Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000111.1

Orthogroup ID

OG0009976

Physical Location & Seq

Genomic Coordinates Forward (+)

49304 .. 52446

Gene Structure 3143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000111.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1827 bp

atggcgaagcttggaccaaccccagatgcgatttcgaccctcttggccaacccatcgccgaaagagtccagcccgatcccggagatcgtcgtccaggtcgtcgacctcaatcttaagggcatcaaccgttatatgtttactgctagtgatggaaagatgaggctaaagacgatgttgagcacagaattgagtcctgatgttatttctgggaaaattcagaacctgggcctcattcgacttcttgattacactgtcaatgacattccaaacaagcccgaaaaatatatgattgtaataaactgtgagatggtttcacctgcgcttgagatggagattaaaagcgaggtcagtaaagatgaggtgaaaggagaacaggttgggattattttgaagcccaagcaagagatggtgactaaatcagctgctcaaattatgcatgagcagaatgcaaatatggccccggctgcacgaatggccatgaccagaagggttcatcctattgtttccttgaatccttatcaaggcaattggaccataaaggttcgtgttacaaacaagggaaccatgcgtacttactcgaatgctagaggtcaaggctgtgtcttcaatgtggagttaacagatgaagacggaactgaaattcgagctacaatgtttaatgaagctgcaaagaagttctatgaaaagtttcaactagggaaggtctattatgtttcaaagggagctctaaaggttgctaacaagaagtttagcacagtacaaaatgattatgaaatgaccttaaatgagaattctgaggtggatgaagtcagcaatgaagaagcttttgttcctgaaacaaaatttgattttatcccaattgatatgttgggtccccatgttaacagcaaggtgcttgtggatgttattggagttgttacaaatgtgtctcctacaatgagcatcagaagaaagagcaacaatgagaatatcccaaagcgtgacattaccattgctgatgagtcgaaaaaagtggttgtggtttctttatggaatgatcttgcaactggtgttggccaggaattgctggacattgctgatcaatctcctgtagttgctatcaaatcccttaaagttggagactatcaaggtgtatccttgtctacgttgtccaggagctcaatatttgtaaatccagatttacctgaagcaaagaggttgaaatcctggtatgattctgaaggtaaagaggtttcaatggcatctgttggctctggtatgagcccatcagccaatagtggagcatggtccatgtactctgatagaatctccctgtcttatttgaaagataacccgtccttgggtgaggacaagcctgtgtttttcagtgttaaagcttatataagctccatcaagcctgatcagactctctggtaccgggcttgcaaaatgtgcaacaaaaaggtgactgaaagtctggatggtggtttctggtgtgacgggtgccagaaaaatgccgaagaatgcagtttaaggtatatattagttgcaagagctatggatgcaactagtgaagtatatctttctgtgtttaataatgaagcagagaggattattgggtgctctgcagatgagctggacaaactgagatcagaggagcacaatctgtatgaggtgaagttgaaacaagctacttgggttcctcatcttttcagggtcagtgtttctcagaatgagtacaataacgagaagaggcaaaggataactgccagggcagctgctccacttgattttgctgctgaatcaaaatttttgctagaagagatatcaaagatgaaagcttcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000278 GO:0000723 GO:0000724 GO:0000725 GO:0000781 GO:0000784 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005662 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006278 GO:0006279 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007004 GO:0007049 GO:0007063 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010224 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010638 GO:0010639 GO:0010833 GO:0010948 GO:0016043 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022402 GO:0022414 GO:0030894 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032392 GO:0032508 GO:0032879 GO:0032880 GO:0032991 GO:0032993 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035861 GO:0042162 GO:0042592 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044786 GO:0045786 GO:0045839 GO:0045875 GO:0045930 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051098 GO:0051101 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051173 GO:0051276 GO:0051321 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0060249 GO:0060255 GO:0060341 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070034 GO:0071103 GO:0071704 GO:0071840 GO:0071897 GO:0071922 GO:0071923 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0098687 GO:0098847 GO:0106111 GO:0106112 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902969 GO:1903046 GO:1903047 GO:1903827 GO:1903828 GO:1904356 GO:1904358 GO:1905405 GO:1905412 GO:1905634 GO:2000112 GO:2000278 GO:2000573 GO:2001251 GO:2001252

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

REPA_OB_2 Rep-A_N Rep_fac-A_C tRNA_anti-codon

Protein Analysis

608

Amino Acids

67.75

Weight (kDa)

6.15

Isoelectric Point (pI)

38.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08020 AT5G61000
fragaria_vesca	FvH4_5g13771 FvH4_5g13771 FvH4_5g13771 FvH4_5g13771
malus_domestica	MD06G1225500.v1.1 MD14G1212400.v1.1
prunus_persica	Prupe.5G205700_v2.0.a1
pyrus_communis	pycom06g18000
rosa_chinensis	RchiOBHm_Chr7g0183161
rosa_laevigata	RLG00000005071
rosa_multiflora	Rmu_sc0038240.1_g000001 Rmu_ssc0000111.1_g000015
rosa_roxburghii	Rroxscaffold_3G00270700
rosa_rugosa	Rorug06G0454500
rosa_samantha	Rh7AG056800 Rh7BG056500 Rh7CG057500 Rh7DG056400
rosa_wichuraiana	Rw7G004630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	325
Acc36I	ACCTGC	1 cut(s)	325
Acc65I	GGTACC	1 cut(s)	1413
AccB1I	GGYRCC	2 cut(s)	1413, 1482
AccI	GTMKAC	2 cut(s)	102, 1142
AclWI	GGATC	1 cut(s)	70
AcoI	YGGCCR	3 cut(s)	45, 474, 1054
AcsI	RAATTY	5 cut(s)	213, 639, 790, 842, 1787
AcuI	CTGAAG	2 cut(s)	1206, 1239
AfaI	GTAC	5 cut(s)	571, 759, 1295, 1415, 1718
AfiI	CCNNNNNNNGG	4 cut(s)	79, 521, 1339, 1340
AflII	CTTAAG	1 cut(s)	113
AgsI	TTSAA	9 cut(s)	391, 511, 607, 692, 717, 1201, 1236, 1324, 1663
AhdI	GACNNNNNGTC	1 cut(s)	1452
AhlI	ACTAGT	1 cut(s)	1547
AjnI	CCWGG	6 cut(s)	93, 222, 1056, 1151, 1205, 1748
Alw21I	GWGCWC	5 cut(s)	182, 727, 1160, 1604, 1641
Alw26I	GTCTC	2 cut(s)	933, 1113
AlwI	GGATC	1 cut(s)	70
AlwNI	CAGNNNCTG	1 cut(s)	223
AoxI	GGCC	5 cut(s)	45, 226, 456, 474, 1054
ApeKI	GCWGC	6 cut(s)	422, 464, 665, 1754, 1757, 1775
ApoI	RAATTY	5 cut(s)	213, 639, 790, 842, 1787
Asp700I	GAANNNNTTC	1 cut(s)	687
Asp718I	GGTACC	1 cut(s)	1413
AspLEI	GCGC	1 cut(s)	322
AspS9I	GGNCC	6 cut(s)	14, 226, 457, 531, 872, 1287
AsuC2I	CCSGG	3 cut(s)	80, 461, 1418
AsuHPI	GGTGA	6 cut(s)	306, 373, 421, 1355, 1456, 1666
AvaII	GGWCC	4 cut(s)	14, 531, 872, 1287
BalI	TGGCCA	3 cut(s)	47, 476, 1056
BanI	GGYRCC	2 cut(s)	1413, 1482
BanII	GRGCYC	3 cut(s)	727, 1160, 1265
BbsI	GAAGAC	2 cut(s)	595, 633
Bbv12I	GWGCWC	5 cut(s)	182, 727, 1160, 1604, 1641
BbvI	GCAGC	6 cut(s)	409, 451, 652, 1744, 1762, 1766
BccI	CCATC	8 cut(s)	61, 143, 301, 322, 400, 1273, 1397, 1454
BciT130I	CCWGG	6 cut(s)	95, 224, 1058, 1153, 1207, 1750
BciVI	GTATCC	1 cut(s)	1144
BclI	TGATCA	2 cut(s)	1078, 1399
BcnI	CCSGG	3 cut(s)	80, 461, 1418
BcoDI	GTCTC	2 cut(s)	933, 1113
BcuI	ACTAGT	1 cut(s)	1547
BfaI	CTAG	5 cut(s)	144, 585, 695, 1548, 1796
BfmI	CTRYAG	2 cut(s)	1089, 1605
BfrI	CTTAAG	1 cut(s)	113
BfuAI	ACCTGC	1 cut(s)	325
BfuI	GTATCC	1 cut(s)	1144
BisI	GCNGC	6 cut(s)	423, 465, 666, 1755, 1758, 1776
BlsI	GCNGC	6 cut(s)	424, 466, 667, 1756, 1759, 1777
Bme1390I	CCNGG	9 cut(s)	80, 95, 224, 461, 1058, 1153, 1207, 1418, 1750
Bme18I	GGWCC	4 cut(s)	14, 531, 872, 1287
BmeRI	GACNNNNNGTC	1 cut(s)	1452
BmgT120I	GGNCC	6 cut(s)	14, 226, 457, 531, 872, 1287
BmiI	GGNNCC	7 cut(s)	459, 562, 873, 874, 1415, 1484, 1680
BmrFI	CCNGG	9 cut(s)	80, 95, 224, 461, 1058, 1153, 1207, 1418, 1750
BmsI	GCATC	5 cut(s)	16, 129, 951, 1250, 1531
BpiI	GAAGAC	2 cut(s)	595, 633
BpuEI	CTTGAG	1 cut(s)	344
BpuMI	CCSGG	3 cut(s)	80, 461, 1418
BsaJI	CCNNGG	4 cut(s)	223, 459, 1338, 1749
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bsc4I	CCNNNNNNNGG	4 cut(s)	79, 521, 1339, 1340
Bse1I	ACTGG	1 cut(s)	1051
Bse3DI	GCAATG	3 cut(s)	820, 990, 1071
BseBI	CCWGG	6 cut(s)	95, 224, 1058, 1153, 1207, 1750
BseDI	CCNNGG	4 cut(s)	223, 459, 1338, 1749
BseGI	GGATG	5 cut(s)	493, 808, 907, 1465, 1546
BseLI	CCNNNNNNNGG	4 cut(s)	79, 521, 1339, 1340
BseMI	GCAATG	3 cut(s)	820, 990, 1071
BseMII	CTCAG	3 cut(s)	786, 1616, 1721
BseNI	ACTGG	1 cut(s)	1051
BseRI	GAGGAG	1 cut(s)	1649
BseXI	GCAGC	6 cut(s)	409, 451, 652, 1744, 1762, 1766
BsgI	GTGCAG	1 cut(s)	450
BshFI	GGCC	5 cut(s)	47, 228, 458, 476, 1056
BshNI	GGYRCC	2 cut(s)	1413, 1482
BsiHKAI	GWGCWC	5 cut(s)	182, 727, 1160, 1604, 1641
BsiSI	CCGG	3 cut(s)	80, 461, 1417
BslFI	GGGAC	1 cut(s)	858
BslI	CCNNNNNNNGG	4 cut(s)	79, 521, 1339, 1340
BsmAI	GTCTC	2 cut(s)	933, 1113
BsmFI	GGGAC	1 cut(s)	858
BsmI	GAATGC	3 cut(s)	451, 586, 1508
BsnI	GGCC	5 cut(s)	47, 228, 458, 476, 1056
Bsp1286I	GDGCHC	6 cut(s)	182, 727, 1160, 1265, 1604, 1641
Bsp143I	GATC	6 cut(s)	75, 84, 1036, 1078, 1399, 1628
BspANI	GGCC	5 cut(s)	47, 228, 458, 476, 1056
BspCNI	CTCAG	3 cut(s)	787, 1617, 1720
BspLI	GGNNCC	7 cut(s)	459, 562, 873, 874, 1415, 1484, 1680
BspMAI	CTGCAG	1 cut(s)	1609
BspMI	ACCTGC	1 cut(s)	325
BspPI	GGATC	1 cut(s)	70
BspT107I	GGYRCC	2 cut(s)	1413, 1482
BspTI	CTTAAG	1 cut(s)	113
BsrDI	GCAATG	3 cut(s)	820, 990, 1071
BsrI	ACTGG	1 cut(s)	1051
BssECI	CCNNGG	4 cut(s)	223, 459, 1338, 1749
BssMI	GATC	6 cut(s)	75, 84, 1036, 1078, 1399, 1628
BssT1I	CCWWGG	1 cut(s)	1338
Bst2UI	CCWGG	6 cut(s)	95, 224, 1058, 1153, 1207, 1750
Bst4CI	ACNGT	4 cut(s)	128, 253, 302, 757
Bst6I	CTCTTC	2 cut(s)	1724, 1794
BstAFI	CTTAAG	1 cut(s)	113
BstAPI	GCANNNNNTGC	1 cut(s)	1431
BstC8I	GCNNGC	1 cut(s)	1423
BstDEI	CTNAG	3 cut(s)	795, 1625, 1707
BstENI	CCTNNNNNAGG	1 cut(s)	519
BstF5I	GGATG	5 cut(s)	493, 808, 907, 1465, 1546
BstHHI	GCGC	1 cut(s)	322
BstKTI	GATC	6 cut(s)	78, 87, 1039, 1081, 1402, 1631
BstMAI	GTCTC	2 cut(s)	933, 1113
BstMBI	GATC	6 cut(s)	75, 84, 1036, 1078, 1399, 1628
BstMWI	GCNNNNNNNGC	6 cut(s)	455, 464, 473, 1431, 1541, 1754
BstNI	CCWGG	6 cut(s)	95, 224, 1058, 1153, 1207, 1750
BstSCI	CCNGG	9 cut(s)	78, 93, 222, 459, 1056, 1151, 1205, 1416, 1748
BstSFI	CTRYAG	2 cut(s)	1089, 1605
BstV1I	GCAGC	6 cut(s)	409, 451, 652, 1744, 1762, 1766
BstV2I	GAAGAC	2 cut(s)	595, 633
BsuI	GTATCC	1 cut(s)	1144
BsuRI	GGCC	5 cut(s)	47, 228, 458, 476, 1056
BtgZI	GCGATG	1 cut(s)	39
BtsCI	GGATG	5 cut(s)	493, 808, 907, 1465, 1546
BtsIMutI	CAGTG	3 cut(s)	249, 1372, 1705
BveI	ACCTGC	1 cut(s)	325
Cac8I	GCNNGC	1 cut(s)	1423
CaiI	CAGNNNCTG	1 cut(s)	223
CfoI	GCGC	1 cut(s)	322
Cfr13I	GGNCC	6 cut(s)	14, 226, 457, 531, 872, 1287
Csp6I	GTAC	5 cut(s)	570, 758, 1294, 1414, 1717
CviAII	CATG	6 cut(s)	437, 478, 565, 878, 1284, 1291
CviQI	GTAC	5 cut(s)	570, 758, 1294, 1414, 1717
DdeI	CTNAG	3 cut(s)	795, 1625, 1707
DpnI	GATC	6 cut(s)	77, 86, 1038, 1080, 1401, 1630
DpnII	GATC	6 cut(s)	75, 84, 1036, 1078, 1399, 1628
DriI	GACNNNNNGTC	1 cut(s)	1452
EaeI	YGGCCR	3 cut(s)	45, 474, 1054
Eam1104I	CTCTTC	2 cut(s)	1724, 1794
Eam1105I	GACNNNNNGTC	1 cut(s)	1452
EarI	CTCTTC	2 cut(s)	1724, 1794
Ecl136II	GAGCTC	2 cut(s)	725, 1158
Eco130I	CCWWGG	1 cut(s)	1338
Eco24I	GRGCYC	3 cut(s)	727, 1160, 1265
Eco32I	GATATC	1 cut(s)	1806
Eco47I	GGWCC	4 cut(s)	14, 531, 872, 1287
Eco53kI	GAGCTC	2 cut(s)	725, 1158
Eco57I	CTGAAG	2 cut(s)	1206, 1239
EcoICRI	GAGCTC	2 cut(s)	725, 1158
EcoNI	CCTNNNNNAGG	1 cut(s)	519
EcoO109I	RGGNCCY	1 cut(s)	872
EcoRI	GAATTC	1 cut(s)	790
EcoRII	CCWGG	6 cut(s)	93, 222, 1056, 1151, 1205, 1748
EcoRV	GATATC	1 cut(s)	1806
EcoT14I	CCWWGG	1 cut(s)	1338
EcoT22I	ATGCAT	1 cut(s)	438
EcoT38I	GRGCYC	3 cut(s)	727, 1160, 1265
ErhI	CCWWGG	1 cut(s)	1338
FaeI	CATG	6 cut(s)	440, 481, 568, 881, 1287, 1294
FalI	AAGNNNNNCTT	2 cut(s)	1545, 1577
FaqI	GGGAC	1 cut(s)	858
FatI	CATG	6 cut(s)	436, 477, 564, 877, 1283, 1290
FbaI	TGATCA	2 cut(s)	1078, 1399
FblI	GTMKAC	2 cut(s)	102, 1142
Fnu4HI	GCNGC	6 cut(s)	423, 465, 666, 1755, 1758, 1776
FokI	GGATG	5 cut(s)	480, 815, 914, 1472, 1553
FriOI	GRGCYC	3 cut(s)	727, 1160, 1265
Fsp4HI	GCNGC	6 cut(s)	423, 465, 666, 1755, 1758, 1776
FspBI	CTAG	5 cut(s)	144, 585, 695, 1548, 1796
GlaI	GCGC	1 cut(s)	321
GluI	GCNGC	6 cut(s)	423, 465, 666, 1755, 1758, 1776
HaeIII	GGCC	5 cut(s)	47, 228, 458, 476, 1056
HapII	CCGG	3 cut(s)	80, 461, 1417
HhaI	GCGC	1 cut(s)	322
Hin1II	CATG	6 cut(s)	440, 481, 568, 881, 1287, 1294
Hin6I	GCGC	1 cut(s)	320
HinP1I	GCGC	1 cut(s)	320
HincII	GTYRAC	3 cut(s)	103, 618, 883
HindII	GTYRAC	3 cut(s)	103, 618, 883
HindIII	AAGCTT	4 cut(s)	8, 822, 1374, 1818
HinfI	GANTC	8 cut(s)	65, 190, 511, 1001, 1214, 1305, 1405, 1781
HpaI	GTTAAC	2 cut(s)	618, 883
HpaII	CCGG	3 cut(s)	80, 461, 1417
HphI	GGTGA	6 cut(s)	306, 373, 421, 1355, 1456, 1666
Hpy166II	GTNNAC	5 cut(s)	103, 138, 618, 883, 1143
Hpy188I	TCNGA	8 cut(s)	219, 796, 947, 1219, 1300, 1404, 1633, 1710
Hpy188III	TCNNGA	5 cut(s)	194, 242, 833, 1175, 1457
Hpy8I	GTNNAC	5 cut(s)	103, 138, 618, 883, 1143
Hpy99I	CGWCG	2 cut(s)	92, 104
HpyAV	CCTTC	3 cut(s)	480, 694, 1214
HpyCH4III	ACNGT	4 cut(s)	128, 253, 302, 757
HpyCH4IV	ACGT	1 cut(s)	1145
HpyF10VI	GCNNNNNNNGC	6 cut(s)	455, 464, 473, 1431, 1541, 1754
HpyF3I	CTNAG	3 cut(s)	795, 1625, 1707
HpySE526I	ACGT	1 cut(s)	1145
Hsp92II	CATG	6 cut(s)	440, 481, 568, 881, 1287, 1294
HspAI	GCGC	1 cut(s)	320
KflI	GGGWCCC	1 cut(s)	872
KpnI	GGTACC	1 cut(s)	1417
Ksp22I	TGATCA	2 cut(s)	1078, 1399
KspAI	GTTAAC	2 cut(s)	618, 883
Kzo9I	GATC	6 cut(s)	75, 84, 1036, 1078, 1399, 1628
LmnI	GCTCC	6 cut(s)	722, 1155, 1280, 1391, 1636, 1765
Lsp1109I	GCAGC	6 cut(s)	409, 451, 652, 1744, 1762, 1766
LweI	GCATC	5 cut(s)	16, 129, 951, 1250, 1531
MaeI	CTAG	5 cut(s)	144, 585, 695, 1548, 1796
MaeII	ACGT	1 cut(s)	1145
MaeIII	GTNAC	6 cut(s)	409, 547, 916, 980, 1444, 1475
MalI	GATC	6 cut(s)	77, 86, 1038, 1080, 1401, 1630
MboI	GATC	6 cut(s)	75, 84, 1036, 1078, 1399, 1628
MboII	GAAGA	7 cut(s)	595, 638, 830, 960, 1511, 1741, 1811
MfeI	CAATTG	2 cut(s)	526, 858
MhlI	GDGCHC	6 cut(s)	182, 727, 1160, 1265, 1604, 1641
MlsI	TGGCCA	3 cut(s)	47, 476, 1056
MluNI	TGGCCA	3 cut(s)	47, 476, 1056
MlyI	GAGTC	4 cut(s)	74, 199, 1010, 1399
MmeI	TCCRAC	1 cut(s)	1096
Mox20I	TGGCCA	3 cut(s)	47, 476, 1056
Mph1103I	ATGCAT	1 cut(s)	438
MroXI	GAANNNNTTC	1 cut(s)	687
MscI	TGGCCA	3 cut(s)	47, 476, 1056
Msp20I	TGGCCA	3 cut(s)	47, 476, 1056
MspA1I	CMGCKG	2 cut(s)	422, 1757
MspCI	CTTAAG	1 cut(s)	113
MspI	CCGG	3 cut(s)	80, 461, 1417
MspR9I	CCNGG	9 cut(s)	80, 95, 224, 461, 1058, 1153, 1207, 1418, 1750
MunI	CAATTG	2 cut(s)	526, 858
Mva1269I	GAATGC	3 cut(s)	451, 586, 1508
MvaI	CCWGG	6 cut(s)	95, 224, 1058, 1153, 1207, 1750
MwoI	GCNNNNNNNGC	6 cut(s)	455, 464, 473, 1431, 1541, 1754
NciI	CCSGG	3 cut(s)	80, 461, 1418
NdeII	GATC	6 cut(s)	75, 84, 1036, 1078, 1399, 1628
NlaIII	CATG	6 cut(s)	440, 481, 568, 881, 1287, 1294
NlaIV	GGNNCC	7 cut(s)	459, 562, 873, 874, 1415, 1484, 1680
NmuCI	GTSAC	4 cut(s)	409, 980, 1444, 1475
NsiI	ATGCAT	1 cut(s)	438
PaqCI	CACCTGC	1 cut(s)	325
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PctI	GAATGC	3 cut(s)	451, 586, 1508
PdmI	GAANNNNTTC	1 cut(s)	687
PfeI	GAWTC	4 cut(s)	511, 1214, 1305, 1781
PfoI	TCCNGGA	2 cut(s)	78, 1151
PkrI	GCNGC	6 cut(s)	424, 466, 667, 1756, 1759, 1777
PleI	GAGTC	4 cut(s)	73, 198, 1009, 1399
PpsI	GAGTC	4 cut(s)	73, 198, 1009, 1399
PpuMI	RGGWCCY	1 cut(s)	872
Psp124BI	GAGCTC	2 cut(s)	727, 1160
Psp5II	RGGWCCY	1 cut(s)	872
Psp6I	CCWGG	6 cut(s)	93, 222, 1056, 1151, 1205, 1748
PspGI	CCWGG	6 cut(s)	93, 222, 1056, 1151, 1205, 1748
PspN4I	GGNNCC	7 cut(s)	459, 562, 873, 874, 1415, 1484, 1680
PspPI	GGNCC	6 cut(s)	14, 226, 457, 531, 872, 1287
PspPPI	RGGWCCY	1 cut(s)	872
PsrI	GAACNNNNNNTAC	2 cut(s)	553, 585
PstI	CTGCAG	1 cut(s)	1609
PstNI	CAGNNNCTG	1 cut(s)	223
PvuII	CAGCTG	2 cut(s)	422, 1757
RsaI	GTAC	5 cut(s)	571, 759, 1295, 1415, 1718
RsaNI	GTAC	5 cut(s)	570, 758, 1294, 1414, 1717
SacI	GAGCTC	2 cut(s)	727, 1160
SalI	GTCGAC	1 cut(s)	101
SatI	GCNGC	6 cut(s)	423, 465, 666, 1755, 1758, 1776
Sau3AI	GATC	6 cut(s)	75, 84, 1036, 1078, 1399, 1628
Sau96I	GGNCC	6 cut(s)	14, 226, 457, 531, 872, 1287
SchI	GAGTC	4 cut(s)	74, 199, 1010, 1399
ScrFI	CCNGG	9 cut(s)	80, 95, 224, 461, 1058, 1153, 1207, 1418, 1750
SduI	GDGCHC	6 cut(s)	182, 727, 1160, 1265, 1604, 1641
SfaNI	GCATC	5 cut(s)	16, 129, 951, 1250, 1531
SfcI	CTRYAG	2 cut(s)	1089, 1605
SinI	GGWCC	4 cut(s)	14, 531, 872, 1287
SmlI	CTYRAG	2 cut(s)	113, 323
SmoI	CTYRAG	2 cut(s)	113, 323
SpeI	ACTAGT	1 cut(s)	1547
SspI	AATATT	1 cut(s)	1164
SspMI	CTAG	5 cut(s)	144, 585, 695, 1548, 1796
SstI	GAGCTC	2 cut(s)	727, 1160
StyD4I	CCNGG	9 cut(s)	78, 93, 222, 459, 1056, 1151, 1205, 1416, 1748
StyI	CCWWGG	1 cut(s)	1338
TaaI	ACNGT	4 cut(s)	128, 253, 302, 757
TaiI	ACGT	1 cut(s)	1148
TaqI	TCGA	6 cut(s)	35, 102, 235, 578, 643, 1004
TatI	WGTACW	3 cut(s)	757, 1293, 1716
TfiI	GAWTC	4 cut(s)	511, 1214, 1305, 1781
TscAI	CASTG	3 cut(s)	256, 1372, 1705
TseFI	GTSAC	4 cut(s)	409, 980, 1444, 1475
TseI	GCWGC	6 cut(s)	422, 464, 665, 1754, 1757, 1775
Tsp45I	GTSAC	4 cut(s)	409, 980, 1444, 1475
TspDTI	ATGAA	8 cut(s)	482, 639, 675, 696, 786, 819, 831, 1593
TspGWI	ACGGA	1 cut(s)	645
TspRI	CASTG	3 cut(s)	256, 1372, 1705
Vha464I	CTTAAG	1 cut(s)	113
VpaK11BI	GGWCC	4 cut(s)	14, 531, 872, 1287
XagI	CCTNNNNNAGG	1 cut(s)	519
XapI	RAATTY	5 cut(s)	213, 639, 790, 842, 1787
XcmI	CCANNNNNNNNNTGG	1 cut(s)	403
XmiI	GTMKAC	2 cut(s)	102, 1142
XmnI	GAANNNNTTC	1 cut(s)	687
XspI	CTAG	5 cut(s)	144, 585, 695, 1548, 1796
Zsp2I	ATGCAT	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.