Rorug06G0454500

Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0009976
Physical Location & Seq
Reverse (-)
58270901 .. 58275310
4410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0454500.1

Sequence Viewer

Length: 1383 bp
ATGAGCCCACAGTTCACTTCACCACCAAACAGCGACGCCCATAGTTCTTCTTCTTCTTCAATTTCTTCAGCCAGTGATCGCAGGCTTAACGCTCTCGTACGTCACCTCGCCGCTGAAGAATCGTCTCCGATGGACTCACTCTCCGCTTCCCCGACCGCCGCACGTGCCGATTCCGTCTTCGCTCACGTCGTTCAAGGTCCTGAGGATCCCATCCTTGGGGTGACGGTTGCGTATAACAAGGATCAAAGCCCTAATAAGGTGAATTTGGGAGTTGGTGCTTATCGAACAGAGGAGGGAAAACCACTTGTGTTGAATGTAGTGAGAAAAGCAGAACAGAAGCTTGTTAATGACATGTCACGGGTTAAGGAATATCTTCCTATTGTTGGACTGGCTGAGTTCAATAAATTGAGTGCTAGGCTGATTCTTGGTTCTGACAGCCCTCCTGTTCAAGAGAACCGGGTTACCACTGTCCAATGTCTGTCAGGAACTGGGTCATTGAGGGTTGGAGGTGAATTTTTGGCAAGGCATTACCATGAACGCACCATATATATACCCACACCGACATGGGGGAACCACACCAAAGTTTTCACTCTGGCGGGGTTATCTGTGAAAAATTACCGGTATTATGATCCAGCAACACGTGGCCTCAATTTCCAAGGCCTCCTAGAAGACCTTGGTTCTGCCCCAGCTGGAGCAGTTGTACTTCTTCATGCATGTGCTCATAACCCCACTGGTGTTGATCCAACCCTTGAGCAGTGGGAGCAGATCAGACAGCTTATGAGATCAAGAGCTTTATTACCATTCTTTGACAGTGCTTATCAGGGTTTTGCTAGTGGGAGTTTGGACGCGGATGCACAGTCTGTTCGTAGGTTTGCTGCTGATGGTGGGGAGTTGCTGGTAGCTCAAAGTTATGCAAAAAACATGGGTCTGTATGGGGAACGTGTTGGTGCCCTAAGCATTGTTTTGAAGACTTCTGAGGTTGCAACCAAGGTTGAGAGTCAGCTGAAGCTTGTGATCAGGCCCATGTATTCAAACCCACCTATTCATGGTGCATCTATTGTAGCTACCATTCTCAAGGATAGGGACCTGTTCAATGAATGGACAATTGAATTGAAGGCAATGGCTGACCGTATTATCAGCATGCGACATCAACTATTTGACTCCTTGCGTGCCAAGGGCACTCCTGGTGACTGGAGTCACATAATCAAGCAGATTGGAATGTTTACTTTCACAGGATTGAACCCGGAGCAAGTTGCTTTTATGACTAAAGAGTACCATATTTACATGACATCTGATGGGAGGATTAGCATGGCTGGTCTGAGTTCCAGGACGGTTCCTCATCTTACTGAAGCAATACATGCAGCTGTTACTCGTCTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000228 GO:0000278 GO:0000723 GO:0000724 GO:0000725 GO:0000781 GO:0000784 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005662 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006278 GO:0006279 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007004 GO:0007049 GO:0007063 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010224 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010638 GO:0010639 GO:0010833 GO:0010948 GO:0016043 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022402 GO:0022414 GO:0030894 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032392 GO:0032508 GO:0032879 GO:0032880 GO:0032991 GO:0032993 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035861 GO:0042162 GO:0042592 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044786 GO:0045786 GO:0045839 GO:0045875 GO:0045930 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051098 GO:0051101 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051173 GO:0051276 GO:0051321 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0060249 GO:0060255 GO:0060341 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070034 GO:0071103 GO:0071704 GO:0071840 GO:0071897 GO:0071922 GO:0071923 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0098687 GO:0098847 GO:0106111 GO:0106112 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902969 GO:1903046 GO:1903047 GO:1903827 GO:1903828 GO:1904356 GO:1904358 GO:1905405 GO:1905412 GO:1905634 GO:2000112 GO:2000278 GO:2000573 GO:2001251 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460
Pfam Domains
Protein Families
REPA_OB_2 Rep-A_N Rep_fac-A_C tRNA_anti-codon

Protein Analysis

460

Amino Acids

50.19

Weight (kDa)

8.36

Isoelectric Point (pI)

47.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 85 - 452 5.8e-98 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 947
AccII CGCG 1 cut(s) 848
AciI CCGC 6 cut(s) 111, 144, 156, 159, 596, 848
AclWI GGATC 5 cut(s) 200, 213, 249, 623, 734
AcsI RAATTY 2 cut(s) 262, 512
AcuI CTGAAG 4 cut(s) 51, 135, 1025, 1368
AcvI CACGTG 2 cut(s) 164, 641
AcyI GRCGYC 1 cut(s) 36
AfaI GTAC 3 cut(s) 99, 702, 1274
AfiI CCNNNNNNNGG 6 cut(s) 215, 216, 256, 383, 566, 1046
AflIII ACRYGT 3 cut(s) 351, 638, 940
AgeI ACCGGT 1 cut(s) 618
AjiI CACGTC 1 cut(s) 187
AjnI CCWGG 2 cut(s) 1183, 1325
AluBI AGCT 9 cut(s) 340, 689, 775, 791, 902, 1003, 1009, 1064, 1364
AluI AGCT 9 cut(s) 340, 689, 775, 791, 902, 1003, 1009, 1064, 1364
Alw21I GWGCWC 1 cut(s) 721
Alw26I GTCTC 1 cut(s) 129
AlwI GGATC 5 cut(s) 200, 213, 249, 623, 734
AlwNI CAGNNNCTG 1 cut(s) 488
AoxI GGCC 3 cut(s) 643, 658, 1019
ApeKI GCWGC 2 cut(s) 875, 1361
ApoI RAATTY 2 cut(s) 262, 512
AsiGI ACCGGT 1 cut(s) 618
Asp700I GAANNNNTTC 1 cut(s) 372
AspS9I GGNCC 3 cut(s) 197, 1020, 1084
AsuC2I CCSGG 2 cut(s) 458, 1244
AsuHPI GGTGA 6 cut(s) 12, 95, 232, 271, 521, 1199
AvaII GGWCC 2 cut(s) 197, 1084
AxyI CCTNAGG 1 cut(s) 201
BaeGI GKGCMC 2 cut(s) 952, 1181
BamHI GGATCC 1 cut(s) 205
BanI GGYRCC 1 cut(s) 947
BanII GRGCYC 1 cut(s) 8
BbrPI CACGTG 2 cut(s) 164, 641
BbsI GAAGAC 3 cut(s) 169, 675, 974
Bbv12I GWGCWC 1 cut(s) 721
BbvI GCAGC 2 cut(s) 862, 1373
BccI CCATC 4 cut(s) 124, 218, 875, 1289
BciT130I CCWGG 2 cut(s) 1185, 1327
BclI TGATCA 1 cut(s) 1014
BcnI CCSGG 2 cut(s) 458, 1244
BcoDI GTCTC 1 cut(s) 129
BfaI CTAG 3 cut(s) 414, 665, 831
BisI GCNGC 4 cut(s) 111, 159, 876, 1362
BlsI GCNGC 4 cut(s) 112, 160, 877, 1363
Bme1390I CCNGG 4 cut(s) 458, 1185, 1244, 1327
Bme18I GGWCC 2 cut(s) 197, 1084
BmgBI CACGTC 1 cut(s) 187
BmgT120I GGNCC 3 cut(s) 197, 1020, 1084
BmiI GGNNCC 5 cut(s) 207, 572, 949, 1085, 1335
BmrFI CCNGG 4 cut(s) 458, 1185, 1244, 1327
BmrI ACTGGG 1 cut(s) 498
BmsI GCATC 2 cut(s) 841, 1061
BmuI ACTGGG 1 cut(s) 498
BoxI GACNNNNGTC 1 cut(s) 1194
BpiI GAAGAC 3 cut(s) 169, 675, 974
BpmI CTGGAG 2 cut(s) 711, 1213
Bpu10I CCTNAGC 1 cut(s) 953
BpuEI CTTGAG 2 cut(s) 770, 1058
BpuMI CCSGG 2 cut(s) 458, 1244
BsaAI YACGTR 2 cut(s) 164, 641
BsaHI GRCGYC 1 cut(s) 36
BsaJI CCNNGG 5 cut(s) 214, 655, 673, 987, 1173
BsaWI WCCGGW 1 cut(s) 618
BsaXI ACNNNNNCTCC 4 cut(s) 125, 155, 684, 714
Bsc4I CCNNNNNNNGG 6 cut(s) 215, 216, 256, 383, 566, 1046
Bse118I RCCGGY 1 cut(s) 618
Bse1I ACTGG 5 cut(s) 72, 393, 493, 736, 1196
Bse21I CCTNAGG 1 cut(s) 201
Bse3DI GCAATG 1 cut(s) 1125
BseBI CCWGG 2 cut(s) 1185, 1327
BseDI CCNNGG 5 cut(s) 214, 655, 673, 987, 1173
BseGI GGATG 2 cut(s) 210, 856
BseLI CCNNNNNNNGG 6 cut(s) 215, 216, 256, 383, 566, 1046
BseMI GCAATG 1 cut(s) 1125
BseMII CTCAG 4 cut(s) 192, 384, 966, 1310
BseNI ACTGG 5 cut(s) 72, 393, 493, 736, 1196
BseRI GAGGAG 1 cut(s) 305
BseSI GKGCMC 2 cut(s) 952, 1181
BseXI GCAGC 2 cut(s) 862, 1373
BseYI CCCAGC 1 cut(s) 685
Bsh1236I CGCG 1 cut(s) 848
Bsh1285I CGRYCG 1 cut(s) 156
BshFI GGCC 3 cut(s) 645, 660, 1021
BshNI GGYRCC 1 cut(s) 947
BshTI ACCGGT 1 cut(s) 618
BsiEI CGRYCG 1 cut(s) 156
BsiHKAI GWGCWC 1 cut(s) 721
BsiSI CCGG 3 cut(s) 457, 619, 1244
BsiWI CGTACG 1 cut(s) 97
BslFI GGGAC 1 cut(s) 1097
BslI CCNNNNNNNGG 6 cut(s) 215, 216, 256, 383, 566, 1046
BsmAI GTCTC 1 cut(s) 129
BsmBI CGTCTC 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 1097
BsnI GGCC 3 cut(s) 645, 660, 1021
Bsp1286I GDGCHC 4 cut(s) 8, 721, 952, 1181
Bsp143I GATC 8 cut(s) 76, 205, 241, 628, 739, 765, 782, 1014
BspACI CCGC 6 cut(s) 111, 144, 156, 159, 596, 848
BspANI GGCC 3 cut(s) 645, 660, 1021
BspCNI CTCAG 4 cut(s) 193, 385, 967, 1311
BspFNI CGCG 1 cut(s) 848
BspLI GGNNCC 5 cut(s) 207, 572, 949, 1085, 1335
BspPI GGATC 5 cut(s) 200, 213, 249, 623, 734
BspT107I GGYRCC 1 cut(s) 947
BsrDI GCAATG 1 cut(s) 1125
BsrFI RCCGGY 1 cut(s) 618
BsrI ACTGG 5 cut(s) 72, 393, 493, 736, 1196
BssAI RCCGGY 1 cut(s) 618
BssECI CCNNGG 5 cut(s) 214, 655, 673, 987, 1173
BssMI GATC 8 cut(s) 76, 205, 241, 628, 739, 765, 782, 1014
BssNI GRCGYC 1 cut(s) 36
BssT1I CCWWGG 5 cut(s) 214, 655, 673, 987, 1173
Bst2UI CCWGG 2 cut(s) 1185, 1327
Bst4CI ACNGT 7 cut(s) 12, 226, 469, 812, 858, 1130, 1333
BstACI GRCGYC 1 cut(s) 36
BstAPI GCANNNNNTGC 1 cut(s) 1358
BstBAI YACGTR 2 cut(s) 164, 641
BstC8I GCNNGC 3 cut(s) 83, 1142, 1170
BstDEI CTNAG 5 cut(s) 201, 393, 953, 975, 1319
BstEII GGTNACC 1 cut(s) 460
BstF5I GGATG 2 cut(s) 210, 856
BstFNI CGCG 1 cut(s) 848
BstKTI GATC 8 cut(s) 79, 208, 244, 631, 742, 768, 785, 1017
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 8 cut(s) 76, 205, 241, 628, 739, 765, 782, 1014
BstMCI CGRYCG 1 cut(s) 156
BstMWI GCNNNNNNNGC 3 cut(s) 164, 760, 1358
BstNI CCWGG 2 cut(s) 1185, 1327
BstNSI RCATGY 4 cut(s) 355, 717, 1144, 1361
BstPAI GACNNNNGTC 1 cut(s) 1194
BstPI GGTNACC 1 cut(s) 460
BstSCI CCNGG 4 cut(s) 456, 1183, 1242, 1325
BstSLI GKGCMC 2 cut(s) 952, 1181
BstUI CGCG 1 cut(s) 848
BstV1I GCAGC 2 cut(s) 862, 1373
BstV2I GAAGAC 3 cut(s) 169, 675, 974
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
Bsu36I CCTNAGG 1 cut(s) 201
BsuRI GGCC 3 cut(s) 645, 660, 1021
BtrI CACGTC 1 cut(s) 187
BtsCI GGATG 2 cut(s) 210, 856
BtsI GCAGTG 1 cut(s) 761
BtsIMutI CAGTG 5 cut(s) 79, 465, 729, 761, 817
Cac8I GCNNGC 3 cut(s) 83, 1142, 1170
CaiI CAGNNNCTG 1 cut(s) 488
Cfr10I RCCGGY 1 cut(s) 618
Cfr13I GGNCC 3 cut(s) 197, 1020, 1084
CseI GACGC 2 cut(s) 44, 854
Csp6I GTAC 3 cut(s) 98, 701, 1273
CspAI ACCGGT 1 cut(s) 618
CspCI CAANNNNNGTGG 4 cut(s) 291, 326, 718, 753
CviQI GTAC 3 cut(s) 98, 701, 1273
DdeI CTNAG 5 cut(s) 201, 393, 953, 975, 1319
DpnI GATC 8 cut(s) 78, 207, 243, 630, 741, 767, 784, 1016
DpnII GATC 8 cut(s) 76, 205, 241, 628, 739, 765, 782, 1014
Eco130I CCWWGG 5 cut(s) 214, 655, 673, 987, 1173
Eco147I AGGCCT 1 cut(s) 660
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 2 cut(s) 197, 1084
Eco57I CTGAAG 4 cut(s) 51, 135, 1025, 1368
Eco72I CACGTG 2 cut(s) 164, 641
Eco81I CCTNAGG 1 cut(s) 201
Eco91I GGTNACC 1 cut(s) 460
EcoO109I RGGNCCY 2 cut(s) 197, 1084
EcoO65I GGTNACC 1 cut(s) 460
EcoRII CCWGG 2 cut(s) 1183, 1325
EcoT14I CCWWGG 5 cut(s) 214, 655, 673, 987, 1173
EcoT22I ATGCAT 1 cut(s) 715
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 5 cut(s) 214, 655, 673, 987, 1173
Esp3I CGTCTC 1 cut(s) 129
FaqI GGGAC 1 cut(s) 1097
FauI CCCGC 1 cut(s) 589
FbaI TGATCA 1 cut(s) 1014
Fnu4HI GCNGC 4 cut(s) 111, 159, 876, 1362
FokI GGATG 2 cut(s) 197, 863
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 4 cut(s) 111, 159, 876, 1362
FspBI CTAG 3 cut(s) 414, 665, 831
GluI GCNGC 4 cut(s) 111, 159, 876, 1362
GsaI CCCAGC 1 cut(s) 689
GsuI CTGGAG 2 cut(s) 711, 1213
HaeIII GGCC 3 cut(s) 645, 660, 1021
HapII CCGG 3 cut(s) 457, 619, 1244
HgaI GACGC 2 cut(s) 44, 854
Hin1I GRCGYC 1 cut(s) 36
HindIII AAGCTT 2 cut(s) 338, 1007
HinfI GANTC 7 cut(s) 119, 134, 170, 421, 997, 1160, 1195
HpaII CCGG 3 cut(s) 457, 619, 1244
HphI GGTGA 6 cut(s) 12, 95, 232, 271, 521, 1199
Hpy166II GTNNAC 2 cut(s) 15, 1224
Hpy188I TCNGA 6 cut(s) 129, 433, 770, 976, 1294, 1320
Hpy188III TCNNGA 4 cut(s) 200, 449, 483, 786
Hpy8I GTNNAC 2 cut(s) 15, 1224
Hpy99I CGWCG 2 cut(s) 38, 191
HpyAV CCTTC 1 cut(s) 1108
HpyCH4III ACNGT 7 cut(s) 12, 226, 469, 812, 858, 1130, 1333
HpyCH4IV ACGT 5 cut(s) 100, 163, 186, 640, 940
HpyCH4V TGCA 6 cut(s) 713, 854, 914, 983, 1052, 1361
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 760, 1358
HpyF3I CTNAG 5 cut(s) 201, 393, 953, 975, 1319
HpySE526I ACGT 5 cut(s) 100, 163, 186, 640, 940
Hsp92I GRCGYC 1 cut(s) 36
Ksp22I TGATCA 1 cut(s) 1014
Kzo9I GATC 8 cut(s) 76, 205, 241, 628, 739, 765, 782, 1014
LmnI GCTCC 3 cut(s) 692, 760, 1246
Lsp1109I GCAGC 2 cut(s) 862, 1373
LweI GCATC 2 cut(s) 841, 1061
MaeI CTAG 3 cut(s) 414, 665, 831
MaeII ACGT 5 cut(s) 100, 163, 186, 640, 940
MaeIII GTNAC 7 cut(s) 101, 220, 354, 460, 1187, 1196, 1366
MalI GATC 8 cut(s) 78, 207, 243, 630, 741, 767, 784, 1016
MboI GATC 8 cut(s) 76, 205, 241, 628, 739, 765, 782, 1014
MfeI CAATTG 1 cut(s) 1104
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 4 cut(s) 8, 721, 952, 1181
MluCI AATT 8 cut(s) 60, 262, 404, 512, 613, 649, 1104, 1109
MlyI GAGTC 4 cut(s) 128, 1006, 1154, 1204
MmeI TCCRAC 3 cut(s) 364, 484, 767
Mph1103I ATGCAT 1 cut(s) 715
MroXI GAANNNNTTC 1 cut(s) 372
MseI TTAA 4 cut(s) 87, 345, 363, 1381
MslI CAYNNNNRTG 3 cut(s) 531, 562, 714
MspA1I CMGCKG 4 cut(s) 113, 689, 1003, 1364
MspI CCGG 3 cut(s) 457, 619, 1244
MspR9I CCNGG 4 cut(s) 458, 1185, 1244, 1327
MunI CAATTG 1 cut(s) 1104
MvaI CCWGG 2 cut(s) 1185, 1327
MvnI CGCG 1 cut(s) 848
MwoI GCNNNNNNNGC 3 cut(s) 164, 760, 1358
NciI CCSGG 2 cut(s) 458, 1244
NdeII GATC 8 cut(s) 76, 205, 241, 628, 739, 765, 782, 1014
NlaIV GGNNCC 5 cut(s) 207, 572, 949, 1085, 1335
NmuCI GTSAC 5 cut(s) 101, 220, 354, 1187, 1196
NsiI ATGCAT 1 cut(s) 715
NspI RCATGY 4 cut(s) 355, 717, 1144, 1361
PaeI GCATGC 1 cut(s) 1144
PceI AGGCCT 1 cut(s) 660
PciI ACATGT 1 cut(s) 351
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PdmI GAANNNNTTC 1 cut(s) 372
PfeI GAWTC 3 cut(s) 119, 170, 421
Pfl23II CGTACG 1 cut(s) 97
PfoI TCCNGGA 1 cut(s) 1325
PinAI ACCGGT 1 cut(s) 618
PkrI GCNGC 4 cut(s) 112, 160, 877, 1363
PleI GAGTC 4 cut(s) 128, 1005, 1154, 1203
PmaCI CACGTG 2 cut(s) 164, 641
PmlI CACGTG 2 cut(s) 164, 641
PpsI GAGTC 4 cut(s) 128, 1005, 1154, 1203
Ppu21I YACGTR 2 cut(s) 164, 641
PpuMI RGGWCCY 2 cut(s) 197, 1084
PscI ACATGT 1 cut(s) 351
PshAI GACNNNNGTC 1 cut(s) 1194
Psp5II RGGWCCY 2 cut(s) 197, 1084
Psp6I CCWGG 2 cut(s) 1183, 1325
PspCI CACGTG 2 cut(s) 164, 641
PspEI GGTNACC 1 cut(s) 460
PspFI CCCAGC 1 cut(s) 685
PspGI CCWGG 2 cut(s) 1183, 1325
PspLI CGTACG 1 cut(s) 97
PspN4I GGNNCC 5 cut(s) 207, 572, 949, 1085, 1335
PspPI GGNCC 3 cut(s) 197, 1020, 1084
PspPPI RGGWCCY 2 cut(s) 197, 1084
PstNI CAGNNNCTG 1 cut(s) 488
PsuI RGATCY 1 cut(s) 205
PvuII CAGCTG 3 cut(s) 689, 1003, 1364
RsaI GTAC 3 cut(s) 99, 702, 1274
RsaNI GTAC 3 cut(s) 98, 701, 1273
RseI CAYNNNNRTG 3 cut(s) 531, 562, 714
SaqAI TTAA 4 cut(s) 87, 345, 363, 1381
SatI GCNGC 4 cut(s) 111, 159, 876, 1362
Sau3AI GATC 8 cut(s) 76, 205, 241, 628, 739, 765, 782, 1014
Sau96I GGNCC 3 cut(s) 197, 1020, 1084
SchI GAGTC 4 cut(s) 128, 1006, 1154, 1204
ScrFI CCNGG 4 cut(s) 458, 1185, 1244, 1327
SduI GDGCHC 4 cut(s) 8, 721, 952, 1181
SfaNI GCATC 2 cut(s) 841, 1061
SinI GGWCC 2 cut(s) 197, 1084
SmiMI CAYNNNNRTG 3 cut(s) 531, 562, 714
SmlI CTYRAG 2 cut(s) 749, 1073
SmoI CTYRAG 2 cut(s) 749, 1073
SphI GCATGC 1 cut(s) 1144
Sse9I AATT 8 cut(s) 60, 262, 404, 512, 613, 649, 1104, 1109
SseBI AGGCCT 1 cut(s) 660
SsiI CCGC 6 cut(s) 111, 144, 156, 159, 596, 848
SspMI CTAG 3 cut(s) 414, 665, 831
StuI AGGCCT 1 cut(s) 660
StyD4I CCNGG 4 cut(s) 456, 1183, 1242, 1325
StyI CCWWGG 5 cut(s) 214, 655, 673, 987, 1173
TaaI ACNGT 7 cut(s) 12, 226, 469, 812, 858, 1130, 1333
TaiI ACGT 5 cut(s) 103, 166, 189, 643, 943
TaqI TCGA 1 cut(s) 283
TasI AATT 8 cut(s) 60, 262, 404, 512, 613, 649, 1104, 1109
TatI WGTACW 1 cut(s) 700
TauI GCSGC 2 cut(s) 113, 161
TfiI GAWTC 3 cut(s) 119, 170, 421
Tru1I TTAA 4 cut(s) 87, 345, 363, 1381
Tru9I TTAA 4 cut(s) 87, 345, 363, 1381
TscAI CASTG 5 cut(s) 79, 472, 736, 761, 817
TseFI GTSAC 5 cut(s) 101, 220, 354, 1187, 1196
TseI GCWGC 2 cut(s) 875, 1361
Tsp45I GTSAC 5 cut(s) 101, 220, 354, 1187, 1196
TspDTI ATGAA 4 cut(s) 549, 698, 1034, 1110
TspGWI ACGGA 1 cut(s) 163
TspRI CASTG 5 cut(s) 79, 472, 736, 761, 817
VpaK11BI GGWCC 2 cut(s) 197, 1084
XapI RAATTY 2 cut(s) 262, 512
XceI RCATGY 4 cut(s) 355, 717, 1144, 1361
XmnI GAANNNNTTC 1 cut(s) 372
XspI CTAG 3 cut(s) 414, 665, 831
Zsp2I ATGCAT 1 cut(s) 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.