Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0009848

Physical Location & Seq

Genomic Coordinates Forward (+)

65237166 .. 65239918

Gene Structure 2753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005129

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGCAGCAGCAGCAGCAGCATCAGAACAACTCCAACATCACTCATCTAGTCCCCATATCTAGCTATGACGTTGCTGAGCTAAAGTTGGAAAATGGTCATTTGGCAATTCATGGGCTTGGTGGGATTGTTCCCACTGCTCTGGAAAAGCCCACCTGGAGCAATAGGGCTTGTGACACACTGGAATCAATAGTCCATCAAGCTACATGCCACAAAGTACCTAAAACAAATTTAAGCTCAATGGTTGCATCCTCCTGTGGAACATGGACTGAAGATTCCGGCCAGCAGCCGTTGGCAAACAGTTGGATCAGGAACTGTACCCGATCGGATTCCGACTATCATGGAAAGAATGTTAGTAGTACTAGTACTACTAGCAATGTTCATGAAGAACAGACCGAGTACCAGAGGGACAATGATACAACTCTAAACACATGGGTTTCTTTTGAATCGGCTAGGAGCAAAAGCAATGACGACGATTCCACTTGTCAGGAGGGATTGGAAAACCAAGACAAAGGACGAAAGACCGCAAAGGGCAATGAATCAAGCCGTTCACGATCACGATCACGATCACGATCACGGCGAGTTGCTGCCATCCATAATCAGTCAGAGAGGAAACGAAGAGATCGGATCAATCAGAAAATGAAAGCTCTACAGAGGTTGGTGCCAAATGCTGATAAGACTGACAAAGCTTCAATGCTCGACGAGGTGATAAAATACTTGGAACAACTTCAAGCACAAGTTCAAATGATGAATAGCATGAGGATTAATATGCATCCCCATATGAATATGATGATGCCATTAGGAATGCAGCAGCAGCAACATCTTCATCAAATGTCAGTCCTAGCGCGCATGGGAATGACTCCTGTTGTTCCTGGCCCGCTAGGAATGGGAATGCTCGACGTAAGCAACATGGCAAGAATTGCTCCTCATCAATCTCTACAGCAGCCGCTCATTCATCCTACTCCTGCATCATTTCTTCCACCCTTTATGGTGCCCCAACTGATTCCGCCAAAGCCTGACCCTGCCACTAGTGCTAATTCAGACTCTTTTGCTGATCCATATCGTGCCCTCCTAGCACAACAGCAATCAATGAATATGGACCTGTTCAACAGGATGGCAGCACTGTACCGACAACAAGTCAATCATCAGACGGCAGCACGCAGCCCATCACAGTCGAACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003700 GO:0005575 GO:0005911 GO:0006355 GO:0008150 GO:0009506 GO:0009566 GO:0009567 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0030054 GO:0031323 GO:0031326 GO:0044703 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

394

Amino Acids

44.09

Weight (kDa)

9.07

Isoelectric Point (pI)

62.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	198 - 243	1.9e-12	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	201 - 251	1.1e-07	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61270 AT5G61270 AT5G61270
fragaria_vesca	FvH4_5g14360
malus_domestica	MD06G1199400.v1.1 MD14G1208000.v1.1
prunus_persica	Prupe.5G200100_v2.0.a1
pyrus_communis	pycom06g17620 pycom14g17170
rosa_chinensis	RchiOBHm_Chr7g0182341
rosa_laevigata	RLG00000005129
rosa_multiflora	Rmu_sc0002070.1_g000014
rosa_roxburghii	Rroxscaffold_3G00271290
rosa_rugosa	Rorug06G0447100
rosa_samantha	Rh7AG050200 Rh7AG050400 Rh7BG050200 Rh7CG051500 Rh7CG051700 Rh7DG049400
rosa_wichuraiana	Rw7G004110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	658, 988
AccBSI	CCGCTC	1 cut(s)	946
AccII	CGCG	1 cut(s)	844
AciI	CCGC	4 cut(s)	522, 875, 944, 1004
AclWI	GGATC	3 cut(s)	311, 632, 1046
AcoI	YGGCCR	1 cut(s)	277
AcsI	RAATTY	1 cut(s)	226
AcuI	CTGAAG	1 cut(s)	288
AfaI	GTAC	6 cut(s)	216, 316, 358, 364, 398, 1124
AgsI	TTSAA	5 cut(s)	443, 690, 728, 740, 1105
AhdI	GACNNNNNGTC	1 cut(s)	1133
AhlI	ACTAGT	2 cut(s)	359, 1025
AjnI	CCWGG	2 cut(s)	152, 868
AluBI	AGCT	6 cut(s)	63, 79, 200, 234, 644, 686
AluI	AGCT	6 cut(s)	63, 79, 200, 234, 644, 686
AlwI	GGATC	3 cut(s)	311, 632, 1046
AlwNI	CAGNNNCTG	1 cut(s)	312
AoxI	GGCC	2 cut(s)	277, 871
ApoI	RAATTY	1 cut(s)	226
AseI	ATTAAT	1 cut(s)	762
Asp700I	GAANNNNTTC	1 cut(s)	723
AspLEI	GCGC	2 cut(s)	844, 846
AspS9I	GGNCC	2 cut(s)	872, 1096
AsuHPI	GGTGA	1 cut(s)	715
AvaII	GGWCC	1 cut(s)	1096
BaeGI	GKGCMC	2 cut(s)	993, 1066
BanI	GGYRCC	2 cut(s)	658, 988
BccI	CCATC	4 cut(s)	201, 596, 1105, 1171
BceAI	ACGGC	4 cut(s)	271, 528, 590, 1164
BciT130I	CCWGG	2 cut(s)	154, 870
BcuI	ACTAGT	2 cut(s)	359, 1025
BfaI	CTAG	9 cut(s)	47, 60, 360, 369, 450, 839, 878, 1026, 1070
BfmI	CTRYAG	2 cut(s)	647, 935
BlpI	GCTNAGC	1 cut(s)	75
BmcAI	AGTACT	2 cut(s)	358, 364
Bme1390I	CCNGG	2 cut(s)	154, 870
Bme18I	GGWCC	1 cut(s)	1096
BmeRI	GACNNNNNGTC	1 cut(s)	1133
BmgT120I	GGNCC	2 cut(s)	872, 1096
BmiI	GGNNCC	2 cut(s)	660, 990
BmrFI	CCNGG	2 cut(s)	154, 870
BmsI	GCATC	5 cut(s)	28, 254, 778, 780, 974
BpmI	CTGGAG	1 cut(s)	175
Bpu1102I	GCTNAGC	1 cut(s)	75
BsaBI	GATNNNNATC	4 cut(s)	556, 562, 568, 1056
Bse1I	ACTGG	1 cut(s)	183
Bse3DI	GCAATG	3 cut(s)	379, 469, 538
Bse8I	GATNNNNATC	4 cut(s)	556, 562, 568, 1056
BseBI	CCWGG	2 cut(s)	154, 870
BseGI	GGATG	5 cut(s)	245, 588, 769, 952, 1116
BseJI	GATNNNNATC	4 cut(s)	556, 562, 568, 1056
BseMI	GCAATG	3 cut(s)	379, 469, 538
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	183
BsePI	GCGCGC	1 cut(s)	842
BseRI	GAGGAG	1 cut(s)	912
BseSI	GKGCMC	2 cut(s)	993, 1066
Bsh1236I	CGCG	1 cut(s)	844
Bsh1285I	CGRYCG	1 cut(s)	323
BshFI	GGCC	2 cut(s)	279, 873
BshNI	GGYRCC	2 cut(s)	658, 988
BsiEI	CGRYCG	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	276
BslFI	GGGAC	2 cut(s)	35, 419
BsmFI	GGGAC	2 cut(s)	35, 419
BsmI	GAATGC	2 cut(s)	807, 894
BsnI	GGCC	2 cut(s)	279, 873
Bsp1286I	GDGCHC	2 cut(s)	993, 1066
Bsp143I	GATC	9 cut(s)	303, 320, 551, 557, 563, 569, 619, 624, 1051
Bsp1720I	GCTNAGC	1 cut(s)	75
BspACI	CCGC	4 cut(s)	522, 875, 944, 1004
BspANI	GGCC	2 cut(s)	279, 873
BspCNI	CTCAG	1 cut(s)	67
BspFNI	CGCG	1 cut(s)	844
BspHI	TCATGA	1 cut(s)	379
BspLI	GGNNCC	2 cut(s)	660, 990
BspPI	GGATC	3 cut(s)	311, 632, 1046
BspT107I	GGYRCC	2 cut(s)	658, 988
BsrBI	CCGCTC	1 cut(s)	946
BsrDI	GCAATG	3 cut(s)	379, 469, 538
BsrI	ACTGG	1 cut(s)	183
BssHII	GCGCGC	1 cut(s)	842
BssMI	GATC	9 cut(s)	303, 320, 551, 557, 563, 569, 619, 624, 1051
Bst2UI	CCWGG	2 cut(s)	154, 870
Bst4CI	ACNGT	4 cut(s)	299, 314, 1122, 1170
Bst6I	CTCTTC	1 cut(s)	610
BstAPI	GCANNNNNTGC	1 cut(s)	917
BstC8I	GCNNGC	4 cut(s)	281, 844, 875, 1156
BstDEI	CTNAG	1 cut(s)	75
BstF5I	GGATG	5 cut(s)	245, 588, 769, 952, 1116
BstFNI	CGCG	1 cut(s)	844
BstHHI	GCGC	2 cut(s)	844, 846
BstKTI	GATC	9 cut(s)	306, 323, 554, 560, 566, 572, 622, 627, 1054
BstMBI	GATC	9 cut(s)	303, 320, 551, 557, 563, 569, 619, 624, 1051
BstMCI	CGRYCG	1 cut(s)	323
BstMWI	GCNNNNNNNGC	7 cut(s)	10, 13, 16, 811, 917, 1028, 1070
BstNI	CCWGG	2 cut(s)	154, 870
BstNSI	RCATGY	1 cut(s)	207
BstSCI	CCNGG	2 cut(s)	152, 868
BstSFI	CTRYAG	2 cut(s)	647, 935
BstSLI	GKGCMC	2 cut(s)	993, 1066
BstUI	CGCG	1 cut(s)	844
BstXI	CCANNNNNNTGG	1 cut(s)	139
BsuRI	GGCC	2 cut(s)	279, 873
BtsCI	GGATG	5 cut(s)	245, 588, 769, 952, 1116
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	3 cut(s)	132, 176, 1118
Cac8I	GCNNGC	4 cut(s)	281, 844, 875, 1156
CaiI	CAGNNNCTG	1 cut(s)	312
CciI	TCATGA	1 cut(s)	379
CfoI	GCGC	2 cut(s)	844, 846
Cfr13I	GGNCC	2 cut(s)	872, 1096
Csp6I	GTAC	6 cut(s)	215, 315, 357, 363, 397, 1123
CviAII	CATG	9 cut(s)	110, 204, 261, 338, 380, 429, 754, 847, 907
CviQI	GTAC	6 cut(s)	215, 315, 357, 363, 397, 1123
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	9 cut(s)	305, 322, 553, 559, 565, 571, 621, 626, 1053
DpnII	GATC	9 cut(s)	303, 320, 551, 557, 563, 569, 619, 624, 1051
DriI	GACNNNNNGTC	1 cut(s)	1133
EaeI	YGGCCR	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	610
Eam1105I	GACNNNNNGTC	1 cut(s)	1133
EarI	CTCTTC	1 cut(s)	610
EciI	GGCGGA	1 cut(s)	993
Eco47I	GGWCC	1 cut(s)	1096
Eco57I	CTGAAG	1 cut(s)	288
EcoRII	CCWGG	2 cut(s)	152, 868
EcoT22I	ATGCAT	1 cut(s)	771
FaeI	CATG	9 cut(s)	113, 207, 264, 341, 383, 432, 757, 850, 910
FaqI	GGGAC	2 cut(s)	35, 419
FatI	CATG	9 cut(s)	109, 203, 260, 337, 379, 428, 753, 846, 906
FauI	CCCGC	1 cut(s)	882
FauNDI	CATATG	1 cut(s)	777
FokI	GGATG	5 cut(s)	232, 575, 756, 939, 1123
FspBI	CTAG	9 cut(s)	47, 60, 360, 369, 450, 839, 878, 1026, 1070
GlaI	GCGC	2 cut(s)	843, 845
GsuI	CTGGAG	1 cut(s)	175
HaeIII	GGCC	2 cut(s)	279, 873
HapII	CCGG	1 cut(s)	276
HhaI	GCGC	2 cut(s)	844, 846
Hin1II	CATG	9 cut(s)	113, 207, 264, 341, 383, 432, 757, 850, 910
Hin6I	GCGC	2 cut(s)	842, 844
HinP1I	GCGC	2 cut(s)	842, 844
HindIII	AAGCTT	1 cut(s)	684
HinfI	GANTC	9 cut(s)	182, 272, 326, 443, 473, 536, 856, 1000, 1040
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	1 cut(s)	715
Hpy166II	GTNNAC	1 cut(s)	548
Hpy188I	TCNGA	8 cut(s)	24, 325, 331, 604, 624, 633, 1039, 1146
Hpy188III	TCNNGA	8 cut(s)	140, 307, 380, 485, 549, 555, 561, 567
Hpy8I	GTNNAC	1 cut(s)	548
Hpy99I	CGWCG	3 cut(s)	473, 701, 899
HpyCH4III	ACNGT	4 cut(s)	299, 314, 1122, 1170
HpyCH4IV	ACGT	2 cut(s)	69, 897
HpyCH4V	TGCA	5 cut(s)	4, 245, 769, 805, 965
HpyF10VI	GCNNNNNNNGC	7 cut(s)	10, 13, 16, 811, 917, 1028, 1070
HpyF3I	CTNAG	1 cut(s)	75
HpySE526I	ACGT	2 cut(s)	69, 897
Hsp92II	CATG	9 cut(s)	113, 207, 264, 341, 383, 432, 757, 850, 910
HspAI	GCGC	2 cut(s)	842, 844
Kzo9I	GATC	9 cut(s)	303, 320, 551, 557, 563, 569, 619, 624, 1051
LmnI	GCTCC	3 cut(s)	156, 453, 925
LweI	GCATC	5 cut(s)	28, 254, 778, 780, 974
MaeI	CTAG	9 cut(s)	47, 60, 360, 369, 450, 839, 878, 1026, 1070
MaeII	ACGT	2 cut(s)	69, 897
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	9 cut(s)	305, 322, 553, 559, 565, 571, 621, 626, 1053
MbiI	CCGCTC	1 cut(s)	946
MboI	GATC	9 cut(s)	303, 320, 551, 557, 563, 569, 619, 624, 1051
MboII	GAAGA	5 cut(s)	281, 395, 627, 812, 965
MhlI	GDGCHC	2 cut(s)	993, 1066
MluCI	AATT	5 cut(s)	105, 226, 915, 1033, 1177
MlyI	GAGTC	2 cut(s)	850, 1034
MmeI	TCCRAC	4 cut(s)	57, 66, 281, 354
MnlI	CCTC	9 cut(s)	259, 396, 481, 600, 645, 694, 750, 933, 1076
Mph1103I	ATGCAT	1 cut(s)	771
MroXI	GAANNNNTTC	1 cut(s)	723
MseI	TTAA	3 cut(s)	230, 762, 1180
MslI	CAYNNNNRTG	1 cut(s)	851
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	2 cut(s)	154, 870
Mva1269I	GAATGC	2 cut(s)	807, 894
MvaI	CCWGG	2 cut(s)	154, 870
MvnI	CGCG	1 cut(s)	844
MwoI	GCNNNNNNNGC	7 cut(s)	10, 13, 16, 811, 917, 1028, 1070
NdeI	CATATG	1 cut(s)	777
NdeII	GATC	9 cut(s)	303, 320, 551, 557, 563, 569, 619, 624, 1051
NlaIII	CATG	9 cut(s)	113, 207, 264, 341, 383, 432, 757, 850, 910
NlaIV	GGNNCC	2 cut(s)	660, 990
NmuCI	GTSAC	1 cut(s)	170
NsiI	ATGCAT	1 cut(s)	771
NspI	RCATGY	1 cut(s)	207
PagI	TCATGA	1 cut(s)	379
PauI	GCGCGC	1 cut(s)	842
PcsI	WCGNNNNNNNCGW	1 cut(s)	574
PctI	GAATGC	2 cut(s)	807, 894
PdmI	GAANNNNTTC	1 cut(s)	723
PfeI	GAWTC	7 cut(s)	182, 272, 326, 443, 473, 536, 1000
Ple19I	CGATCG	1 cut(s)	323
PleI	GAGTC	2 cut(s)	850, 1034
PpsI	GAGTC	2 cut(s)	850, 1034
PshBI	ATTAAT	1 cut(s)	762
Psp6I	CCWGG	2 cut(s)	152, 868
PspGI	CCWGG	2 cut(s)	152, 868
PspN4I	GGNNCC	2 cut(s)	660, 990
PspPI	GGNCC	2 cut(s)	872, 1096
PstNI	CAGNNNCTG	1 cut(s)	312
PteI	GCGCGC	1 cut(s)	842
PvuI	CGATCG	1 cut(s)	323
RsaI	GTAC	6 cut(s)	216, 316, 358, 364, 398, 1124
RsaNI	GTAC	6 cut(s)	215, 315, 357, 363, 397, 1123
RseI	CAYNNNNRTG	1 cut(s)	851
SaqAI	TTAA	3 cut(s)	230, 762, 1180
Sau3AI	GATC	9 cut(s)	303, 320, 551, 557, 563, 569, 619, 624, 1051
Sau96I	GGNCC	2 cut(s)	872, 1096
ScaI	AGTACT	2 cut(s)	358, 364
SchI	GAGTC	2 cut(s)	850, 1034
ScrFI	CCNGG	2 cut(s)	154, 870
SduI	GDGCHC	2 cut(s)	993, 1066
SfaNI	GCATC	5 cut(s)	28, 254, 778, 780, 974
SfcI	CTRYAG	2 cut(s)	647, 935
SinI	GGWCC	1 cut(s)	1096
SmiMI	CAYNNNNRTG	1 cut(s)	851
SpeI	ACTAGT	2 cut(s)	359, 1025
Sse9I	AATT	5 cut(s)	105, 226, 915, 1033, 1177
SsiI	CCGC	4 cut(s)	522, 875, 944, 1004
SspMI	CTAG	9 cut(s)	47, 60, 360, 369, 450, 839, 878, 1026, 1070
StyD4I	CCNGG	2 cut(s)	152, 868
TaaI	ACNGT	4 cut(s)	299, 314, 1122, 1170
TaiI	ACGT	2 cut(s)	72, 900
TaqI	TCGA	3 cut(s)	696, 894, 1172
TaqII	GACCGA	1 cut(s)	407
TasI	AATT	5 cut(s)	105, 226, 915, 1033, 1177
TatI	WGTACW	2 cut(s)	356, 362
TauI	GCSGC	1 cut(s)	946
TfiI	GAWTC	7 cut(s)	182, 272, 326, 443, 473, 536, 1000
Tru1I	TTAA	3 cut(s)	230, 762, 1180
Tru9I	TTAA	3 cut(s)	230, 762, 1180
TscAI	CASTG	3 cut(s)	139, 183, 1125
TseFI	GTSAC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	170
TspRI	CASTG	3 cut(s)	139, 183, 1125
VpaK11BI	GGWCC	1 cut(s)	1096
VspI	ATTAAT	1 cut(s)	762
XapI	RAATTY	1 cut(s)	226
XceI	RCATGY	1 cut(s)	207
XmnI	GAANNNNTTC	1 cut(s)	723
XspI	CTAG	9 cut(s)	47, 60, 360, 369, 450, 839, 878, 1026, 1070
ZrmI	AGTACT	2 cut(s)	358, 364
Zsp2I	ATGCAT	1 cut(s)	771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.