Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0009848

Physical Location & Seq

Genomic Coordinates Reverse (-)

16094878 .. 16097586

Gene Structure 2709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G200100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGCAGCAGAACCACCCCAACACCAGTCGTCTTGTCCCCTTGTCCAACTATGACGTTAGAGAGCTAAAATTGGAAAACGGCCAATTGGCCATGCATGGCCTTGGTGGGCTTCTTCCCACATCCCAAGCGAAGCACACGTGGGGCAGGGCTGGTGACACACTAGAATCCGTGGTTCATCAAGCTACTCACCACAAACGTGAACCAAACTTGATCCACAATGGCCAGACACCGGCCAACATAAGCTCAATGCTTGCATCCTCTGGCCGAACATGGACTGACGAAGGAGGTCAGGTACCGTTGGCAGAGGGGTGGATGAGGAAACGTACTCGATCTGACTCCGATTACCATGGAAACAATTTTAGTGGTAGTACTACTAGCATTCACGAAGAGCATGCAGATCCCAGCACTTGTGCGAGTCCTAGTCCTAGTGCTAGTGCTAAATTGTGCAGGGACAACCAAAAAATTATGACTACATGGGCTTCGTTTGAGTCTCTTCCCAGCTTGAAGAGTACCAAAAGCCCCGACGAGGATTCAGCCTCTCACGGGGGATTGGAAAACCAAGATGATGGCCAAGAGACCACCAAAGACGGTGAATCAGGTCGTTCACGCTCCACAAGACCAAAGCGTGCTGCTGCTGTTCATAATCAGTCAGAGCGGAAACGAAGAGACCGGATCAATCAGAAGATGAAAGCTCTGCAAAGGTTGGTGCCAAATGCAAGTAAGACTGATAAGGCTTCAATGCTTGATGAGGTGATCAAATACTTGGAACAACTTCAAGCTCAAGTCCAAATGATGAGCAGTGTGAGAAATATGCCTCACATGAATATGAATATGAATATGATGATGCCTCTAGGAATGCAGCAGCAGCAGCAGCAGCAGCTTCATCAAATGTCATTCTTAGCACATATGGGCATGGGTGGTAATGTTGGTCCTCTTGGGCTAGGAATGGGAATGGGAATTGGAATTATTGACATGAGCAACAATATGGCACGCATGGCTGCTCATGCTCATCATCAATCTATTCGCCTGCCGATTCCTCATCCTACTCCAGTTATGGCGGCAGCTCCTACTTTCATTCCACCCTTTATGGTACCCCCATTGATGCCACGACACCCTCCTTCTCAAGCAAAGCCTGACCCTGCTTGCACCAATGCTTCAGACCCTTTGCCTGATCCATATGGTGCCCTTCTAGCACAACAATCAATGAATATGGACCTGTTCAATAGGATGGCAGCACTATATCACCAACAAGTCAATCACACAACAGCGGCAACAAGCAGCCCATCACAATCAAACCATGTGCAAGGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003700 GO:0005575 GO:0005911 GO:0006355 GO:0008150 GO:0009506 GO:0009566 GO:0009567 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0030054 GO:0031323 GO:0031326 GO:0044703 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

438

Amino Acids

47.93

Weight (kDa)

8.91

Isoelectric Point (pI)

56.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61270 AT5G61270 AT5G61270
fragaria_vesca	FvH4_5g14360
malus_domestica	MD06G1199400.v1.1 MD14G1208000.v1.1
prunus_persica	Prupe.5G200100_v2.0.a1
pyrus_communis	pycom06g17620 pycom14g17170
rosa_chinensis	RchiOBHm_Chr7g0182341
rosa_laevigata	RLG00000005129
rosa_multiflora	Rmu_sc0002070.1_g000014
rosa_roxburghii	Rroxscaffold_3G00271290
rosa_rugosa	Rorug06G0447100
rosa_samantha	Rh7AG050200 Rh7AG050400 Rh7BG050200 Rh7CG051500 Rh7CG051700 Rh7DG049400
rosa_wichuraiana	Rw7G004110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	292, 1090
AccB1I	GGYRCC	4 cut(s)	292, 706, 1090, 1181
AccBSI	CCGCTC	1 cut(s)	655
AciI	CCGC	3 cut(s)	655, 1058, 1268
AclWI	GGATC	4 cut(s)	205, 392, 680, 1166
AcoI	YGGCCR	6 cut(s)	79, 87, 220, 231, 262, 568
AcuI	CTGAAG	1 cut(s)	1140
AcvI	CACGTG	1 cut(s)	138
AfaI	GTAC	5 cut(s)	294, 325, 370, 511, 1092
AfiI	CCNNNNNNNGG	3 cut(s)	229, 526, 543
AflIII	ACRYGT	1 cut(s)	135
AgsI	TTSAA	4 cut(s)	505, 738, 776, 1222
AleI	CACNNNNGTG	1 cut(s)	195
AluBI	AGCT	8 cut(s)	64, 182, 243, 501, 692, 779, 880, 1064
AluI	AGCT	8 cut(s)	64, 182, 243, 501, 692, 779, 880, 1064
Alw26I	GTCTC	3 cut(s)	495, 569, 660
AlwI	GGATC	4 cut(s)	205, 392, 680, 1166
AoxI	GGCC	7 cut(s)	79, 87, 97, 220, 231, 262, 568
Asp700I	GAANNNNTTC	1 cut(s)	771
Asp718I	GGTACC	2 cut(s)	292, 1090
AspS9I	GGNCC	2 cut(s)	929, 1213
AsuHPI	GGTGA	5 cut(s)	164, 179, 602, 763, 1235
AvaII	GGWCC	2 cut(s)	929, 1213
BaeGI	GKGCMC	1 cut(s)	1186
BalI	TGGCCA	3 cut(s)	89, 222, 570
BanI	GGYRCC	4 cut(s)	292, 706, 1090, 1181
BbrPI	CACGTG	1 cut(s)	138
BccI	CCATC	3 cut(s)	560, 1222, 1291
BceAI	ACGGC	1 cut(s)	94
BcgI	CGANNNNNNTGC	2 cut(s)	374, 408
BclI	TGATCA	1 cut(s)	753
BcoDI	GTCTC	3 cut(s)	495, 569, 660
BfaI	CTAG	8 cut(s)	161, 375, 420, 426, 432, 851, 941, 1190
BmcAI	AGTACT	1 cut(s)	370
Bme18I	GGWCC	2 cut(s)	929, 1213
BmgT120I	GGNCC	2 cut(s)	929, 1213
BmiI	GGNNCC	4 cut(s)	294, 708, 1092, 1183
BmsI	GCATC	3 cut(s)	263, 834, 1092
BpmI	CTGGAG	1 cut(s)	1032
BpuEI	CTTGAG	2 cut(s)	765, 1107
BsaAI	YACGTR	1 cut(s)	138
BsaI	GGTCTC	2 cut(s)	569, 660
BsaJI	CCNNGG	3 cut(s)	100, 168, 346
BsaWI	WCCGGW	1 cut(s)	669
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	3 cut(s)	229, 526, 543
Bse118I	RCCGGY	1 cut(s)	229
Bse1I	ACTGG	2 cut(s)	24, 1049
BseDI	CCNNGG	3 cut(s)	100, 168, 346
BseGI	GGATG	5 cut(s)	119, 254, 318, 1039, 1233
BseLI	CCNNNNNNNGG	3 cut(s)	229, 526, 543
BseNI	ACTGG	2 cut(s)	24, 1049
BseSI	GKGCMC	1 cut(s)	1186
BseYI	CCCAGC	2 cut(s)	401, 497
BsgI	GTGCAG	1 cut(s)	466
BshFI	GGCC	7 cut(s)	81, 89, 99, 222, 233, 264, 570
BshNI	GGYRCC	4 cut(s)	292, 706, 1090, 1181
BsiSI	CCGG	2 cut(s)	230, 670
BslFI	GGGAC	2 cut(s)	20, 464
BslI	CCNNNNNNNGG	3 cut(s)	229, 526, 543
BsmAI	GTCTC	3 cut(s)	495, 569, 660
BsmFI	GGGAC	2 cut(s)	20, 464
BsmI	GAATGC	2 cut(s)	378, 861
BsnI	GGCC	7 cut(s)	81, 89, 99, 222, 233, 264, 570
Bso31I	GGTCTC	2 cut(s)	569, 660
Bsp1286I	GDGCHC	1 cut(s)	1186
Bsp143I	GATC	6 cut(s)	210, 329, 397, 672, 753, 1171
Bsp19I	CCATGG	1 cut(s)	346
BspACI	CCGC	3 cut(s)	655, 1058, 1268
BspANI	GGCC	7 cut(s)	81, 89, 99, 222, 233, 264, 570
BspLI	GGNNCC	4 cut(s)	294, 708, 1092, 1183
BspPI	GGATC	4 cut(s)	205, 392, 680, 1166
BspQI	GCTCTTC	1 cut(s)	381
BspT107I	GGYRCC	4 cut(s)	292, 706, 1090, 1181
BspTNI	GGTCTC	2 cut(s)	569, 660
BsrBI	CCGCTC	1 cut(s)	655
BsrFI	RCCGGY	1 cut(s)	229
BsrI	ACTGG	2 cut(s)	24, 1049
BssAI	RCCGGY	1 cut(s)	229
BssECI	CCNNGG	3 cut(s)	100, 168, 346
BssMI	GATC	6 cut(s)	210, 329, 397, 672, 753, 1171
BssT1I	CCWWGG	2 cut(s)	100, 346
Bst4CI	ACNGT	2 cut(s)	297, 590
Bst6I	CTCTTC	4 cut(s)	381, 498, 500, 658
BstBAI	YACGTR	1 cut(s)	138
BstC8I	GCNNGC	6 cut(s)	252, 393, 627, 991, 1028, 1144
BstDEI	CTNAG	1 cut(s)	898
BstDSI	CCRYGG	2 cut(s)	168, 346
BstF5I	GGATG	5 cut(s)	119, 254, 318, 1039, 1233
BstKTI	GATC	6 cut(s)	213, 332, 400, 675, 756, 1174
BstMAI	GTCTC	3 cut(s)	495, 569, 660
BstMBI	GATC	6 cut(s)	210, 329, 397, 672, 753, 1171
BstMWI	GCNNNNNNNGC	8 cut(s)	865, 868, 871, 874, 877, 995, 1004, 1190
BstNSI	RCATGY	1 cut(s)	395
BstSLI	GKGCMC	1 cut(s)	1186
BstX2I	RGATCY	1 cut(s)	397
BstXI	CCANNNNNNTGG	1 cut(s)	566
BstYI	RGATCY	1 cut(s)	397
BsuRI	GGCC	7 cut(s)	81, 89, 99, 222, 233, 264, 570
BtgI	CCRYGG	2 cut(s)	168, 346
BtsCI	GGATG	5 cut(s)	119, 254, 318, 1039, 1233
BtsI	GCAGTG	1 cut(s)	805
BtsIMutI	CAGTG	1 cut(s)	805
Cac8I	GCNNGC	6 cut(s)	252, 393, 627, 991, 1028, 1144
Cfr10I	RCCGGY	1 cut(s)	229
Cfr13I	GGNCC	2 cut(s)	929, 1213
Csp6I	GTAC	5 cut(s)	293, 324, 369, 510, 1091
CspCI	CAANNNNNGTGG	2 cut(s)	343, 378
CviQI	GTAC	5 cut(s)	293, 324, 369, 510, 1091
DdeI	CTNAG	1 cut(s)	898
DpnI	GATC	6 cut(s)	212, 331, 399, 674, 755, 1173
DpnII	GATC	6 cut(s)	210, 329, 397, 672, 753, 1171
EaeI	YGGCCR	6 cut(s)	79, 87, 220, 231, 262, 568
Eam1104I	CTCTTC	4 cut(s)	381, 498, 500, 658
EarI	CTCTTC	4 cut(s)	381, 498, 500, 658
Eco130I	CCWWGG	2 cut(s)	100, 346
Eco31I	GGTCTC	2 cut(s)	569, 660
Eco47I	GGWCC	2 cut(s)	929, 1213
Eco57I	CTGAAG	1 cut(s)	1140
Eco72I	CACGTG	1 cut(s)	138
EcoT14I	CCWWGG	2 cut(s)	100, 346
EcoT22I	ATGCAT	1 cut(s)	96
ErhI	CCWWGG	2 cut(s)	100, 346
FaqI	GGGAC	2 cut(s)	20, 464
FauNDI	CATATG	2 cut(s)	906, 1177
FbaI	TGATCA	1 cut(s)	753
FokI	GGATG	5 cut(s)	106, 241, 325, 1026, 1240
FspBI	CTAG	8 cut(s)	161, 375, 420, 426, 432, 851, 941, 1190
GsaI	CCCAGC	2 cut(s)	405, 501
GsuI	CTGGAG	1 cut(s)	1032
HaeIII	GGCC	7 cut(s)	81, 89, 99, 222, 233, 264, 570
HapII	CCGG	2 cut(s)	230, 670
HinfI	GANTC	7 cut(s)	164, 335, 415, 488, 530, 593, 1033
HpaII	CCGG	2 cut(s)	230, 670
HphI	GGTGA	5 cut(s)	164, 179, 602, 763, 1235
Hpy166II	GTNNAC	2 cut(s)	200, 605
Hpy188I	TCNGA	5 cut(s)	334, 340, 652, 681, 1159
Hpy188III	TCNNGA	1 cut(s)	383
Hpy8I	GTNNAC	2 cut(s)	200, 605
Hpy99I	CGWCG	1 cut(s)	527
HpyAV	CCTTC	3 cut(s)	275, 1128, 1196
HpyCH4III	ACNGT	2 cut(s)	297, 590
HpyCH4IV	ACGT	4 cut(s)	54, 137, 196, 322
HpyF10VI	GCNNNNNNNGC	8 cut(s)	865, 868, 871, 874, 877, 995, 1004, 1190
HpyF3I	CTNAG	1 cut(s)	898
HpySE526I	ACGT	4 cut(s)	54, 137, 196, 322
KpnI	GGTACC	2 cut(s)	296, 1094
Ksp22I	TGATCA	1 cut(s)	753
Kzo9I	GATC	6 cut(s)	210, 329, 397, 672, 753, 1171
LguI	GCTCTTC	1 cut(s)	381
LmnI	GCTCC	2 cut(s)	614, 1069
LweI	GCATC	3 cut(s)	263, 834, 1092
MaeI	CTAG	8 cut(s)	161, 375, 420, 426, 432, 851, 941, 1190
MaeII	ACGT	4 cut(s)	54, 137, 196, 322
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	6 cut(s)	212, 331, 399, 674, 755, 1173
MbiI	CCGCTC	1 cut(s)	655
MboI	GATC	6 cut(s)	210, 329, 397, 672, 753, 1171
MboII	GAAGA	6 cut(s)	104, 398, 485, 517, 675, 694
MfeI	CAATTG	1 cut(s)	83
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	1 cut(s)	1186
MlsI	TGGCCA	3 cut(s)	89, 222, 570
MluCI	AATT	7 cut(s)	68, 83, 355, 440, 462, 957, 963
MluNI	TGGCCA	3 cut(s)	89, 222, 570
MlyI	GAGTC	3 cut(s)	329, 424, 497
MmeI	TCCRAC	1 cut(s)	69
Mox20I	TGGCCA	3 cut(s)	89, 222, 570
Mph1103I	ATGCAT	1 cut(s)	96
MroXI	GAANNNNTTC	1 cut(s)	771
MscI	TGGCCA	3 cut(s)	89, 222, 570
MslI	CAYNNNNRTG	2 cut(s)	195, 824
Msp20I	TGGCCA	3 cut(s)	89, 222, 570
MspA1I	CMGCKG	1 cut(s)	1268
MspI	CCGG	2 cut(s)	230, 670
MunI	CAATTG	1 cut(s)	83
Mva1269I	GAATGC	2 cut(s)	378, 861
MwoI	GCNNNNNNNGC	8 cut(s)	865, 868, 871, 874, 877, 995, 1004, 1190
NcoI	CCATGG	1 cut(s)	346
NdeI	CATATG	2 cut(s)	906, 1177
NdeII	GATC	6 cut(s)	210, 329, 397, 672, 753, 1171
NlaIV	GGNNCC	4 cut(s)	294, 708, 1092, 1183
NmuCI	GTSAC	1 cut(s)	152
NsiI	ATGCAT	1 cut(s)	96
NspI	RCATGY	1 cut(s)	395
OliI	CACNNNNGTG	1 cut(s)	195
PaeI	GCATGC	1 cut(s)	395
PciSI	GCTCTTC	1 cut(s)	381
PctI	GAATGC	2 cut(s)	378, 861
PdmI	GAANNNNTTC	1 cut(s)	771
PfeI	GAWTC	4 cut(s)	164, 530, 593, 1033
PleI	GAGTC	3 cut(s)	329, 423, 496
PmaCI	CACGTG	1 cut(s)	138
PmlI	CACGTG	1 cut(s)	138
PpsI	GAGTC	3 cut(s)	329, 423, 496
Ppu21I	YACGTR	1 cut(s)	138
PspCI	CACGTG	1 cut(s)	138
PspFI	CCCAGC	2 cut(s)	401, 497
PspN4I	GGNNCC	4 cut(s)	294, 708, 1092, 1183
PspPI	GGNCC	2 cut(s)	929, 1213
PsuI	RGATCY	1 cut(s)	397
RsaI	GTAC	5 cut(s)	294, 325, 370, 511, 1092
RsaNI	GTAC	5 cut(s)	293, 324, 369, 510, 1091
RseI	CAYNNNNRTG	2 cut(s)	195, 824
SapI	GCTCTTC	1 cut(s)	381
Sau3AI	GATC	6 cut(s)	210, 329, 397, 672, 753, 1171
Sau96I	GGNCC	2 cut(s)	929, 1213
ScaI	AGTACT	1 cut(s)	370
SchI	GAGTC	3 cut(s)	329, 424, 497
SduI	GDGCHC	1 cut(s)	1186
SfaNI	GCATC	3 cut(s)	263, 834, 1092
SinI	GGWCC	2 cut(s)	929, 1213
SmiMI	CAYNNNNRTG	2 cut(s)	195, 824
SmlI	CTYRAG	2 cut(s)	780, 1122
SmoI	CTYRAG	2 cut(s)	780, 1122
SphI	GCATGC	1 cut(s)	395
Sse9I	AATT	7 cut(s)	68, 83, 355, 440, 462, 957, 963
SsiI	CCGC	3 cut(s)	655, 1058, 1268
SspMI	CTAG	8 cut(s)	161, 375, 420, 426, 432, 851, 941, 1190
StyI	CCWWGG	2 cut(s)	100, 346
TaaI	ACNGT	2 cut(s)	297, 590
TaiI	ACGT	4 cut(s)	57, 140, 199, 325
TaqI	TCGA	1 cut(s)	328
TasI	AATT	7 cut(s)	68, 83, 355, 440, 462, 957, 963
TatI	WGTACW	1 cut(s)	368
TauI	GCSGC	2 cut(s)	1061, 1271
TfiI	GAWTC	4 cut(s)	164, 530, 593, 1033
TscAI	CASTG	1 cut(s)	805
TseFI	GTSAC	1 cut(s)	152
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	9 cut(s)	164, 629, 701, 836, 842, 848, 872, 1063, 1220
TspGWI	ACGGA	1 cut(s)	157
TspRI	CASTG	1 cut(s)	805
VpaK11BI	GGWCC	2 cut(s)	929, 1213
XceI	RCATGY	1 cut(s)	395
XmnI	GAANNNNTTC	1 cut(s)	771
XspI	CTAG	8 cut(s)	161, 375, 420, 426, 432, 851, 941, 1190
ZrmI	AGTACT	1 cut(s)	370
Zsp2I	ATGCAT	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.