Prupe.5G205700_v2.0.a1

Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0009976
Physical Location & Seq
Forward (+)
16442953 .. 16446672
3720 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G205700.1

Sequence Viewer

Length: 1830 bp
ATGGCGAAGCTAGGACCAACCCCAGATGCGATTTCGACCATTTTGGCCTGTCCGGATCCGAGTGGGTCGGTTGAGCGGCCCGATATCGTGATCCAGGTCCTCGATCTCGGTCCCAGGGGCATTACTTACAAGTTTACTGCTAGTGATGGAAAGATGAAGCTAAAGGGGATGTTCTCCTCCCAGCTGGCTTCCCAGATTACCTCTGGGAACATTCAGAACCTGGGTCTCGTTCGCATTCTGGATTATGCTGTTAATGAGATTCCTGGCATGTCTGAAAACTATGTGCTTGTAAAACAATGCGAGGTGGTTTCACCTGCACTTGAGACAGAGATAAAAAATGAGGTCAAAAGTGAGGTGAAAAGTGGAGAAGTTGGCATTATTTTGAAACCCAAGCAAGAAATGGTTTCCAAATCAGCTTCTCAAATTGTGCATGAGCAGAATGGAAATATGGCCCCGGCTGTGCGAATGGCCATGACCCGGAGGGTGCATCCGCTTGTTTCCTTGAATCCTTACCAAGGAAATTGGACCATAAAGGTTCGTGTTACAAACAAGGGTACTATGCGTACCTACAAGAATGCTAGAGGTGAAGGCTGTGTCTTCAATGTGGAGTTAACAGATGAAGAAGGCACACAAATTCAAGCAACAATGTTTAATGAAGCTGCAAAGAAGTTCTTTGAGAAGTTTGAATTAGGAAAGGTTTATTACATTTCAAAGGGATCTCTAAGGGTTGCTAACAAGCAGTTTAAGACAGTGCAAAATGATTATGAAATGAATTTAAATGAGAATTCTGAGGTTGAAGAAGCTATCAATGAAGCAGCTTTTGTTCCTGAAACAAAATTCAATTTTGTTCCAGTTGATATGTTAGGTCCCCATGTTAATGGGAAGGAGCTTGTGGATGTCATTGGAGTTGTTCAAAGTGTGTCTCCTACAATGAGCATCAGAAGGAAGAGCAACAATGAGAGTATTCCAAAGCGTGATATTACCATTGCTGATGAAACGAAAAAGACAGTTGTGGTTTCTCTGTGGGGTGAGCTTGCAACTAGTGTAGGCCAGGAACTGCTTGACATTGCCGATCAATCTCCCATAGTTGCTATCAAGTCCCTCAAAGTTGGAGACTTCCAAGGTGTGTCATTGTCAACACTGAGCAGGAGCACAGTAGTAGTCAATCCTGAATTACCTGAAGCAAAGAGGTTGAGGTCCTGGTATGATTCTGAAGGTAAAGGGGCTTCATTGGCCTCTGTTGGCAATGGTATGAGCCCTTTAGCCAAGAGTGGAGCAAGGTCCATGTACTCTGACAGAGTCTCCTTGTCTCATATATCTGATGACCCATCCTTGGGTGAGGATAAGCCTGTGTTTTTCAGTGTTAAAGCGTTTATAAGTTCCATCAGGCCTGATCAGGCACTGTGGTACCGTGCTTGCAAAACTTGCAACAAGAAAGTAACTGAAGCTATTGGGTCTGGTTATTGGTGTGAAGCGTGCCAGAAAAATGATGAAGAATGCAGTTTAAGGTATATATTAGTTGCAAGAGTCACTGACGCAAGTGGGGAAGCATATCTTTCTCTATTTAATGAAGAAGCAGAGAGGGTTATTGGGTGCTCTGCAGATGAGCTGGACAAATTGAAATCACAGGAGGGAGAGGAGAACGTATACCAACTGAAGCTGAAACAAGCTACTTGGGTTCCTCATCTTTTTCGGGTCAGTGTTTCTCAGAACGAGTACAATAACGAGAAGAGGAAAAGGATAACTGCCAGGGCAGTTGCTCCTGTTGATTTTGCTGCTGAATCAAAGTTTTTGCTAGAAGAGATATCAAAGATGAAAGCTTCCCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000228 GO:0000278 GO:0000723 GO:0000724 GO:0000725 GO:0000781 GO:0000784 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005662 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006278 GO:0006279 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007004 GO:0007049 GO:0007063 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010224 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010638 GO:0010639 GO:0010833 GO:0010948 GO:0016043 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022402 GO:0022414 GO:0030894 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032392 GO:0032508 GO:0032879 GO:0032880 GO:0032991 GO:0032993 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035861 GO:0042162 GO:0042592 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044786 GO:0045786 GO:0045839 GO:0045875 GO:0045930 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051098 GO:0051101 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051173 GO:0051276 GO:0051321 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0060249 GO:0060255 GO:0060341 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070034 GO:0071103 GO:0071704 GO:0071840 GO:0071897 GO:0071922 GO:0071923 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0098687 GO:0098847 GO:0106111 GO:0106112 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902969 GO:1903046 GO:1903047 GO:1903827 GO:1903828 GO:1904356 GO:1904358 GO:1905405 GO:1905412 GO:1905634 GO:2000112 GO:2000278 GO:2000573 GO:2001251 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460
Pfam Domains
Protein Families
REPA_OB_2 Rep-A_N Rep_fac-A_C tRNA_anti-codon

Protein Analysis

610

Amino Acids

67.22

Weight (kDa)

6.36

Isoelectric Point (pI)

38.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1376
AarI CACCTGC 1 cut(s) 322
Acc36I ACCTGC 1 cut(s) 322
Acc65I GGTACC 1 cut(s) 1407
AccB1I GGYRCC 1 cut(s) 1407
AccBSI CCGCTC 1 cut(s) 76
AccI GTMKAC 1 cut(s) 1647
AccIII TCCGGA 1 cut(s) 52
AciI CCGC 2 cut(s) 76, 491
AclWI GGATC 4 cut(s) 50, 63, 85, 724
AcoI YGGCCR 1 cut(s) 468
AcsI RAATTY 4 cut(s) 633, 772, 784, 836
AcuI CTGAAG 4 cut(s) 1200, 1233, 1464, 1676
AfaI GTAC 5 cut(s) 556, 565, 1289, 1409, 1718
AfiI CCNNNNNNNGG 4 cut(s) 477, 515, 1333, 1334
AhlI ACTAGT 1 cut(s) 1040
AjnI CCWGG 7 cut(s) 93, 113, 219, 262, 1050, 1199, 1748
Alw21I GWGCWC 2 cut(s) 1154, 1598
Alw26I GTCTC 6 cut(s) 230, 317, 927, 1107, 1306, 1314
AlwI GGATC 4 cut(s) 50, 63, 85, 724
AlwNI CAGNNNCTG 3 cut(s) 220, 1057, 1402
Aor13HI TCCGGA 1 cut(s) 52
AoxI GGCC 7 cut(s) 45, 77, 450, 468, 1048, 1233, 1388
ApeKI GCWGC 3 cut(s) 659, 815, 1775
ApoI RAATTY 4 cut(s) 633, 772, 784, 836
Asp718I GGTACC 1 cut(s) 1407
AspS9I GGNCC 9 cut(s) 14, 78, 97, 110, 451, 525, 866, 1197, 1281
AsuC2I CCSGG 2 cut(s) 455, 478
AsuHPI GGTGA 5 cut(s) 303, 367, 596, 1040, 1349
AvaII GGWCC 7 cut(s) 14, 97, 110, 525, 866, 1197, 1281
BaeI ACNNNNGTAYC 2 cut(s) 1391, 1424
BalI TGGCCA 1 cut(s) 470
BamHI GGATCC 1 cut(s) 55
BanI GGYRCC 1 cut(s) 1407
BanII GRGCYC 1 cut(s) 1259
BarI GAAGNNNNNNTAC 2 cut(s) 1210, 1242
BbsI GAAGAC 1 cut(s) 589
Bbv12I GWGCWC 2 cut(s) 1154, 1598
BbvI GCAGC 3 cut(s) 646, 827, 1762
BccI CCATC 3 cut(s) 140, 1336, 1391
BciT130I CCWGG 7 cut(s) 95, 115, 221, 264, 1052, 1201, 1750
BclI TGATCA 1 cut(s) 1393
BcnI CCSGG 2 cut(s) 455, 478
BcoDI GTCTC 6 cut(s) 230, 317, 927, 1107, 1306, 1314
BcuI ACTAGT 1 cut(s) 1040
BfaI CTAG 5 cut(s) 11, 141, 579, 1041, 1796
BfmI CTRYAG 1 cut(s) 1599
BfuAI ACCTGC 1 cut(s) 322
BisI GCNGC 4 cut(s) 77, 660, 816, 1776
BlsI GCNGC 4 cut(s) 78, 661, 817, 1777
Bme1390I CCNGG 9 cut(s) 95, 115, 221, 264, 455, 478, 1052, 1201, 1750
Bme18I GGWCC 7 cut(s) 14, 97, 110, 525, 866, 1197, 1281
BmgT120I GGNCC 9 cut(s) 14, 78, 97, 110, 451, 525, 866, 1197, 1281
BmiI GGNNCC 6 cut(s) 57, 112, 453, 868, 1409, 1680
BmrFI CCNGG 9 cut(s) 95, 115, 221, 264, 455, 478, 1052, 1201, 1750
BmsI GCATC 3 cut(s) 16, 496, 945
BpiI GAAGAC 1 cut(s) 589
BpuEI CTTGAG 1 cut(s) 341
BpuMI CCSGG 2 cut(s) 455, 478
BsaI GGTCTC 1 cut(s) 230
BsaJI CCNNGG 8 cut(s) 113, 114, 220, 453, 514, 1120, 1332, 1749
BsaWI WCCGGW 1 cut(s) 52
BsaXI ACNNNNNCTCC 2 cut(s) 1286, 1316
Bsc4I CCNNNNNNNGG 4 cut(s) 477, 515, 1333, 1334
Bse1I ACTGG 1 cut(s) 851
Bse3DI GCAATG 3 cut(s) 984, 1065, 1252
BseAI TCCGGA 1 cut(s) 52
BseBI CCWGG 7 cut(s) 95, 115, 221, 264, 1052, 1201, 1750
BseDI CCNNGG 8 cut(s) 113, 114, 220, 453, 514, 1120, 1332, 1749
BseGI GGATG 4 cut(s) 174, 487, 901, 1328
BseLI CCNNNNNNNGG 4 cut(s) 477, 515, 1333, 1334
BseMI GCAATG 3 cut(s) 984, 1065, 1252
BseMII CTCAG 3 cut(s) 780, 1133, 1721
BseNI ACTGG 1 cut(s) 851
BseRI GAGGAG 2 cut(s) 166, 1652
BseXI GCAGC 3 cut(s) 646, 827, 1762
BseYI CCCAGC 1 cut(s) 180
BsgI GTGCAG 1 cut(s) 300
BshFI GGCC 7 cut(s) 47, 79, 452, 470, 1050, 1235, 1390
BshNI GGYRCC 1 cut(s) 1407
BsiHKAI GWGCWC 2 cut(s) 1154, 1598
BsiSI CCGG 3 cut(s) 53, 455, 478
BslFI GGGAC 3 cut(s) 96, 852, 1084
BslI CCNNNNNNNGG 4 cut(s) 477, 515, 1333, 1334
BsmAI GTCTC 6 cut(s) 230, 317, 927, 1107, 1306, 1314
BsmFI GGGAC 3 cut(s) 96, 852, 1084
BsmI GAATGC 3 cut(s) 234, 580, 1502
BsnI GGCC 7 cut(s) 47, 79, 452, 470, 1050, 1235, 1390
Bso31I GGTCTC 1 cut(s) 230
Bsp1286I GDGCHC 3 cut(s) 1154, 1259, 1598
Bsp13I TCCGGA 1 cut(s) 52
Bsp143I GATC 6 cut(s) 55, 90, 103, 716, 1072, 1393
BspACI CCGC 2 cut(s) 76, 491
BspANI GGCC 7 cut(s) 47, 79, 452, 470, 1050, 1235, 1390
BspCNI CTCAG 3 cut(s) 781, 1134, 1720
BspEI TCCGGA 1 cut(s) 52
BspLI GGNNCC 6 cut(s) 57, 112, 453, 868, 1409, 1680
BspMAI CTGCAG 1 cut(s) 1603
BspMI ACCTGC 1 cut(s) 322
BspPI GGATC 4 cut(s) 50, 63, 85, 724
BspQI GCTCTTC 1 cut(s) 941
BspT107I GGYRCC 1 cut(s) 1407
BspTNI GGTCTC 1 cut(s) 230
BsrBI CCGCTC 1 cut(s) 76
BsrDI GCAATG 3 cut(s) 984, 1065, 1252
BsrI ACTGG 1 cut(s) 851
BssECI CCNNGG 8 cut(s) 113, 114, 220, 453, 514, 1120, 1332, 1749
BssMI GATC 6 cut(s) 55, 90, 103, 716, 1072, 1393
BssNAI GTATAC 1 cut(s) 1648
BssT1I CCWWGG 3 cut(s) 514, 1120, 1332
Bst1107I GTATAC 1 cut(s) 1648
Bst2UI CCWGG 7 cut(s) 95, 115, 221, 264, 1052, 1201, 1750
Bst4CI ACNGT 5 cut(s) 751, 1009, 1156, 1404, 1412
Bst6I CTCTTC 3 cut(s) 941, 1724, 1794
BstAPI GCANNNNNTGC 1 cut(s) 1425
BstC8I GCNNGC 4 cut(s) 186, 1035, 1417, 1477
BstDEI CTNAG 4 cut(s) 722, 789, 1142, 1707
BstENI CCTNNNNNAGG 1 cut(s) 513
BstF5I GGATG 4 cut(s) 174, 487, 901, 1328
BstKTI GATC 6 cut(s) 58, 93, 106, 719, 1075, 1396
BstMAI GTCTC 6 cut(s) 230, 317, 927, 1107, 1306, 1314
BstMBI GATC 6 cut(s) 55, 90, 103, 716, 1072, 1393
BstMWI GCNNNNNNNGC 2 cut(s) 1232, 1425
BstNI CCWGG 7 cut(s) 95, 115, 221, 264, 1052, 1201, 1750
BstNSI RCATGY 1 cut(s) 271
BstSCI CCNGG 9 cut(s) 93, 113, 219, 262, 453, 476, 1050, 1199, 1748
BstSFI CTRYAG 1 cut(s) 1599
BstV1I GCAGC 3 cut(s) 646, 827, 1762
BstV2I GAAGAC 1 cut(s) 589
BstX2I RGATCY 2 cut(s) 55, 716
BstXI CCANNNNNNTGG 1 cut(s) 878
BstYI RGATCY 2 cut(s) 55, 716
BstZ17I GTATAC 1 cut(s) 1648
BsuRI GGCC 7 cut(s) 47, 79, 452, 470, 1050, 1235, 1390
BtsCI GGATG 4 cut(s) 174, 487, 901, 1328
BtsIMutI CAGTG 6 cut(s) 756, 1139, 1366, 1400, 1530, 1705
BveI ACCTGC 1 cut(s) 322
Cac8I GCNNGC 4 cut(s) 186, 1035, 1417, 1477
CaiI CAGNNNCTG 3 cut(s) 220, 1057, 1402
Cfr13I GGNCC 9 cut(s) 14, 78, 97, 110, 451, 525, 866, 1197, 1281
CseI GACGC 1 cut(s) 1544
Csp6I GTAC 5 cut(s) 555, 564, 1288, 1408, 1717
CviAII CATG 5 cut(s) 268, 431, 472, 872, 1285
CviQI GTAC 5 cut(s) 555, 564, 1288, 1408, 1717
DdeI CTNAG 4 cut(s) 722, 789, 1142, 1707
DpnI GATC 6 cut(s) 57, 92, 105, 718, 1074, 1395
DpnII GATC 6 cut(s) 55, 90, 103, 716, 1072, 1393
DraI TTTAAA 1 cut(s) 777
EaeI YGGCCR 1 cut(s) 468
Eam1104I CTCTTC 3 cut(s) 941, 1724, 1794
EarI CTCTTC 3 cut(s) 941, 1724, 1794
Eco130I CCWWGG 3 cut(s) 514, 1120, 1332
Eco147I AGGCCT 1 cut(s) 1390
Eco24I GRGCYC 1 cut(s) 1259
Eco31I GGTCTC 1 cut(s) 230
Eco32I GATATC 2 cut(s) 85, 1806
Eco47I GGWCC 7 cut(s) 14, 97, 110, 525, 866, 1197, 1281
Eco57I CTGAAG 4 cut(s) 1200, 1233, 1464, 1676
EcoNI CCTNNNNNAGG 1 cut(s) 513
EcoO109I RGGNCCY 3 cut(s) 97, 866, 1197
EcoRI GAATTC 1 cut(s) 784
EcoRII CCWGG 7 cut(s) 93, 113, 219, 262, 1050, 1199, 1748
EcoRV GATATC 2 cut(s) 85, 1806
EcoT14I CCWWGG 3 cut(s) 514, 1120, 1332
EcoT38I GRGCYC 1 cut(s) 1259
ErhI CCWWGG 3 cut(s) 514, 1120, 1332
FaeI CATG 5 cut(s) 271, 434, 475, 875, 1288
FalI AAGNNNNNCTT 4 cut(s) 656, 688, 1539, 1571
FaqI GGGAC 3 cut(s) 96, 852, 1084
FatI CATG 5 cut(s) 267, 430, 471, 871, 1284
FbaI TGATCA 1 cut(s) 1393
FblI GTMKAC 1 cut(s) 1647
Fnu4HI GCNGC 4 cut(s) 77, 660, 816, 1776
FokI GGATG 4 cut(s) 181, 474, 908, 1315
FriOI GRGCYC 1 cut(s) 1259
Fsp4HI GCNGC 4 cut(s) 77, 660, 816, 1776
FspBI CTAG 5 cut(s) 11, 141, 579, 1041, 1796
GluI GCNGC 4 cut(s) 77, 660, 816, 1776
GsaI CCCAGC 1 cut(s) 184
HaeIII GGCC 7 cut(s) 47, 79, 452, 470, 1050, 1235, 1390
HapII CCGG 3 cut(s) 53, 455, 478
HgaI GACGC 1 cut(s) 1544
Hin1II CATG 5 cut(s) 271, 434, 475, 875, 1288
HincII GTYRAC 2 cut(s) 612, 1137
HindII GTYRAC 2 cut(s) 612, 1137
HindIII AAGCTT 1 cut(s) 1818
HinfI GANTC 6 cut(s) 259, 505, 1208, 1299, 1527, 1781
HpaI GTTAAC 1 cut(s) 612
HpaII CCGG 3 cut(s) 53, 455, 478
HphI GGTGA 5 cut(s) 303, 367, 596, 1040, 1349
Hpy166II GTNNAC 4 cut(s) 135, 612, 1137, 1648
Hpy188I TCNGA 9 cut(s) 60, 216, 274, 790, 941, 1213, 1294, 1321, 1710
Hpy188III TCNNGA 5 cut(s) 53, 88, 239, 827, 1169
Hpy8I GTNNAC 4 cut(s) 135, 612, 1137, 1648
HpyAV CCTTC 5 cut(s) 581, 617, 877, 936, 1208
HpyCH4III ACNGT 5 cut(s) 751, 1009, 1156, 1404, 1412
HpyCH4IV ACGT 1 cut(s) 1644
HpyF10VI GCNNNNNNNGC 2 cut(s) 1232, 1425
HpyF3I CTNAG 4 cut(s) 722, 789, 1142, 1707
HpySE526I ACGT 1 cut(s) 1644
Hsp92II CATG 5 cut(s) 271, 434, 475, 875, 1288
Kpn2I TCCGGA 1 cut(s) 52
KpnI GGTACC 1 cut(s) 1411
Ksp22I TGATCA 1 cut(s) 1393
KspAI GTTAAC 1 cut(s) 612
Kzo9I GATC 6 cut(s) 55, 90, 103, 716, 1072, 1393
LguI GCTCTTC 1 cut(s) 941
LmnI GCTCC 4 cut(s) 886, 1149, 1274, 1765
Lsp1109I GCAGC 3 cut(s) 646, 827, 1762
LweI GCATC 3 cut(s) 16, 496, 945
MaeI CTAG 5 cut(s) 11, 141, 579, 1041, 1796
MaeII ACGT 1 cut(s) 1644
MaeIII GTNAC 3 cut(s) 541, 1438, 1528
MalI GATC 6 cut(s) 57, 92, 105, 718, 1074, 1395
MbiI CCGCTC 1 cut(s) 76
MboI GATC 6 cut(s) 55, 90, 103, 716, 1072, 1393
MboII GAAGA 8 cut(s) 589, 632, 809, 958, 1505, 1583, 1741, 1811
MflI RGATCY 2 cut(s) 55, 716
MhlI GDGCHC 3 cut(s) 1154, 1259, 1598
MlsI TGGCCA 1 cut(s) 470
MluNI TGGCCA 1 cut(s) 470
MlyI GAGTC 2 cut(s) 1308, 1536
MmeI TCCRAC 1 cut(s) 1090
Mox20I TGGCCA 1 cut(s) 470
MroI TCCGGA 1 cut(s) 52
MscI TGGCCA 1 cut(s) 470
MseI TTAA 9 cut(s) 252, 611, 651, 744, 776, 876, 1365, 1505, 1566
MslI CAYNNNNRTG 1 cut(s) 876
Msp20I TGGCCA 1 cut(s) 470
MspA1I CMGCKG 1 cut(s) 184
MspI CCGG 3 cut(s) 53, 455, 478
MspR9I CCNGG 9 cut(s) 95, 115, 221, 264, 455, 478, 1052, 1201, 1750
Mva1269I GAATGC 3 cut(s) 234, 580, 1502
MvaI CCWGG 7 cut(s) 95, 115, 221, 264, 1052, 1201, 1750
MwoI GCNNNNNNNGC 2 cut(s) 1232, 1425
NciI CCSGG 2 cut(s) 455, 478
NdeII GATC 6 cut(s) 55, 90, 103, 716, 1072, 1393
NlaIII CATG 5 cut(s) 271, 434, 475, 875, 1288
NlaIV GGNNCC 6 cut(s) 57, 112, 453, 868, 1409, 1680
NmuCI GTSAC 1 cut(s) 1528
NspI RCATGY 1 cut(s) 271
PaqCI CACCTGC 1 cut(s) 322
PasI CCCWGGG 1 cut(s) 114
PceI AGGCCT 1 cut(s) 1390
PciSI GCTCTTC 1 cut(s) 941
PctI GAATGC 3 cut(s) 234, 580, 1502
PfeI GAWTC 4 cut(s) 259, 505, 1208, 1781
PflFI GACNNNGTC 1 cut(s) 1298
PkrI GCNGC 4 cut(s) 78, 661, 817, 1777
PleI GAGTC 2 cut(s) 1307, 1535
PpsI GAGTC 2 cut(s) 1307, 1535
PpuMI RGGWCCY 3 cut(s) 97, 866, 1197
PsiI TTATAA 1 cut(s) 1376
Psp5II RGGWCCY 3 cut(s) 97, 866, 1197
Psp6I CCWGG 7 cut(s) 93, 113, 219, 262, 1050, 1199, 1748
PspFI CCCAGC 1 cut(s) 180
PspGI CCWGG 7 cut(s) 93, 113, 219, 262, 1050, 1199, 1748
PspN4I GGNNCC 6 cut(s) 57, 112, 453, 868, 1409, 1680
PspPI GGNCC 9 cut(s) 14, 78, 97, 110, 451, 525, 866, 1197, 1281
PspPPI RGGWCCY 3 cut(s) 97, 866, 1197
PstI CTGCAG 1 cut(s) 1603
PstNI CAGNNNCTG 3 cut(s) 220, 1057, 1402
PsuI RGATCY 2 cut(s) 55, 716
PsyI GACNNNGTC 1 cut(s) 1298
PvuII CAGCTG 1 cut(s) 184
RsaI GTAC 5 cut(s) 556, 565, 1289, 1409, 1718
RsaNI GTAC 5 cut(s) 555, 564, 1288, 1408, 1717
RseI CAYNNNNRTG 1 cut(s) 876
SapI GCTCTTC 1 cut(s) 941
SaqAI TTAA 9 cut(s) 252, 611, 651, 744, 776, 876, 1365, 1505, 1566
SatI GCNGC 4 cut(s) 77, 660, 816, 1776
Sau3AI GATC 6 cut(s) 55, 90, 103, 716, 1072, 1393
Sau96I GGNCC 9 cut(s) 14, 78, 97, 110, 451, 525, 866, 1197, 1281
SchI GAGTC 2 cut(s) 1308, 1536
ScrFI CCNGG 9 cut(s) 95, 115, 221, 264, 455, 478, 1052, 1201, 1750
SduI GDGCHC 3 cut(s) 1154, 1259, 1598
SfaNI GCATC 3 cut(s) 16, 496, 945
SfcI CTRYAG 1 cut(s) 1599
SinI GGWCC 7 cut(s) 14, 97, 110, 525, 866, 1197, 1281
SmiI ATTTAAAT 1 cut(s) 777
SmiMI CAYNNNNRTG 1 cut(s) 876
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
SpeI ACTAGT 1 cut(s) 1040
SseBI AGGCCT 1 cut(s) 1390
SsiI CCGC 2 cut(s) 76, 491
SspMI CTAG 5 cut(s) 11, 141, 579, 1041, 1796
StuI AGGCCT 1 cut(s) 1390
StyD4I CCNGG 9 cut(s) 93, 113, 219, 262, 453, 476, 1050, 1199, 1748
StyI CCWWGG 3 cut(s) 514, 1120, 1332
SwaI ATTTAAAT 1 cut(s) 777
TaaI ACNGT 5 cut(s) 751, 1009, 1156, 1404, 1412
TaiI ACGT 1 cut(s) 1647
TaqI TCGA 2 cut(s) 35, 102
TaqII GACCGA 1 cut(s) 98
TatI WGTACW 2 cut(s) 1287, 1716
TauI GCSGC 1 cut(s) 79
TfiI GAWTC 4 cut(s) 259, 505, 1208, 1781
Tru1I TTAA 9 cut(s) 252, 611, 651, 744, 776, 876, 1365, 1505, 1566
Tru9I TTAA 9 cut(s) 252, 611, 651, 744, 776, 876, 1365, 1505, 1566
TscAI CASTG 6 cut(s) 756, 1146, 1366, 1407, 1537, 1705
TseFI GTSAC 1 cut(s) 1528
TseI GCWGC 3 cut(s) 659, 815, 1775
Tsp45I GTSAC 1 cut(s) 1528
TspRI CASTG 6 cut(s) 756, 1146, 1366, 1407, 1537, 1705
Tth111I GACNNNGTC 1 cut(s) 1298
VpaK11BI GGWCC 7 cut(s) 14, 97, 110, 525, 866, 1197, 1281
XagI CCTNNNNNAGG 1 cut(s) 513
XapI RAATTY 4 cut(s) 633, 772, 784, 836
XceI RCATGY 1 cut(s) 271
XcmI CCANNNNNNNNNTGG 2 cut(s) 200, 397
XmiI GTMKAC 1 cut(s) 1647
XspI CTAG 5 cut(s) 11, 141, 579, 1041, 1796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.