Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009848

Physical Location & Seq

Genomic Coordinates Forward (+)

8126463 .. 8128998

Gene Structure 2536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g14360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGCAGCAGCAGCATCAGCATCAGAACAACCCCAGCATCACTCATCTAGTCCCCTTGTCTGATTATGACGTTACTGAGCTAAAATTGGAAAACGGTCATTTGGCAATTCATGGGCTTGGTGGGATTGTTCCCACTGCTCCGGCAAAGCCCACTTGGAGCAATAGGGCTTGTGACACACTGGAATCAATAGTCCATCAAGCTACATGCCACAAACTACCTGAAACAAATTTAAGCTCAATGGTTGCATCCTCCGGTGGAACATGGACTGACGATTCCAGCCAGCAGCCGTGGGCAAACGGTTGGATCAGGAAACGTACCCGGTCGGACTCCGACTACCATGGGAAAAATGTTAGTAGTACTAGTACTACTAGCAATGTTCATGAAGAACAGACCGAGTACCAAATGGACAATGATACTACTCTAAACACATGGACTTCTTTTGAATCGGCTAAGACCAAAAGCAATGACGACGATTCCACTTGTCATGAGGGGTTGGAAAACCAAGATGTGGAACGAGAGACCACAAAAGGGCATGAATCAAGCCGCTCAAGATCACGACCACGGCGAGTTGCTGCCATTCATAATCAGTCAGAGAGGAAACGAAGAGATCGGATCAATCAGAAAATGAAAGCTCTACAGAGGTTGGTACCAAATGCCAATAAGACTGATAAAGCTTCAATGCTTGACGAGGTGATAAGATACTTGGAGTTACTCCAAGCACAAGTTCAAATGATGAATAGCATGAGAAATGGTATGCAGCCCCATATGAATATGATGATGCCTTTAGGAATGCAGCAGCAGCAGCAACAGCAGCATCAAATGTCAATCCTAGCGCGCATGGGAATGACTCCGGTTGTTCCTGGCGCGCTAGGAATGGGAATGGGAATGGGAATGCTCAATGTAAGCAACATGGCAAGAATGGCTCCTCATCAATCTCTACAGCAGCAGCTCATTCATCCTACTCCTGCATCATTTCTTCCACCCTTTATGGTGCCCCAACTGATGCCACCAAAGCCTGATCCTGCCACAAATGCTAATTCAGACTCTTTTGCTAATCCATATTGTACCTTCCTAGCACAACAGCAATCAATGAATATCGACCTGTTCAACAAGATGGCAGCAGTGTTCCGTCAACAAGTCAATCATCAATCGGCAGCAAGCAGCCCATCACAGTCGAAACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003700 GO:0005575 GO:0005911 GO:0006355 GO:0008150 GO:0009506 GO:0009566 GO:0009567 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0030054 GO:0031323 GO:0031326 GO:0044703 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

395

Amino Acids

44.18

Weight (kDa)

7.83

Isoelectric Point (pI)

63.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	194 - 239	1.6e-11	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	197 - 244	5e-08	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61270 AT5G61270 AT5G61270
fragaria_vesca	FvH4_5g14360
malus_domestica	MD06G1199400.v1.1 MD14G1208000.v1.1
prunus_persica	Prupe.5G200100_v2.0.a1
pyrus_communis	pycom06g17620 pycom14g17170
rosa_chinensis	RchiOBHm_Chr7g0182341
rosa_laevigata	RLG00000005129
rosa_multiflora	Rmu_sc0002070.1_g000014
rosa_roxburghii	Rroxscaffold_3G00271290
rosa_rugosa	Rorug06G0447100
rosa_samantha	Rh7AG050200 Rh7AG050400 Rh7BG050200 Rh7CG051500 Rh7CG051700 Rh7DG049400
rosa_wichuraiana	Rw7G004110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	646
AccB1I	GGYRCC	2 cut(s)	646, 991
AccB7I	CCANNNNNTGG	1 cut(s)	508
AccBSI	CCGCTC	1 cut(s)	546
AccII	CGCG	2 cut(s)	835, 866
AciI	CCGC	1 cut(s)	544
AclWI	GGATC	3 cut(s)	311, 620, 1013
AcsI	RAATTY	1 cut(s)	226
AfaI	GTAC	6 cut(s)	316, 358, 364, 398, 648, 1066
AfiI	CCNNNNNNNGG	2 cut(s)	508, 528
AgsI	TTSAA	4 cut(s)	443, 678, 728, 1108
AhlI	ACTAGT	1 cut(s)	359
AjnI	CCWGG	1 cut(s)	859
AjuI	GAANNNNNNNTTGG	2 cut(s)	708, 740
AluBI	AGCT	6 cut(s)	79, 200, 234, 632, 674, 949
AluI	AGCT	6 cut(s)	79, 200, 234, 632, 674, 949
Alw26I	GTCTC	1 cut(s)	512
AlwI	GGATC	3 cut(s)	311, 620, 1013
ApoI	RAATTY	1 cut(s)	226
Asp718I	GGTACC	1 cut(s)	646
AspLEI	GCGC	4 cut(s)	835, 837, 866, 868
AsuC2I	CCSGG	1 cut(s)	319
AsuHPI	GGTGA	1 cut(s)	703
BaeGI	GKGCMC	1 cut(s)	996
BanI	GGYRCC	2 cut(s)	646, 991
BccI	CCATC	3 cut(s)	201, 1108, 1174
BceAI	ACGGC	2 cut(s)	271, 578
BciT130I	CCWGG	1 cut(s)	861
BcnI	CCSGG	1 cut(s)	319
BcoDI	GTCTC	1 cut(s)	512
BcuI	ACTAGT	1 cut(s)	359
BfaI	CTAG	6 cut(s)	47, 360, 369, 830, 869, 1073
BfmI	CTRYAG	2 cut(s)	635, 938
BmcAI	AGTACT	2 cut(s)	358, 364
Bme1390I	CCNGG	2 cut(s)	319, 861
BmiI	GGNNCC	3 cut(s)	648, 924, 993
BmrFI	CCNGG	2 cut(s)	319, 861
BmsI	GCATC	8 cut(s)	22, 28, 45, 254, 768, 823, 977, 993
BpuEI	CTTGAG	1 cut(s)	532
BpuMI	CCSGG	1 cut(s)	319
BsaI	GGTCTC	1 cut(s)	512
BsaJI	CCNNGG	3 cut(s)	287, 337, 560
BsaWI	WCCGGW	2 cut(s)	251, 850
Bsc4I	CCNNNNNNNGG	2 cut(s)	508, 528
Bse1I	ACTGG	1 cut(s)	183
Bse3DI	GCAATG	2 cut(s)	379, 469
BseBI	CCWGG	1 cut(s)	861
BseDI	CCNNGG	3 cut(s)	287, 337, 560
BseGI	GGATG	2 cut(s)	245, 955
BseLI	CCNNNNNNNGG	2 cut(s)	508, 528
BseMI	GCAATG	2 cut(s)	379, 469
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	183
BsePI	GCGCGC	2 cut(s)	833, 864
BseRI	GAGGAG	1 cut(s)	915
BseSI	GKGCMC	1 cut(s)	996
BseYI	CCCAGC	1 cut(s)	32
Bsh1236I	CGCG	2 cut(s)	835, 866
Bsh1285I	CGRYCG	1 cut(s)	323
BshNI	GGYRCC	2 cut(s)	646, 991
BsiEI	CGRYCG	1 cut(s)	323
BsiSI	CCGG	4 cut(s)	140, 252, 319, 851
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	2 cut(s)	508, 528
BsmAI	GTCTC	1 cut(s)	512
BsmFI	GGGAC	1 cut(s)	35
BsmI	GAATGC	2 cut(s)	795, 897
Bso31I	GGTCTC	1 cut(s)	512
Bsp1286I	GDGCHC	1 cut(s)	996
Bsp143I	GATC	5 cut(s)	303, 551, 607, 612, 1018
Bsp19I	CCATGG	1 cut(s)	337
BspACI	CCGC	1 cut(s)	544
BspCNI	CTCAG	1 cut(s)	67
BspFNI	CGCG	2 cut(s)	835, 866
BspHI	TCATGA	2 cut(s)	379, 484
BspLI	GGNNCC	3 cut(s)	648, 924, 993
BspPI	GGATC	3 cut(s)	311, 620, 1013
BspT107I	GGYRCC	2 cut(s)	646, 991
BspTNI	GGTCTC	1 cut(s)	512
BsrBI	CCGCTC	1 cut(s)	546
BsrDI	GCAATG	2 cut(s)	379, 469
BsrI	ACTGG	1 cut(s)	183
BssECI	CCNNGG	3 cut(s)	287, 337, 560
BssHII	GCGCGC	2 cut(s)	833, 864
BssMI	GATC	5 cut(s)	303, 551, 607, 612, 1018
BssT1I	CCWWGG	1 cut(s)	337
Bst2UI	CCWGG	1 cut(s)	861
Bst4CI	ACNGT	3 cut(s)	95, 299, 1173
Bst6I	CTCTTC	1 cut(s)	598
BstC8I	GCNNGC	4 cut(s)	281, 835, 866, 1159
BstDEI	CTNAG	2 cut(s)	75, 450
BstDSI	CCRYGG	3 cut(s)	287, 337, 560
BstF5I	GGATG	2 cut(s)	245, 955
BstFNI	CGCG	2 cut(s)	835, 866
BstHHI	GCGC	4 cut(s)	835, 837, 866, 868
BstKTI	GATC	5 cut(s)	306, 554, 610, 615, 1021
BstMAI	GTCTC	1 cut(s)	512
BstMBI	GATC	5 cut(s)	303, 551, 607, 612, 1018
BstMCI	CGRYCG	1 cut(s)	323
BstMWI	GCNNNNNNNGC	9 cut(s)	10, 16, 799, 802, 808, 811, 920, 1012, 1031
BstNI	CCWGG	1 cut(s)	861
BstNSI	RCATGY	1 cut(s)	207
BstSCI	CCNGG	2 cut(s)	317, 859
BstSFI	CTRYAG	2 cut(s)	635, 938
BstSLI	GKGCMC	1 cut(s)	996
BstUI	CGCG	2 cut(s)	835, 866
BtgI	CCRYGG	3 cut(s)	287, 337, 560
BtsCI	GGATG	2 cut(s)	245, 955
BtsI	GCAGTG	2 cut(s)	132, 1128
BtsIMutI	CAGTG	3 cut(s)	132, 176, 1128
Cac8I	GCNNGC	4 cut(s)	281, 835, 866, 1159
CciI	TCATGA	2 cut(s)	379, 484
CfoI	GCGC	4 cut(s)	835, 837, 866, 868
Csp6I	GTAC	6 cut(s)	315, 357, 363, 397, 647, 1065
CviQI	GTAC	6 cut(s)	315, 357, 363, 397, 647, 1065
DdeI	CTNAG	2 cut(s)	75, 450
DpnI	GATC	5 cut(s)	305, 553, 609, 614, 1020
DpnII	GATC	5 cut(s)	303, 551, 607, 612, 1018
Eam1104I	CTCTTC	1 cut(s)	598
EarI	CTCTTC	1 cut(s)	598
Eco130I	CCWWGG	1 cut(s)	337
Eco31I	GGTCTC	1 cut(s)	512
EcoRII	CCWGG	1 cut(s)	859
EcoT14I	CCWWGG	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	337
FaqI	GGGAC	1 cut(s)	35
FauNDI	CATATG	1 cut(s)	765
FokI	GGATG	2 cut(s)	232, 942
FspBI	CTAG	6 cut(s)	47, 360, 369, 830, 869, 1073
GlaI	GCGC	4 cut(s)	834, 836, 865, 867
GsaI	CCCAGC	1 cut(s)	36
HapII	CCGG	4 cut(s)	140, 252, 319, 851
HhaI	GCGC	4 cut(s)	835, 837, 866, 868
Hin6I	GCGC	4 cut(s)	833, 835, 864, 866
HinP1I	GCGC	4 cut(s)	833, 835, 864, 866
HincII	GTYRAC	1 cut(s)	1133
HindII	GTYRAC	1 cut(s)	1133
HindIII	AAGCTT	1 cut(s)	672
HinfI	GANTC	8 cut(s)	182, 272, 326, 443, 473, 536, 847, 1043
HpaII	CCGG	4 cut(s)	140, 252, 319, 851
HphI	GGTGA	1 cut(s)	703
Hpy166II	GTNNAC	1 cut(s)	1133
Hpy188I	TCNGA	8 cut(s)	24, 61, 325, 331, 592, 612, 621, 1042
Hpy188III	TCNNGA	5 cut(s)	307, 380, 485, 549, 555
Hpy8I	GTNNAC	1 cut(s)	1133
Hpy99I	CGWCG	1 cut(s)	473
HpyAV	CCTTC	1 cut(s)	1078
HpyCH4III	ACNGT	3 cut(s)	95, 299, 1173
HpyCH4IV	ACGT	2 cut(s)	69, 313
HpyCH4V	TGCA	5 cut(s)	4, 245, 757, 793, 968
HpyF10VI	GCNNNNNNNGC	9 cut(s)	10, 16, 799, 802, 808, 811, 920, 1012, 1031
HpyF3I	CTNAG	2 cut(s)	75, 450
HpySE526I	ACGT	2 cut(s)	69, 313
HspAI	GCGC	4 cut(s)	833, 835, 864, 866
KpnI	GGTACC	1 cut(s)	650
Kzo9I	GATC	5 cut(s)	303, 551, 607, 612, 1018
LmnI	GCTCC	3 cut(s)	142, 156, 928
LweI	GCATC	8 cut(s)	22, 28, 45, 254, 768, 823, 977, 993
MaeI	CTAG	6 cut(s)	47, 360, 369, 830, 869, 1073
MaeII	ACGT	2 cut(s)	69, 313
MaeIII	GTNAC	3 cut(s)	70, 170, 708
MalI	GATC	5 cut(s)	305, 553, 609, 614, 1020
MbiI	CCGCTC	1 cut(s)	546
MboI	GATC	5 cut(s)	303, 551, 607, 612, 1018
MboII	GAAGA	3 cut(s)	395, 615, 968
MhlI	GDGCHC	1 cut(s)	996
MluCI	AATT	4 cut(s)	83, 105, 226, 1036
MlyI	GAGTC	3 cut(s)	320, 841, 1037
MmeI	TCCRAC	4 cut(s)	281, 303, 354, 474
MnlI	CCTC	6 cut(s)	259, 481, 588, 633, 682, 936
MseI	TTAA	2 cut(s)	230, 1183
MslI	CAYNNNNRTG	1 cut(s)	842
MspI	CCGG	4 cut(s)	140, 252, 319, 851
MspR9I	CCNGG	2 cut(s)	319, 861
Mva1269I	GAATGC	2 cut(s)	795, 897
MvaI	CCWGG	1 cut(s)	861
MvnI	CGCG	2 cut(s)	835, 866
MwoI	GCNNNNNNNGC	9 cut(s)	10, 16, 799, 802, 808, 811, 920, 1012, 1031
NciI	CCSGG	1 cut(s)	319
NcoI	CCATGG	1 cut(s)	337
NdeI	CATATG	1 cut(s)	765
NdeII	GATC	5 cut(s)	303, 551, 607, 612, 1018
NlaIV	GGNNCC	3 cut(s)	648, 924, 993
NmuCI	GTSAC	1 cut(s)	170
NspI	RCATGY	1 cut(s)	207
PagI	TCATGA	2 cut(s)	379, 484
PauI	GCGCGC	2 cut(s)	833, 864
PcsI	WCGNNNNNNNCGW	1 cut(s)	562
PctI	GAATGC	2 cut(s)	795, 897
PfeI	GAWTC	5 cut(s)	182, 272, 443, 473, 536
PflMI	CCANNNNNTGG	1 cut(s)	508
PleI	GAGTC	3 cut(s)	320, 841, 1037
PpsI	GAGTC	3 cut(s)	320, 841, 1037
Psp6I	CCWGG	1 cut(s)	859
PspFI	CCCAGC	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	859
PspN4I	GGNNCC	3 cut(s)	648, 924, 993
PteI	GCGCGC	2 cut(s)	833, 864
RsaI	GTAC	6 cut(s)	316, 358, 364, 398, 648, 1066
RsaNI	GTAC	6 cut(s)	315, 357, 363, 397, 647, 1065
RseI	CAYNNNNRTG	1 cut(s)	842
SaqAI	TTAA	2 cut(s)	230, 1183
Sau3AI	GATC	5 cut(s)	303, 551, 607, 612, 1018
ScaI	AGTACT	2 cut(s)	358, 364
SchI	GAGTC	3 cut(s)	320, 841, 1037
ScrFI	CCNGG	2 cut(s)	319, 861
SduI	GDGCHC	1 cut(s)	996
SfaNI	GCATC	8 cut(s)	22, 28, 45, 254, 768, 823, 977, 993
SfcI	CTRYAG	2 cut(s)	635, 938
SmiMI	CAYNNNNRTG	1 cut(s)	842
SmlI	CTYRAG	1 cut(s)	547
SmoI	CTYRAG	1 cut(s)	547
SpeI	ACTAGT	1 cut(s)	359
Sse9I	AATT	4 cut(s)	83, 105, 226, 1036
SsiI	CCGC	1 cut(s)	544
SspMI	CTAG	6 cut(s)	47, 360, 369, 830, 869, 1073
StyD4I	CCNGG	2 cut(s)	317, 859
StyI	CCWWGG	1 cut(s)	337
TaaI	ACNGT	3 cut(s)	95, 299, 1173
TaiI	ACGT	2 cut(s)	72, 316
TaqI	TCGA	2 cut(s)	1098, 1175
TaqII	GACCGA	1 cut(s)	407
TasI	AATT	4 cut(s)	83, 105, 226, 1036
TatI	WGTACW	2 cut(s)	356, 362
TauI	GCSGC	1 cut(s)	546
TfiI	GAWTC	5 cut(s)	182, 272, 443, 473, 536
Tru1I	TTAA	2 cut(s)	230, 1183
Tru9I	TTAA	2 cut(s)	230, 1183
TscAI	CASTG	3 cut(s)	139, 183, 1128
TseFI	GTSAC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	170
TspGWI	ACGGA	1 cut(s)	1118
TspRI	CASTG	3 cut(s)	139, 183, 1128
Van91I	CCANNNNNTGG	1 cut(s)	508
XapI	RAATTY	1 cut(s)	226
XceI	RCATGY	1 cut(s)	207
XspI	CTAG	6 cut(s)	47, 360, 369, 830, 869, 1073
ZrmI	AGTACT	2 cut(s)	358, 364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.