTTCGCTGCTGAATCCAAATATATGCTGGAAGAGATATCGAAGATGAAGGCCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000228 GO:0000278 GO:0000723 GO:0000724 GO:0000725 GO:0000781 GO:0000784 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005662 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006278 GO:0006279 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007004 GO:0007049 GO:0007063 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010224 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010638 GO:0010639 GO:0010833 GO:0010948 GO:0016043 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022402 GO:0022414 GO:0030894 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032392 GO:0032508 GO:0032879 GO:0032880 GO:0032991 GO:0032993 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035861 GO:0042162 GO:0042592 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044786 GO:0045786 GO:0045839 GO:0045875 GO:0045930 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051098 GO:0051101 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051173 GO:0051276 GO:0051321 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0060249 GO:0060255 GO:0060341 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070034 GO:0071103 GO:0071704 GO:0071840 GO:0071897 GO:0071922 GO:0071923 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0098687 GO:0098847 GO:0106111 GO:0106112 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902969 GO:1903046 GO:1903047 GO:1903827 GO:1903828 GO:1904356 GO:1904358 GO:1905405 GO:1905412 GO:1905634 GO:2000112 GO:2000278 GO:2000573 GO:2001251 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460
Pfam Domains
Protein Families
REPA_OB_2 Rep-A_N Rep_fac-A_C tRNA_anti-codon

Protein Analysis

607

Amino Acids

67.32

Weight (kDa)

5.75

Isoelectric Point (pI)

36.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rep-A_N PF04057 7 - 104 2.3e-19 Replication factor-A protein 1, N-terminal domain
DUF223 PF02721 164 - 267 2.8e-07 Domain of unknown function DUF223
tRNA_anti-codon PF01336 176 - 261 2.6e-10 OB-fold nucleic acid binding domain
REPA_OB_2 PF16900 293 - 390 2.2e-23 Replication protein A OB domain
Rep_fac-A_C PF08646 453 - 503 2.7e-11 Replication factor-A C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 361
Acc65I GGTACC 1 cut(s) 1410
AccB1I GGYRCC 2 cut(s) 1410, 1476
AccI GTMKAC 1 cut(s) 1139
AciI CCGC 1 cut(s) 326
AclWI GGATC 6 cut(s) 60, 70, 73, 91, 1163, 1176
AcoI YGGCCR 3 cut(s) 3, 471, 1051
AcsI RAATTY 3 cut(s) 636, 787, 839
AcuI CTGAAG 5 cut(s) 1203, 1236, 1467, 1512, 1670
AfaI GTAC 5 cut(s) 245, 568, 1292, 1412, 1643
AfiI CCNNNNNNNGG 4 cut(s) 58, 518, 1336, 1337
AjnI CCWGG 3 cut(s) 1053, 1202, 1742
Alw21I GWGCWC 2 cut(s) 1157, 1598
Alw26I GTCTC 4 cut(s) 726, 930, 1110, 1317
AlwI GGATC 6 cut(s) 60, 70, 73, 91, 1163, 1176
AoxI GGCC 7 cut(s) 3, 453, 471, 868, 1051, 1381, 1812
ApaI GGGCCC 1 cut(s) 872
ApeKI GCWGC 4 cut(s) 461, 662, 1664, 1769
ApoI RAATTY 3 cut(s) 636, 787, 839
Asp718I GGTACC 1 cut(s) 1410
AspS9I GGNCC 8 cut(s) 14, 91, 454, 557, 868, 869, 1284, 1382
AsuC2I CCSGG 4 cut(s) 80, 264, 458, 1415
AsuHPI GGTGA 5 cut(s) 370, 418, 1453, 1463, 1556
AvaII GGWCC 4 cut(s) 14, 91, 557, 1284
BaeGI GKGCMC 1 cut(s) 872
BalI TGGCCA 3 cut(s) 5, 473, 1053
BamHI GGATCC 2 cut(s) 65, 1168
BanI GGYRCC 2 cut(s) 1410, 1476
BanII GRGCYC 3 cut(s) 872, 1157, 1262
Bbv12I GWGCWC 2 cut(s) 1157, 1598
BbvI GCAGC 4 cut(s) 448, 649, 1651, 1756
BccI CCATC 9 cut(s) 61, 140, 298, 397, 620, 1270, 1339, 1394, 1448
BceAI ACGGC 1 cut(s) 133
BciT130I CCWGG 3 cut(s) 1055, 1204, 1744
BciVI GTATCC 2 cut(s) 977, 1141
BclI TGATCA 1 cut(s) 1396
BcnI CCSGG 4 cut(s) 80, 264, 458, 1415
BcoDI GTCTC 4 cut(s) 726, 930, 1110, 1317
BfaI CTAG 4 cut(s) 141, 582, 893, 1610
BfmI CTRYAG 2 cut(s) 1086, 1599
BfuAI ACCTGC 1 cut(s) 361
BfuI GTATCC 2 cut(s) 977, 1141
BisI GCNGC 4 cut(s) 462, 663, 1665, 1770
BlsI GCNGC 4 cut(s) 463, 664, 1666, 1771
Bme1390I CCNGG 7 cut(s) 80, 264, 458, 1055, 1204, 1415, 1744
Bme18I GGWCC 4 cut(s) 14, 91, 557, 1284
BmgT120I GGNCC 8 cut(s) 14, 91, 454, 557, 868, 869, 1284, 1382
BmrFI CCNGG 7 cut(s) 80, 264, 458, 1055, 1204, 1415, 1744
BmsI GCATC 3 cut(s) 16, 1247, 1525
Bpu10I CCTNAGC 1 cut(s) 221
BpuEI CTTGAG 2 cut(s) 260, 341
BpuMI CCSGG 4 cut(s) 80, 264, 458, 1415
BsaI GGTCTC 1 cut(s) 726
BsaJI CCNNGG 3 cut(s) 456, 1335, 1743
BsaXI ACNNNNNCTCC 2 cut(s) 357, 387
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 518, 1336, 1337
Bse1I ACTGG 4 cut(s) 69, 1048, 1469, 1546
Bse3DI GCAATG 2 cut(s) 817, 987
BseBI CCWGG 3 cut(s) 1055, 1204, 1744
BseDI CCNNGG 3 cut(s) 456, 1335, 1743
BseGI GGATG 5 cut(s) 490, 805, 904, 1331, 1540
BseLI CCNNNNNNNGG 4 cut(s) 58, 518, 1336, 1337
BseMI GCAATG 2 cut(s) 817, 987
BseMII CTCAG 3 cut(s) 121, 192, 783
BseNI ACTGG 4 cut(s) 69, 1048, 1469, 1546
BseRI GAGGAG 2 cut(s) 306, 1643
BseSI GKGCMC 1 cut(s) 872
BseXI GCAGC 4 cut(s) 448, 649, 1651, 1756
BseYI CCCAGC 1 cut(s) 865
BsgI GTGCAG 1 cut(s) 447
BshFI GGCC 7 cut(s) 5, 455, 473, 870, 1053, 1383, 1814
BshNI GGYRCC 2 cut(s) 1410, 1476
BsiHKAI GWGCWC 2 cut(s) 1157, 1598
BsiSI CCGG 5 cut(s) 59, 80, 264, 458, 1414
BslFI GGGAC 2 cut(s) 570, 836
BslI CCNNNNNNNGG 4 cut(s) 58, 518, 1336, 1337
BsmAI GTCTC 4 cut(s) 726, 930, 1110, 1317
BsmFI GGGAC 2 cut(s) 570, 836
BsmI GAATGC 2 cut(s) 583, 1502
BsnI GGCC 7 cut(s) 5, 455, 473, 870, 1053, 1383, 1814
Bso31I GGTCTC 1 cut(s) 726
Bsp120I GGGCCC 1 cut(s) 868
Bsp1286I GDGCHC 4 cut(s) 872, 1157, 1262, 1598
Bsp143I GATC 9 cut(s) 65, 75, 84, 96, 103, 1033, 1168, 1396, 1622
BspACI CCGC 1 cut(s) 326
BspANI GGCC 7 cut(s) 5, 455, 473, 870, 1053, 1383, 1814
BspCNI CTCAG 3 cut(s) 120, 191, 784
BspMAI CTGCAG 1 cut(s) 1603
BspMI ACCTGC 1 cut(s) 361
BspPI GGATC 6 cut(s) 60, 70, 73, 91, 1163, 1176
BspQI GCTCTTC 1 cut(s) 944
BspT107I GGYRCC 2 cut(s) 1410, 1476
BspTNI GGTCTC 1 cut(s) 726
BsrDI GCAATG 2 cut(s) 817, 987
BsrI ACTGG 4 cut(s) 69, 1048, 1469, 1546
BssECI CCNNGG 3 cut(s) 456, 1335, 1743
BssMI GATC 9 cut(s) 65, 75, 84, 96, 103, 1033, 1168, 1396, 1622
BssT1I CCWWGG 1 cut(s) 1335
Bst2UI CCWGG 3 cut(s) 1055, 1204, 1744
Bst4CI ACNGT 3 cut(s) 125, 250, 1144
Bst6I CTCTTC 3 cut(s) 944, 1718, 1788
BstAPI GCANNNNNTGC 1 cut(s) 1428
BstC8I GCNNGC 3 cut(s) 269, 732, 1420
BstDEI CTNAG 5 cut(s) 107, 178, 221, 792, 1505
BstENI CCTNNNNNAGG 1 cut(s) 516
BstF5I GGATG 5 cut(s) 490, 805, 904, 1331, 1540
BstKTI GATC 9 cut(s) 68, 78, 87, 99, 106, 1036, 1171, 1399, 1625
BstMAI GTCTC 4 cut(s) 726, 930, 1110, 1317
BstMBI GATC 9 cut(s) 65, 75, 84, 96, 103, 1033, 1168, 1396, 1622
BstMWI GCNNNNNNNGC 4 cut(s) 461, 470, 1428, 1535
BstNI CCWGG 3 cut(s) 1055, 1204, 1744
BstSCI CCNGG 7 cut(s) 78, 262, 456, 1053, 1202, 1413, 1742
BstSFI CTRYAG 2 cut(s) 1086, 1599
BstSLI GKGCMC 1 cut(s) 872
BstV1I GCAGC 4 cut(s) 448, 649, 1651, 1756
BstX2I RGATCY 3 cut(s) 65, 96, 1168
BstYI RGATCY 3 cut(s) 65, 96, 1168
BsuI GTATCC 2 cut(s) 977, 1141
BsuRI GGCC 7 cut(s) 5, 455, 473, 870, 1053, 1383, 1814
BtgZI GCGATG 1 cut(s) 39
BtsCI GGATG 5 cut(s) 490, 805, 904, 1331, 1540
BtsIMutI CAGTG 3 cut(s) 246, 1369, 1699
BveI ACCTGC 1 cut(s) 361
Cac8I GCNNGC 3 cut(s) 269, 732, 1420
Cfr13I GGNCC 8 cut(s) 14, 91, 454, 557, 868, 869, 1284, 1382
CseI GACGC 1 cut(s) 46
Csp6I GTAC 5 cut(s) 244, 567, 1291, 1411, 1642
CspCI CAANNNNNGTGG 2 cut(s) 1146, 1181
CviAII CATG 6 cut(s) 434, 475, 562, 875, 1281, 1288
CviQI GTAC 5 cut(s) 244, 567, 1291, 1411, 1642
DdeI CTNAG 5 cut(s) 107, 178, 221, 792, 1505
DpnI GATC 9 cut(s) 67, 77, 86, 98, 105, 1035, 1170, 1398, 1624
DpnII GATC 9 cut(s) 65, 75, 84, 96, 103, 1033, 1168, 1396, 1622
DraI TTTAAA 1 cut(s) 780
EaeI YGGCCR 3 cut(s) 3, 471, 1051
Eam1104I CTCTTC 3 cut(s) 944, 1718, 1788
EarI CTCTTC 3 cut(s) 944, 1718, 1788
EciI GGCGGA 1 cut(s) 341
Ecl136II GAGCTC 1 cut(s) 1155
Eco130I CCWWGG 1 cut(s) 1335
Eco147I AGGCCT 1 cut(s) 1814
Eco24I GRGCYC 3 cut(s) 872, 1157, 1262
Eco31I GGTCTC 1 cut(s) 726
Eco32I GATATC 1 cut(s) 1800
Eco47I GGWCC 4 cut(s) 14, 91, 557, 1284
Eco53kI GAGCTC 1 cut(s) 1155
Eco57I CTGAAG 5 cut(s) 1203, 1236, 1467, 1512, 1670
EcoICRI GAGCTC 1 cut(s) 1155
EcoNI CCTNNNNNAGG 1 cut(s) 516
EcoO109I RGGNCCY 3 cut(s) 557, 869, 1382
EcoRI GAATTC 1 cut(s) 787
EcoRII CCWGG 3 cut(s) 1053, 1202, 1742
EcoRV GATATC 1 cut(s) 1800
EcoT14I CCWWGG 1 cut(s) 1335
EcoT22I ATGCAT 1 cut(s) 435
EcoT38I GRGCYC 3 cut(s) 872, 1157, 1262
ErhI CCWWGG 1 cut(s) 1335
FaeI CATG 6 cut(s) 437, 478, 565, 878, 1284, 1291
FalI AAGNNNNNCTT 2 cut(s) 1539, 1571
FaqI GGGAC 2 cut(s) 570, 836
FatI CATG 6 cut(s) 433, 474, 561, 874, 1280, 1287
FbaI TGATCA 1 cut(s) 1396
FblI GTMKAC 1 cut(s) 1139
Fnu4HI GCNGC 4 cut(s) 462, 663, 1665, 1770
FokI GGATG 5 cut(s) 477, 812, 911, 1318, 1547
FriOI GRGCYC 3 cut(s) 872, 1157, 1262
Fsp4HI GCNGC 4 cut(s) 462, 663, 1665, 1770
FspBI CTAG 4 cut(s) 141, 582, 893, 1610
GluI GCNGC 4 cut(s) 462, 663, 1665, 1770
GsaI CCCAGC 1 cut(s) 869
HaeIII GGCC 7 cut(s) 5, 455, 473, 870, 1053, 1383, 1814
HapII CCGG 5 cut(s) 59, 80, 264, 458, 1414
HgaI GACGC 1 cut(s) 46
Hin1II CATG 6 cut(s) 437, 478, 565, 878, 1284, 1291
HincII GTYRAC 3 cut(s) 199, 615, 880
HindII GTYRAC 3 cut(s) 199, 615, 880
HindIII AAGCTT 3 cut(s) 8, 819, 1371
HinfI GANTC 8 cut(s) 169, 200, 508, 998, 1211, 1302, 1402, 1775
HpaI GTTAAC 2 cut(s) 615, 880
HpaII CCGG 5 cut(s) 59, 80, 264, 458, 1414
HphI GGTGA 5 cut(s) 370, 418, 1453, 1463, 1556
Hpy166II GTNNAC 7 cut(s) 135, 199, 246, 615, 703, 880, 1140
Hpy188III TCNNGA 5 cut(s) 94, 239, 320, 830, 1172
Hpy8I GTNNAC 7 cut(s) 135, 199, 246, 615, 703, 880, 1140
Hpy99I CGWCG 1 cut(s) 40
HpyAV CCTTC 7 cut(s) 477, 691, 939, 1211, 1442, 1466, 1804
HpyCH4III ACNGT 3 cut(s) 125, 250, 1144
HpyCH4IV ACGT 1 cut(s) 112
HpyF10VI GCNNNNNNNGC 4 cut(s) 461, 470, 1428, 1535
HpyF3I CTNAG 5 cut(s) 107, 178, 221, 792, 1505
HpySE526I ACGT 1 cut(s) 112
Hsp92II CATG 6 cut(s) 437, 478, 565, 878, 1284, 1291
KflI GGGWCCC 1 cut(s) 557
KpnI GGTACC 1 cut(s) 1414
Ksp22I TGATCA 1 cut(s) 1396
KspAI GTTAAC 2 cut(s) 615, 880
Kzo9I GATC 9 cut(s) 65, 75, 84, 96, 103, 1033, 1168, 1396, 1622
LguI GCTCTTC 1 cut(s) 944
LmnI GCTCC 2 cut(s) 1277, 1759
Lsp1109I GCAGC 4 cut(s) 448, 649, 1651, 1756
LweI GCATC 3 cut(s) 16, 1247, 1525
MaeI CTAG 4 cut(s) 141, 582, 893, 1610
MaeII ACGT 1 cut(s) 112
MaeIII GTNAC 8 cut(s) 113, 406, 544, 913, 977, 1441, 1460, 1735
MalI GATC 9 cut(s) 67, 77, 86, 98, 105, 1035, 1170, 1398, 1624
MboI GATC 9 cut(s) 65, 75, 84, 96, 103, 1033, 1168, 1396, 1622
MboII GAAGA 9 cut(s) 163, 635, 827, 961, 1505, 1594, 1735, 1805, 1816
MfeI CAATTG 2 cut(s) 523, 855
MflI RGATCY 3 cut(s) 65, 96, 1168
MhlI GDGCHC 4 cut(s) 872, 1157, 1262, 1598
MlsI TGGCCA 3 cut(s) 5, 473, 1053
MluCI AATT 9 cut(s) 523, 636, 689, 787, 839, 855, 1058, 1485, 1616
MluNI TGGCCA 3 cut(s) 5, 473, 1053
MlyI GAGTC 3 cut(s) 194, 1007, 1396
MmeI TCCRAC 1 cut(s) 1093
Mox20I TGGCCA 3 cut(s) 5, 473, 1053
Mph1103I ATGCAT 1 cut(s) 435
MscI TGGCCA 3 cut(s) 5, 473, 1053
MseI TTAA 7 cut(s) 252, 614, 755, 779, 879, 1368, 1819
Msp20I TGGCCA 3 cut(s) 5, 473, 1053
MspA1I CMGCKG 1 cut(s) 1648
MspI CCGG 5 cut(s) 59, 80, 264, 458, 1414
MspR9I CCNGG 7 cut(s) 80, 264, 458, 1055, 1204, 1415, 1744
MunI CAATTG 2 cut(s) 523, 855
Mva1269I GAATGC 2 cut(s) 583, 1502
MvaI CCWGG 3 cut(s) 1055, 1204, 1744
MwoI GCNNNNNNNGC 4 cut(s) 461, 470, 1428, 1535
NciI CCSGG 4 cut(s) 80, 264, 458, 1415
NdeII GATC 9 cut(s) 65, 75, 84, 96, 103, 1033, 1168, 1396, 1622
NlaIII CATG 6 cut(s) 437, 478, 565, 878, 1284, 1291
NmuCI GTSAC 3 cut(s) 406, 977, 1441
NsiI ATGCAT 1 cut(s) 435
PceI AGGCCT 1 cut(s) 1814
PciSI GCTCTTC 1 cut(s) 944
PcsI WCGNNNNNNNCGW 1 cut(s) 44
PctI GAATGC 2 cut(s) 583, 1502
PfeI GAWTC 5 cut(s) 169, 508, 1211, 1302, 1775
PflFI GACNNNGTC 1 cut(s) 1070
PfoI TCCNGGA 1 cut(s) 78
PkrI GCNGC 4 cut(s) 463, 664, 1666, 1771
PleI GAGTC 3 cut(s) 194, 1006, 1396
PpsI GAGTC 3 cut(s) 194, 1006, 1396
PpuMI RGGWCCY 1 cut(s) 557
Psp124BI GAGCTC 1 cut(s) 1157
Psp5II RGGWCCY 1 cut(s) 557
Psp6I CCWGG 3 cut(s) 1053, 1202, 1742
PspFI CCCAGC 1 cut(s) 865
PspGI CCWGG 3 cut(s) 1053, 1202, 1742
PspOMI GGGCCC 1 cut(s) 868
PspPI GGNCC 8 cut(s) 14, 91, 454, 557, 868, 869, 1284, 1382
PspPPI RGGWCCY 1 cut(s) 557
PstI CTGCAG 1 cut(s) 1603
PsuI RGATCY 3 cut(s) 65, 96, 1168
PsyI GACNNNGTC 1 cut(s) 1070
PvuII CAGCTG 1 cut(s) 1648
RsaI GTAC 5 cut(s) 245, 568, 1292, 1412, 1643
RsaNI GTAC 5 cut(s) 244, 567, 1291, 1411, 1642
SacI GAGCTC 1 cut(s) 1157
SapI GCTCTTC 1 cut(s) 944
SaqAI TTAA 7 cut(s) 252, 614, 755, 779, 879, 1368, 1819
SatI GCNGC 4 cut(s) 462, 663, 1665, 1770
Sau3AI GATC 9 cut(s) 65, 75, 84, 96, 103, 1033, 1168, 1396, 1622
Sau96I GGNCC 8 cut(s) 14, 91, 454, 557, 868, 869, 1284, 1382
SchI GAGTC 3 cut(s) 194, 1007, 1396
ScrFI CCNGG 7 cut(s) 80, 264, 458, 1055, 1204, 1415, 1744
SduI GDGCHC 4 cut(s) 872, 1157, 1262, 1598
SfaNI GCATC 3 cut(s) 16, 1247, 1525
SfcI CTRYAG 2 cut(s) 1086, 1599
SinI GGWCC 4 cut(s) 14, 91, 557, 1284
SmlI CTYRAG 2 cut(s) 239, 320
SmoI CTYRAG 2 cut(s) 239, 320
Sse9I AATT 9 cut(s) 523, 636, 689, 787, 839, 855, 1058, 1485, 1616
SseBI AGGCCT 1 cut(s) 1814
SsiI CCGC 1 cut(s) 326
SspMI CTAG 4 cut(s) 141, 582, 893, 1610
SstI GAGCTC 1 cut(s) 1157
StuI AGGCCT 1 cut(s) 1814
StyD4I CCNGG 7 cut(s) 78, 262, 456, 1053, 1202, 1413, 1742
StyI CCWWGG 1 cut(s) 1335
TaaI ACNGT 3 cut(s) 125, 250, 1144
TaiI ACGT 1 cut(s) 115
TaqI TCGA 4 cut(s) 35, 102, 1001, 1802
TasI AATT 9 cut(s) 523, 636, 689, 787, 839, 855, 1058, 1485, 1616
TatI WGTACW 2 cut(s) 243, 1290
TfiI GAWTC 5 cut(s) 169, 508, 1211, 1302, 1775
Tru1I TTAA 7 cut(s) 252, 614, 755, 779, 879, 1368, 1819
Tru9I TTAA 7 cut(s) 252, 614, 755, 779, 879, 1368, 1819
TscAI CASTG 3 cut(s) 253, 1369, 1699
TseFI GTSAC 3 cut(s) 406, 977, 1441
TseI GCWGC 4 cut(s) 461, 662, 1664, 1769
Tsp45I GTSAC 3 cut(s) 406, 977, 1441
TspDTI ATGAA 9 cut(s) 170, 479, 636, 672, 783, 816, 828, 1587, 1722
TspGWI ACGGA 2 cut(s) 78, 1093
TspRI CASTG 3 cut(s) 253, 1369, 1699
Tth111I GACNNNGTC 1 cut(s) 1070
VpaK11BI GGWCC 4 cut(s) 14, 91, 557, 1284
XagI CCTNNNNNAGG 1 cut(s) 516
XapI RAATTY 3 cut(s) 636, 787, 839
XcmI CCANNNNNNNNNTGG 2 cut(s) 400, 1786
XmiI GTMKAC 1 cut(s) 1139
XspI CTAG 4 cut(s) 141, 582, 893, 1610
Zsp2I ATGCAT 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.