Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0009848

Physical Location & Seq

Genomic Coordinates Reverse (-)

21539288 .. 21541688

Gene Structure 2401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g17620.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGCAACAGCAGAACCAACCCAACGCCAGTCTTCTTGTCCCTTTGTCTAATTATGACGTCACAGAGCTAAAATTGGAAAATAGCCAGTTGGTCATGTATGGGCTTGGTGGGCTTCCTCCCACATCCCAATCAAAGCCCGCATGGCGCAGGAGCATGGCTTGTGACACATTAGAATCAATTGTCGATCAAGCTACATGCCACAAACGTGACCCAAATATCATCCGCCATGACCAGACACCGGCCAACATAAGCTCAATGGTTGCATCCTCCGGCGGAACATGGACTGACAGCTCTGTCCAAGTACCGCCGGCACAGGGGTGGATAAGAAAACGCACTCAGTCAGATTCCGGCTTCTTTGAGAATAATTTTAGTAGTAAGACTAATAGCATTCATGAAGAACATGCAGATCCCAGTAGTGTTAGATTGTGCAGGGACAATGATACAACTATGTCCACATTGGTTTCTTTTGAGTCTCCTCCCAGTTTGAAGACCAAAAGCATCGAAGAGGATTCGGCCTGTCACGGAGGACTGAAAAACCGAGATGATGGCCGGGAAACCACCAAGGGTGGAAAACCAAGCCGTTCACACTCAACAAGACCAAGGCGAGCTGCTGCTGTTCATAATCAGTCAGAGCGGAAACGAAGAGACCGGATTAACCAGAAGATGAAAGCTCTGCAAAGGTTGGTGCCAAATGCAAGTAAGACTAATAAAGCTTCAATGCTTGATGAGGTGATCAAATACTTGCAACAACTTCAAGCTCAAGTCCAAATGATGCATAGTATGAGAAATTTCATGCCTAATGGCCATATGAACATGAATATGATGATGCCTTTAGAAATTCAGCAGCAGCAGCAGCAACATCTTCATCAAATGTCACTCCTCGCTCATATGGGAATGGGAACGGGAACGGGAACGCTCATTCATCCTACACCGGTTGTGGCTGCCGCTCCTCCTTCTTTCATGCCGCCCTTTATGATGCCACCGTTGATGCCACCGCACCCTCCTCCTCAAGCAAAGCCTGAACCAACCGGCACTAACGATGGTTCAGACCCTCTACCTGATCCATATTGTTCCCTCCTAGCACAGCAATCAATGAATATGGACCTGTTCAACAGGATGGCAGCTCTCTATCGCCAACAAGTCACTCCGGCGACAGCAGCGTCAAGCAGCCTGTCACAGTCAAGCCAGGTTCGAAGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003700 GO:0005575 GO:0005911 GO:0006355 GO:0008150 GO:0009506 GO:0009566 GO:0009567 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0030054 GO:0031323 GO:0031326 GO:0044703 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

401

Amino Acids

44.37

Weight (kDa)

9.3

Isoelectric Point (pI)

72.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61270 AT5G61270 AT5G61270
fragaria_vesca	FvH4_5g14360
malus_domestica	MD06G1199400.v1.1 MD14G1208000.v1.1
prunus_persica	Prupe.5G200100_v2.0.a1
pyrus_communis	pycom06g17620 pycom14g17170
rosa_chinensis	RchiOBHm_Chr7g0182341
rosa_laevigata	RLG00000005129
rosa_multiflora	Rmu_sc0002070.1_g000014
rosa_roxburghii	Rroxscaffold_3G00271290
rosa_rugosa	Rorug06G0447100
rosa_samantha	Rh7AG050200 Rh7AG050400 Rh7BG050200 Rh7CG051500 Rh7CG051700 Rh7DG049400
rosa_wichuraiana	Rw7G004110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	293, 1159
AatII	GACGTC	1 cut(s)	60
AccB1I	GGYRCC	1 cut(s)	685
AccBSI	CCGCTC	2 cut(s)	634, 947
AciI	CCGC	8 cut(s)	138, 223, 273, 305, 634, 945, 965, 995
AclWI	GGATC	2 cut(s)	401, 1055
AcoI	YGGCCR	3 cut(s)	240, 547, 802
AcsI	RAATTY	2 cut(s)	787, 837
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	1 cut(s)	303
AfiI	CCNNNNNNNGG	2 cut(s)	238, 314
AgeI	ACCGGT	1 cut(s)	931
AgsI	TTSAA	4 cut(s)	487, 717, 755, 1111
AjnI	CCWGG	1 cut(s)	1185
AleI	CACNNNNGTG	2 cut(s)	204, 316
AluBI	AGCT	9 cut(s)	67, 191, 252, 291, 608, 671, 713, 758, 1124
AluI	AGCT	9 cut(s)	67, 191, 252, 291, 608, 671, 713, 758, 1124
Alw26I	GTCTC	2 cut(s)	477, 639
AlwI	GGATC	2 cut(s)	401, 1055
AoxI	GGCC	4 cut(s)	240, 513, 547, 802
ApoI	RAATTY	2 cut(s)	787, 837
AsiGI	ACCGGT	1 cut(s)	931
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	1 cut(s)	1102
AsuC2I	CCSGG	1 cut(s)	551
AsuHPI	GGTGA	1 cut(s)	742
AsuII	TTCGAA	1 cut(s)	1192
AvaII	GGWCC	1 cut(s)	1102
BalI	TGGCCA	1 cut(s)	804
BanI	GGYRCC	1 cut(s)	685
BbsI	GAAGAC	2 cut(s)	23, 494
BccI	CCATC	3 cut(s)	539, 1034, 1111
BceAI	ACGGC	1 cut(s)	564
BciT130I	CCWGG	1 cut(s)	1187
BclI	TGATCA	1 cut(s)	732
BcnI	CCSGG	1 cut(s)	551
BcoDI	GTCTC	2 cut(s)	477, 639
BfaI	CTAG	2 cut(s)	1079, 1201
BglI	GCCNNNNNGGC	1 cut(s)	142
Bme1390I	CCNGG	2 cut(s)	551, 1187
Bme18I	GGWCC	1 cut(s)	1102
BmgT120I	GGNCC	1 cut(s)	1102
BmiI	GGNNCC	1 cut(s)	687
BmrFI	CCNGG	2 cut(s)	551, 1187
BmrI	ACTGGG	2 cut(s)	405, 474
BmsI	GCATC	6 cut(s)	272, 507, 762, 816, 966, 978
BmuI	ACTGGG	2 cut(s)	405, 474
BpiI	GAAGAC	2 cut(s)	23, 494
Bpu14I	TTCGAA	1 cut(s)	1192
BpuEI	CTTGAG	2 cut(s)	744, 993
BpuMI	CCSGG	1 cut(s)	551
BsaHI	GRCGYC	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	639
BsaJI	CCNNGG	2 cut(s)	561, 599
BsaWI	WCCGGW	2 cut(s)	648, 931
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 314
Bse118I	RCCGGY	4 cut(s)	238, 307, 931, 1028
Bse1I	ACTGG	4 cut(s)	27, 85, 411, 480
BseBI	CCWGG	1 cut(s)	1187
BseDI	CCNNGG	2 cut(s)	561, 599
BseGI	GGATG	5 cut(s)	122, 219, 263, 922, 1122
BseLI	CCNNNNNNNGG	2 cut(s)	238, 314
BseMII	CTCAG	1 cut(s)	350
BseNI	ACTGG	4 cut(s)	27, 85, 411, 480
BseRI	GAGGAG	5 cut(s)	465, 869, 939, 993, 996
BsgI	GTGCAG	1 cut(s)	448
BshFI	GGCC	4 cut(s)	242, 515, 549, 804
BshNI	GGYRCC	1 cut(s)	685
BshTI	ACCGGT	1 cut(s)	931
BsiSI	CCGG	9 cut(s)	239, 270, 308, 348, 550, 649, 932, 1029, 1148
BslFI	GGGAC	2 cut(s)	23, 446
BslI	CCNNNNNNNGG	2 cut(s)	238, 314
BsmAI	GTCTC	2 cut(s)	477, 639
BsmFI	GGGAC	2 cut(s)	23, 446
BsmI	GAATGC	1 cut(s)	387
BsnI	GGCC	4 cut(s)	242, 515, 549, 804
Bso31I	GGTCTC	1 cut(s)	639
Bsp119I	TTCGAA	1 cut(s)	1192
Bsp143I	GATC	4 cut(s)	184, 406, 732, 1060
BspACI	CCGC	8 cut(s)	138, 223, 273, 305, 634, 945, 965, 995
BspANI	GGCC	4 cut(s)	242, 515, 549, 804
BspCNI	CTCAG	1 cut(s)	349
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	1 cut(s)	687
BspPI	GGATC	2 cut(s)	401, 1055
BspT104I	TTCGAA	1 cut(s)	1192
BspT107I	GGYRCC	1 cut(s)	685
BspTNI	GGTCTC	1 cut(s)	639
BsrBI	CCGCTC	2 cut(s)	634, 947
BsrFI	RCCGGY	4 cut(s)	238, 307, 931, 1028
BsrI	ACTGG	4 cut(s)	27, 85, 411, 480
BssAI	RCCGGY	4 cut(s)	238, 307, 931, 1028
BssECI	CCNNGG	2 cut(s)	561, 599
BssMI	GATC	4 cut(s)	184, 406, 732, 1060
BssNI	GRCGYC	1 cut(s)	57
BssT1I	CCWWGG	2 cut(s)	561, 599
Bst2UI	CCWGG	1 cut(s)	1187
Bst4CI	ACNGT	2 cut(s)	984, 1179
Bst6I	CTCTTC	2 cut(s)	498, 637
BstACI	GRCGYC	1 cut(s)	57
BstBI	TTCGAA	1 cut(s)	1192
BstC8I	GCNNGC	3 cut(s)	138, 309, 606
BstDEI	CTNAG	1 cut(s)	336
BstF5I	GGATG	5 cut(s)	122, 219, 263, 922, 1122
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	4 cut(s)	187, 409, 735, 1063
BstMAI	GTCTC	2 cut(s)	477, 639
BstMBI	GATC	4 cut(s)	184, 406, 732, 1060
BstMWI	GCNNNNNNNGC	5 cut(s)	109, 142, 850, 853, 1157
BstNI	CCWGG	1 cut(s)	1187
BstNSI	RCATGY	2 cut(s)	198, 404
BstSCI	CCNGG	2 cut(s)	549, 1185
BstV2I	GAAGAC	2 cut(s)	23, 494
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
BsuRI	GGCC	4 cut(s)	242, 515, 549, 804
BtsCI	GGATG	5 cut(s)	122, 219, 263, 922, 1122
Cac8I	GCNNGC	3 cut(s)	138, 309, 606
CciI	TCATGA	1 cut(s)	391
CfoI	GCGC	1 cut(s)	147
Cfr10I	RCCGGY	4 cut(s)	238, 307, 931, 1028
Cfr13I	GGNCC	1 cut(s)	1102
CseI	GACGC	1 cut(s)	1149
Csp6I	GTAC	1 cut(s)	302
CspAI	ACCGGT	1 cut(s)	931
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	4 cut(s)	186, 408, 734, 1062
DpnII	GATC	4 cut(s)	184, 406, 732, 1060
DrdI	GACNNNNNNGTC	2 cut(s)	293, 1159
DseDI	GACNNNNNNGTC	2 cut(s)	293, 1159
EaeI	YGGCCR	3 cut(s)	240, 547, 802
Eam1104I	CTCTTC	2 cut(s)	498, 637
EarI	CTCTTC	2 cut(s)	498, 637
EciI	GGCGGA	2 cut(s)	212, 288
Eco130I	CCWWGG	2 cut(s)	561, 599
Eco31I	GGTCTC	1 cut(s)	639
Eco47I	GGWCC	1 cut(s)	1102
EcoRII	CCWGG	1 cut(s)	1185
EcoT14I	CCWWGG	2 cut(s)	561, 599
EcoT22I	ATGCAT	1 cut(s)	777
ErhI	CCWWGG	2 cut(s)	561, 599
FaqI	GGGAC	2 cut(s)	23, 446
FauI	CCCGC	1 cut(s)	145
FauNDI	CATATG	2 cut(s)	807, 888
FbaI	TGATCA	1 cut(s)	732
FokI	GGATG	5 cut(s)	109, 206, 250, 909, 1129
FspBI	CTAG	2 cut(s)	1079, 1201
GlaI	GCGC	1 cut(s)	146
HaeIII	GGCC	4 cut(s)	242, 515, 549, 804
HapII	CCGG	9 cut(s)	239, 270, 308, 348, 550, 649, 932, 1029, 1148
HgaI	GACGC	1 cut(s)	1149
HhaI	GCGC	1 cut(s)	147
Hin1I	GRCGYC	1 cut(s)	57
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HindIII	AAGCTT	1 cut(s)	711
HinfI	GANTC	4 cut(s)	173, 344, 470, 509
HpaII	CCGG	9 cut(s)	239, 270, 308, 348, 550, 649, 932, 1029, 1148
HphI	GGTGA	1 cut(s)	742
Hpy166II	GTNNAC	2 cut(s)	453, 584
Hpy188I	TCNGA	3 cut(s)	343, 631, 1048
Hpy188III	TCNNGA	1 cut(s)	392
Hpy8I	GTNNAC	2 cut(s)	453, 584
HpyAV	CCTTC	2 cut(s)	963, 1188
HpyCH4III	ACNGT	2 cut(s)	984, 1179
HpyCH4IV	ACGT	2 cut(s)	57, 205
HpyCH4V	TGCA	8 cut(s)	4, 263, 404, 429, 676, 695, 745, 775
HpyF10VI	GCNNNNNNNGC	5 cut(s)	109, 142, 850, 853, 1157
HpyF3I	CTNAG	1 cut(s)	336
HpySE526I	ACGT	2 cut(s)	57, 205
Hsp92I	GRCGYC	1 cut(s)	57
HspAI	GCGC	1 cut(s)	145
KroI	GCCGGC	1 cut(s)	307
KroNI	GCCGGC	1 cut(s)	309
Ksp22I	TGATCA	1 cut(s)	732
Kzo9I	GATC	4 cut(s)	184, 406, 732, 1060
LmnI	GCTCC	2 cut(s)	150, 952
LweI	GCATC	6 cut(s)	272, 507, 762, 816, 966, 978
MaeI	CTAG	2 cut(s)	1079, 1201
MaeII	ACGT	2 cut(s)	57, 205
MaeIII	GTNAC	7 cut(s)	58, 161, 206, 518, 873, 1141, 1173
MalI	GATC	4 cut(s)	186, 408, 734, 1062
MbiI	CCGCTC	2 cut(s)	634, 947
MboI	GATC	4 cut(s)	184, 406, 732, 1060
MboII	GAAGA	7 cut(s)	23, 407, 499, 515, 654, 673, 854
MfeI	CAATTG	1 cut(s)	177
MflI	RGATCY	1 cut(s)	406
MlsI	TGGCCA	1 cut(s)	804
MluCI	AATT	6 cut(s)	49, 71, 177, 364, 787, 837
MluNI	TGGCCA	1 cut(s)	804
MlyI	GAGTC	1 cut(s)	479
Mox20I	TGGCCA	1 cut(s)	804
Mph1103I	ATGCAT	1 cut(s)	777
MroNI	GCCGGC	1 cut(s)	307
MscI	TGGCCA	1 cut(s)	804
MseI	TTAA	1 cut(s)	654
MslI	CAYNNNNRTG	3 cut(s)	204, 316, 818
Msp20I	TGGCCA	1 cut(s)	804
MspI	CCGG	9 cut(s)	239, 270, 308, 348, 550, 649, 932, 1029, 1148
MspR9I	CCNGG	2 cut(s)	551, 1187
MunI	CAATTG	1 cut(s)	177
Mva1269I	GAATGC	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	1187
MwoI	GCNNNNNNNGC	5 cut(s)	109, 142, 850, 853, 1157
NaeI	GCCGGC	1 cut(s)	309
NciI	CCSGG	1 cut(s)	551
NdeI	CATATG	2 cut(s)	807, 888
NdeII	GATC	4 cut(s)	184, 406, 732, 1060
NgoMIV	GCCGGC	1 cut(s)	307
NlaIV	GGNNCC	1 cut(s)	687
NmuCI	GTSAC	7 cut(s)	58, 161, 206, 518, 873, 1141, 1173
NsiI	ATGCAT	1 cut(s)	777
NspI	RCATGY	2 cut(s)	198, 404
NspV	TTCGAA	1 cut(s)	1192
OliI	CACNNNNGTG	2 cut(s)	204, 316
PagI	TCATGA	1 cut(s)	391
PctI	GAATGC	1 cut(s)	387
PdiI	GCCGGC	1 cut(s)	309
PfeI	GAWTC	3 cut(s)	173, 344, 509
PinAI	ACCGGT	1 cut(s)	931
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
Psp6I	CCWGG	1 cut(s)	1185
PspGI	CCWGG	1 cut(s)	1185
PspN4I	GGNNCC	1 cut(s)	687
PspPI	GGNCC	1 cut(s)	1102
PsuI	RGATCY	1 cut(s)	406
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
RseI	CAYNNNNRTG	3 cut(s)	204, 316, 818
SaqAI	TTAA	1 cut(s)	654
Sau3AI	GATC	4 cut(s)	184, 406, 732, 1060
Sau96I	GGNCC	1 cut(s)	1102
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	2 cut(s)	551, 1187
SfaNI	GCATC	6 cut(s)	272, 507, 762, 816, 966, 978
SfuI	TTCGAA	1 cut(s)	1192
SinI	GGWCC	1 cut(s)	1102
SmiMI	CAYNNNNRTG	3 cut(s)	204, 316, 818
SmlI	CTYRAG	2 cut(s)	759, 1008
SmoI	CTYRAG	2 cut(s)	759, 1008
Sse9I	AATT	6 cut(s)	49, 71, 177, 364, 787, 837
SsiI	CCGC	8 cut(s)	138, 223, 273, 305, 634, 945, 965, 995
SspMI	CTAG	2 cut(s)	1079, 1201
StyD4I	CCNGG	2 cut(s)	549, 1185
StyI	CCWWGG	2 cut(s)	561, 599
TaaI	ACNGT	2 cut(s)	984, 1179
TaiI	ACGT	2 cut(s)	60, 208
TaqI	TCGA	3 cut(s)	183, 501, 1192
TasI	AATT	6 cut(s)	49, 71, 177, 364, 787, 837
TauI	GCSGC	2 cut(s)	947, 967
TfiI	GAWTC	3 cut(s)	173, 344, 509
Tru1I	TTAA	1 cut(s)	654
Tru9I	TTAA	1 cut(s)	654
TseFI	GTSAC	7 cut(s)	58, 161, 206, 518, 873, 1141, 1173
Tsp45I	GTSAC	7 cut(s)	58, 161, 206, 518, 873, 1141, 1173
TspGWI	ACGGA	1 cut(s)	537
VpaK11BI	GGWCC	1 cut(s)	1102
XapI	RAATTY	2 cut(s)	787, 837
XceI	RCATGY	2 cut(s)	198, 404
XspI	CTAG	2 cut(s)	1079, 1201
ZraI	GACGTC	1 cut(s)	58
Zsp2I	ATGCAT	1 cut(s)	777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.