Rmu_sc0038240.1_g000001

Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038240.1
OG0009976
Physical Location & Seq
Forward (+)
1 .. 1900
1900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038240.1_g000001.1.cds

Sequence Viewer

Length: 1066 bp
tatggccccggctgcacggatggccatgaccagaagggttcatcctattgtttccttgaatccttatcaaggcaattggaccataaaggttcgtgttacaaacaagggaaccatgcgtacttactcgaatgctagaggtcaaggctatgtcttcaatgtggagttaacagatgaagatggaactgaaattcgagctacaatgtttaatgaagctgcaaagaagttctatgaaaagtttcaactagggaaggtctattatgtttcaaagggagctctaaaggttgctaacaagaagtttagcacagtacaaaatgattatgaaatgaccttaaatgagaattctgaggtggatgaagtcagcaatgaagaagcttttgttcctgaaacaaaatttgattttatcccaattgatatgttgggtccccatgttaacagcaaggtgcttgtggatgttattggagttgttacaaatgtgtctcctacaatgagcatcagaagaaagagcgacaatgagaatatcccaaagcgtgacattaccattgctgatgagtcgaaaaaagtggttgtggtttctttatggaatgatcttgcaactggtgttggccaggaattgctggacattgctgatcaatctcctgtagttgctatcaaatcccttaaagttggagactatcaaggtgtatccttgtctacgttgtccaggagctcaatatttgtaaatccagatttacctgaagcaaagaggttgaaatcctggtatgattctgaaggtaaagaggtttcaatggcatctgttggctctggtatgagcccatcagccaatagtggagcatggtccatgtactctgatagaatctccctgtcttatttgaaagataacccgtccttgggtgaggacaagcctgtgtttttcagtgttaaagcttatataagctccatcaagcctgatcagactctctggtaccgggcttgcaaaatgtgcaacaaaaaggtgactgaaagtctggatggtggtttctggtgtgacgggtgccagaaaaatgctgaagaatgcagtttaaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000228 GO:0000278 GO:0000723 GO:0000724 GO:0000725 GO:0000781 GO:0000784 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005662 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006278 GO:0006279 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007004 GO:0007049 GO:0007063 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010224 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010638 GO:0010639 GO:0010833 GO:0010948 GO:0016043 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022402 GO:0022414 GO:0030894 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032392 GO:0032508 GO:0032879 GO:0032880 GO:0032991 GO:0032993 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035861 GO:0042162 GO:0042592 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044786 GO:0045786 GO:0045839 GO:0045875 GO:0045930 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051098 GO:0051101 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051173 GO:0051276 GO:0051321 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0060249 GO:0060255 GO:0060341 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070034 GO:0071103 GO:0071704 GO:0071840 GO:0071897 GO:0071922 GO:0071923 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0098687 GO:0098847 GO:0106111 GO:0106112 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902969 GO:1903046 GO:1903047 GO:1903827 GO:1903828 GO:1904356 GO:1904358 GO:1905405 GO:1905412 GO:1905634 GO:2000112 GO:2000278 GO:2000573 GO:2001251 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460
Pfam Domains
Protein Families
REPA_OB_2 Rep-A_N Rep_fac-A_C tRNA_anti-codon

Protein Analysis

354

Amino Acids

39.4

Weight (kDa)

6.77

Isoelectric Point (pI)

37.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 961
AccB1I GGYRCC 2 cut(s) 961, 1030
AccI GTMKAC 1 cut(s) 690
AcoI YGGCCR 2 cut(s) 22, 602
AcsI RAATTY 3 cut(s) 187, 338, 390
AcuI CTGAAG 3 cut(s) 754, 787, 1066
AfaI GTAC 4 cut(s) 119, 307, 843, 963
AfiI CCNNNNNNNGG 3 cut(s) 69, 887, 888
AgsI TTSAA 7 cut(s) 59, 155, 240, 265, 749, 784, 872
AhdI GACNNNNNGTC 1 cut(s) 1000
AjnI CCWGG 3 cut(s) 604, 699, 753
AluBI AGCT 7 cut(s) 195, 213, 273, 372, 706, 924, 934
AluI AGCT 7 cut(s) 195, 213, 273, 372, 706, 924, 934
Alw21I GWGCWC 2 cut(s) 275, 708
Alw26I GTCTC 2 cut(s) 481, 661
AoxI GGCC 3 cut(s) 4, 22, 602
ApeKI GCWGC 2 cut(s) 12, 213
ApoI RAATTY 3 cut(s) 187, 338, 390
Asp700I GAANNNNTTC 1 cut(s) 235
Asp718I GGTACC 1 cut(s) 961
AspS9I GGNCC 4 cut(s) 5, 79, 420, 835
AsuC2I CCSGG 2 cut(s) 9, 966
AsuHPI GGTGA 2 cut(s) 903, 1004
AvaII GGWCC 3 cut(s) 79, 420, 835
BalI TGGCCA 2 cut(s) 24, 604
BanI GGYRCC 2 cut(s) 961, 1030
BanII GRGCYC 3 cut(s) 275, 708, 813
BbsI GAAGAC 1 cut(s) 143
Bbv12I GWGCWC 2 cut(s) 275, 708
BbvI GCAGC 1 cut(s) 200
BccI CCATC 5 cut(s) 14, 171, 821, 945, 1002
BciT130I CCWGG 3 cut(s) 606, 701, 755
BciVI GTATCC 1 cut(s) 692
BclI TGATCA 2 cut(s) 626, 947
BcnI CCSGG 2 cut(s) 9, 966
BcoDI GTCTC 2 cut(s) 481, 661
BfaI CTAG 2 cut(s) 133, 243
BfmI CTRYAG 1 cut(s) 637
BfuI GTATCC 1 cut(s) 692
BisI GCNGC 2 cut(s) 13, 214
BlsI GCNGC 2 cut(s) 14, 215
Bme1390I CCNGG 5 cut(s) 9, 606, 701, 755, 966
Bme18I GGWCC 3 cut(s) 79, 420, 835
BmeRI GACNNNNNGTC 1 cut(s) 1000
BmgT120I GGNCC 4 cut(s) 5, 79, 420, 835
BmiI GGNNCC 6 cut(s) 7, 110, 421, 422, 963, 1032
BmrFI CCNGG 5 cut(s) 9, 606, 701, 755, 966
BmsI GCATC 2 cut(s) 499, 798
BpiI GAAGAC 1 cut(s) 143
BpuMI CCSGG 2 cut(s) 9, 966
BsaJI CCNNGG 2 cut(s) 7, 886
Bsc4I CCNNNNNNNGG 3 cut(s) 69, 887, 888
Bse1I ACTGG 1 cut(s) 599
Bse3DI GCAATG 3 cut(s) 368, 538, 619
BseBI CCWGG 3 cut(s) 606, 701, 755
BseDI CCNNGG 2 cut(s) 7, 886
BseGI GGATG 5 cut(s) 25, 41, 356, 455, 1013
BseLI CCNNNNNNNGG 3 cut(s) 69, 887, 888
BseMI GCAATG 3 cut(s) 368, 538, 619
BseMII CTCAG 1 cut(s) 334
BseNI ACTGG 1 cut(s) 599
BseXI GCAGC 1 cut(s) 200
BshFI GGCC 3 cut(s) 6, 24, 604
BshNI GGYRCC 2 cut(s) 961, 1030
BsiHKAI GWGCWC 2 cut(s) 275, 708
BsiSI CCGG 2 cut(s) 9, 965
BslFI GGGAC 1 cut(s) 406
BslI CCNNNNNNNGG 3 cut(s) 69, 887, 888
BsmAI GTCTC 2 cut(s) 481, 661
BsmFI GGGAC 1 cut(s) 406
BsmI GAATGC 2 cut(s) 134, 1056
BsnI GGCC 3 cut(s) 6, 24, 604
Bsp1286I GDGCHC 3 cut(s) 275, 708, 813
Bsp143I GATC 3 cut(s) 584, 626, 947
BspANI GGCC 3 cut(s) 6, 24, 604
BspCNI CTCAG 1 cut(s) 335
BspLI GGNNCC 6 cut(s) 7, 110, 421, 422, 963, 1032
BspT107I GGYRCC 2 cut(s) 961, 1030
BsrDI GCAATG 3 cut(s) 368, 538, 619
BsrI ACTGG 1 cut(s) 599
BssECI CCNNGG 2 cut(s) 7, 886
BssMI GATC 3 cut(s) 584, 626, 947
BssT1I CCWWGG 1 cut(s) 886
Bst2UI CCWGG 3 cut(s) 606, 701, 755
Bst4CI ACNGT 1 cut(s) 305
BstAPI GCANNNNNTGC 1 cut(s) 979
BstC8I GCNNGC 1 cut(s) 971
BstDEI CTNAG 1 cut(s) 343
BstENI CCTNNNNNAGG 1 cut(s) 67
BstF5I GGATG 5 cut(s) 25, 41, 356, 455, 1013
BstKTI GATC 3 cut(s) 587, 629, 950
BstMAI GTCTC 2 cut(s) 481, 661
BstMBI GATC 3 cut(s) 584, 626, 947
BstMWI GCNNNNNNNGC 3 cut(s) 12, 21, 979
BstNI CCWGG 3 cut(s) 606, 701, 755
BstSCI CCNGG 5 cut(s) 7, 604, 699, 753, 964
BstSFI CTRYAG 1 cut(s) 637
BstV1I GCAGC 1 cut(s) 200
BstV2I GAAGAC 1 cut(s) 143
BsuI GTATCC 1 cut(s) 692
BsuRI GGCC 3 cut(s) 6, 24, 604
BtsCI GGATG 5 cut(s) 25, 41, 356, 455, 1013
BtsIMutI CAGTG 1 cut(s) 920
Cac8I GCNNGC 1 cut(s) 971
Cfr13I GGNCC 4 cut(s) 5, 79, 420, 835
Csp6I GTAC 4 cut(s) 118, 306, 842, 962
CviAII CATG 5 cut(s) 26, 113, 426, 832, 839
CviQI GTAC 4 cut(s) 118, 306, 842, 962
DdeI CTNAG 1 cut(s) 343
DpnI GATC 3 cut(s) 586, 628, 949
DpnII GATC 3 cut(s) 584, 626, 947
DriI GACNNNNNGTC 1 cut(s) 1000
EaeI YGGCCR 2 cut(s) 22, 602
Eam1105I GACNNNNNGTC 1 cut(s) 1000
Ecl136II GAGCTC 2 cut(s) 273, 706
Eco130I CCWWGG 1 cut(s) 886
Eco24I GRGCYC 3 cut(s) 275, 708, 813
Eco47I GGWCC 3 cut(s) 79, 420, 835
Eco53kI GAGCTC 2 cut(s) 273, 706
Eco57I CTGAAG 3 cut(s) 754, 787, 1066
EcoICRI GAGCTC 2 cut(s) 273, 706
EcoNI CCTNNNNNAGG 1 cut(s) 67
EcoO109I RGGNCCY 1 cut(s) 420
EcoRI GAATTC 1 cut(s) 338
EcoRII CCWGG 3 cut(s) 604, 699, 753
EcoT14I CCWWGG 1 cut(s) 886
EcoT38I GRGCYC 3 cut(s) 275, 708, 813
ErhI CCWWGG 1 cut(s) 886
FaeI CATG 5 cut(s) 29, 116, 429, 835, 842
FaqI GGGAC 1 cut(s) 406
FatI CATG 5 cut(s) 25, 112, 425, 831, 838
FbaI TGATCA 2 cut(s) 626, 947
FblI GTMKAC 1 cut(s) 690
Fnu4HI GCNGC 2 cut(s) 13, 214
FokI GGATG 5 cut(s) 28, 32, 363, 462, 1020
FriOI GRGCYC 3 cut(s) 275, 708, 813
Fsp4HI GCNGC 2 cut(s) 13, 214
FspBI CTAG 2 cut(s) 133, 243
GluI GCNGC 2 cut(s) 13, 214
HaeIII GGCC 3 cut(s) 6, 24, 604
HapII CCGG 2 cut(s) 9, 965
Hin1II CATG 5 cut(s) 29, 116, 429, 835, 842
HincII GTYRAC 2 cut(s) 166, 431
HindII GTYRAC 2 cut(s) 166, 431
HindIII AAGCTT 2 cut(s) 370, 922
HinfI GANTC 5 cut(s) 59, 549, 762, 853, 953
HpaI GTTAAC 2 cut(s) 166, 431
HpaII CCGG 2 cut(s) 9, 965
HphI GGTGA 2 cut(s) 903, 1004
Hpy166II GTNNAC 3 cut(s) 166, 431, 691
Hpy188I TCNGA 5 cut(s) 344, 495, 767, 848, 952
Hpy188III TCNNGA 3 cut(s) 381, 723, 1005
Hpy8I GTNNAC 3 cut(s) 166, 431, 691
HpyAV CCTTC 3 cut(s) 28, 242, 762
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4IV ACGT 1 cut(s) 693
HpyCH4V TGCA 6 cut(s) 15, 216, 591, 973, 982, 1054
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 21, 979
HpyF3I CTNAG 1 cut(s) 343
HpySE526I ACGT 1 cut(s) 693
Hsp92II CATG 5 cut(s) 29, 116, 429, 835, 842
KflI GGGWCCC 1 cut(s) 420
KpnI GGTACC 1 cut(s) 965
Ksp22I TGATCA 2 cut(s) 626, 947
KspAI GTTAAC 2 cut(s) 166, 431
Kzo9I GATC 3 cut(s) 584, 626, 947
LmnI GCTCC 4 cut(s) 270, 703, 828, 939
Lsp1109I GCAGC 1 cut(s) 200
LweI GCATC 2 cut(s) 499, 798
MaeI CTAG 2 cut(s) 133, 243
MaeII ACGT 1 cut(s) 693
MaeIII GTNAC 5 cut(s) 95, 464, 528, 992, 1023
MalI GATC 3 cut(s) 586, 628, 949
MboI GATC 3 cut(s) 584, 626, 947
MboII GAAGA 5 cut(s) 143, 186, 378, 508, 1059
MfeI CAATTG 2 cut(s) 74, 406
MhlI GDGCHC 3 cut(s) 275, 708, 813
MlsI TGGCCA 2 cut(s) 24, 604
MluCI AATT 6 cut(s) 74, 187, 338, 390, 406, 609
MluNI TGGCCA 2 cut(s) 24, 604
MlyI GAGTC 2 cut(s) 558, 947
MmeI TCCRAC 1 cut(s) 644
MnlI CCTC 5 cut(s) 129, 338, 736, 770, 887
Mox20I TGGCCA 2 cut(s) 24, 604
MroXI GAANNNNTTC 1 cut(s) 235
MscI TGGCCA 2 cut(s) 24, 604
MseI TTAA 7 cut(s) 165, 205, 330, 430, 658, 919, 1059
Msp20I TGGCCA 2 cut(s) 24, 604
MspI CCGG 2 cut(s) 9, 965
MspR9I CCNGG 5 cut(s) 9, 606, 701, 755, 966
MunI CAATTG 2 cut(s) 74, 406
Mva1269I GAATGC 2 cut(s) 134, 1056
MvaI CCWGG 3 cut(s) 606, 701, 755
MwoI GCNNNNNNNGC 3 cut(s) 12, 21, 979
NciI CCSGG 2 cut(s) 9, 966
NdeII GATC 3 cut(s) 584, 626, 947
NlaIII CATG 5 cut(s) 29, 116, 429, 835, 842
NlaIV GGNNCC 6 cut(s) 7, 110, 421, 422, 963, 1032
NmuCI GTSAC 3 cut(s) 528, 992, 1023
PctI GAATGC 2 cut(s) 134, 1056
PdmI GAANNNNTTC 1 cut(s) 235
PfeI GAWTC 3 cut(s) 59, 762, 853
PfoI TCCNGGA 1 cut(s) 699
PkrI GCNGC 2 cut(s) 14, 215
PleI GAGTC 2 cut(s) 557, 947
PpsI GAGTC 2 cut(s) 557, 947
PpuMI RGGWCCY 1 cut(s) 420
Psp124BI GAGCTC 2 cut(s) 275, 708
Psp5II RGGWCCY 1 cut(s) 420
Psp6I CCWGG 3 cut(s) 604, 699, 753
PspGI CCWGG 3 cut(s) 604, 699, 753
PspN4I GGNNCC 6 cut(s) 7, 110, 421, 422, 963, 1032
PspPI GGNCC 4 cut(s) 5, 79, 420, 835
PspPPI RGGWCCY 1 cut(s) 420
PsrI GAACNNNNNNTAC 2 cut(s) 101, 133
RsaI GTAC 4 cut(s) 119, 307, 843, 963
RsaNI GTAC 4 cut(s) 118, 306, 842, 962
SacI GAGCTC 2 cut(s) 275, 708
SaqAI TTAA 7 cut(s) 165, 205, 330, 430, 658, 919, 1059
SatI GCNGC 2 cut(s) 13, 214
Sau3AI GATC 3 cut(s) 584, 626, 947
Sau96I GGNCC 4 cut(s) 5, 79, 420, 835
SchI GAGTC 2 cut(s) 558, 947
ScrFI CCNGG 5 cut(s) 9, 606, 701, 755, 966
SduI GDGCHC 3 cut(s) 275, 708, 813
SfaNI GCATC 2 cut(s) 499, 798
SfcI CTRYAG 1 cut(s) 637
SinI GGWCC 3 cut(s) 79, 420, 835
Sse9I AATT 6 cut(s) 74, 187, 338, 390, 406, 609
SspI AATATT 1 cut(s) 712
SspMI CTAG 2 cut(s) 133, 243
SstI GAGCTC 2 cut(s) 275, 708
StyD4I CCNGG 5 cut(s) 7, 604, 699, 753, 964
StyI CCWWGG 1 cut(s) 886
TaaI ACNGT 1 cut(s) 305
TaiI ACGT 1 cut(s) 696
TaqI TCGA 3 cut(s) 126, 191, 552
TasI AATT 6 cut(s) 74, 187, 338, 390, 406, 609
TatI WGTACW 2 cut(s) 305, 841
TfiI GAWTC 3 cut(s) 59, 762, 853
Tru1I TTAA 7 cut(s) 165, 205, 330, 430, 658, 919, 1059
Tru9I TTAA 7 cut(s) 165, 205, 330, 430, 658, 919, 1059
TscAI CASTG 1 cut(s) 920
TseFI GTSAC 3 cut(s) 528, 992, 1023
TseI GCWGC 2 cut(s) 12, 213
Tsp45I GTSAC 3 cut(s) 528, 992, 1023
TspDTI ATGAA 7 cut(s) 30, 187, 223, 244, 334, 367, 379
TspGWI ACGGA 1 cut(s) 32
TspRI CASTG 1 cut(s) 920
VpaK11BI GGWCC 3 cut(s) 79, 420, 835
XagI CCTNNNNNAGG 1 cut(s) 67
XapI RAATTY 3 cut(s) 187, 338, 390
XmiI GTMKAC 1 cut(s) 690
XmnI GAANNNNTTC 1 cut(s) 235
XspI CTAG 2 cut(s) 133, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.