Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006789

Physical Location & Seq

Genomic Coordinates Reverse (-)

57781500 .. 57786454

Gene Structure 4955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0447100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1692 bp

ATGGATGAGTATTCCGGTAAAAGAGCTAGTGATGGACTTGTCTCTAGAAAGGGGCCTAGTCTTGTTTTGAGGGAAACTCCAAACAAAGATCGTAATGCTCAGGTCTGCAGCCGACTGGGATGCAGTGGAAGACTGAATTCTGTGAAAGGTGCTCAAATTGAAAAGGCCAAATCTTCAAAGCCTGCATTCCGCTCTTCTTCAAATGGTAAAGAGATAGTTGGAAGTTCCTCTAGGTCTTGCATTTCTGTTGGCAACTCAAGAAAATCCGGTAGAGAACCTTGCAAAAAGCTATCTTCTAATTTGGAAACAGATTCATCTGAAACCAGCAGTGTTCAGGATGATCCAGAAGTGTCAGAAGTCACTCCTCCACCTGGAAAGATTCAGAGAGGACTTCACCCTGAATCTAAAAATGGGGAGTCTAGTGAAGTCTCCTTGATGGAAGTTGGAAGCTCCGATGTATCATCAAATACAAGATCCCGGAGGAATTTCAATCAGAGAACTGGATTGCGCAACCAAGAAACGTTATTGGGTTCTTCTGTTCCTTTCGGATATAAAAACAACAACCAGACAACACGATCTAGCACAACCAGGAATGGCTTAAGAAATCTAAGGTGCAATTCAGTATCTGATGTTGTTCCGTCCAGTTGTTCATCATCAGACTCGAGCGTCAACAGGAGGGAGACCCTAAAGAAAAGAATTTCTGAAGGAGAAAGTAGCTCAGCTGCTAAGGGGAAGAAGATGAATGGGTCATCTTCTGGGCAAAACTCCAGTTCGAGCCATGGAATCTCAATTGCTGATTCAAGAAGAGGTAGAAATATACCTCCTAACAGGGATAATGGTGTTGCGTCAGTTAGGACTCGGAGAACTGTTACTGGTCACACAAGGGCTAGGATTTCTAATCAAGGAAGTGGAAACAATATGTCAAGCAATGGATCTTCTGCAGTTGGCCCTCATATGTCCCAACCTGAGATGTCTATCGATATGAATGGTGCTAGTTCATCACAACACTTATCTTCTGAAGCTCCTTTAAATCGGCCAAATTCTTATAGTAGACCAGGTAGTAGCAGTAGACCAGGTAGTGGCAGTGGGAGTTTACATGGCATGATGCGATCTGGTACTGCAGATATTGGTTTTTCCCGGTCTCTAATGAATCAGGATGGTCAGCGACGCTACAACATGGATGGAATTGCAGAGGTATTGCTAGCACTGGAGAGGATTGAACAAGATGAAGAGCTATCATTTGAGCAAATACTTGTTCTTGAGACCAATTTGTTCCTGAATGGCCTAAACTTCTATGATCAGCATAGAGACATGAGACTGGATATCGATAACATGTCATATGAGGAATTGTTAGCATTAGAAGAGAGAATGGGTTCTGTAAGCACAGCATTGCCAGAAGAAGCACTGACAGATTGCATTAAGAAAAGCATCTATCAGTCTGAACCTCCAGAGGATGCATCCATAGGCTGTGATAATAAGGATGAAGTCAAATGCAGTATCTGCCAGGAGGAATATGTGGCTGGAGACGAAGTTGGGAGGTTGCGGTGTGAGCATAGTTATCATTTAGTCTGCGTAAATCAATGGCTGCGGGTTAAGAATTGGTGCCCTATATGCAAGGCGGCAGTGGCTACAGCTGCGGCTGAACCCTCATCACCATCACCATCATCACCCTCATCACCATATTCGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000228 GO:0000733 GO:0003674 GO:0003676 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0017111 GO:0019219 GO:0019222 GO:0031297 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031593 GO:0031974 GO:0031981 GO:0032392 GO:0033554 GO:0034641 GO:0034645 GO:0036292 GO:0036310 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045005 GO:0045910 GO:0045934 GO:0046483 GO:0048478 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070530 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090329 GO:0097159 GO:0097617 GO:0140030 GO:0140097 GO:1901360 GO:1901363 GO:1901576 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HNH Helicase_C SNF2_N

Protein Analysis

563

Amino Acids

60.8

Weight (kDa)

8.57

Isoelectric Point (pI)

61.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	488 - 539	7e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	497 - 539	2.2e-11	Ring finger domain
zf-C3HC4_2	PF13923	497 - 538	1.9e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	498 - 525	9.7e-06	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07810
fragaria_vesca	FvH4_5g14341 FvH4_5g14341 FvH4_5g14341 FvH4_5g14341
malus_domestica	MD14G1208200.v1.1
prunus_persica	Prupe.5G200300_v2.0.a1
pyrus_communis	pycom14g17190 pycom14g17200
rosa_chinensis	RchiOBHm_Chr7g0182391
rosa_laevigata	RLG00000005127
rosa_multiflora	Rmu_co8327751.1_g000001 Rmu_sc0000003.1_g000001 Rmu_sc0034215.1_g000001 Rmu_sc0034216.1_g000001 Rmu_sc0037577.1_g000004 Rmu_sc0037929.1_g000001 Rmu_ssc0000034.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271270
rosa_rugosa	Rorug06G0447100
rosa_samantha	Rh7AG050500 Rh7BG050300 Rh7CG051800 Rh7CG051900 Rh7DG049600
rosa_wichuraiana	Rw7G004130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	665
Acc16I	TGCGCA	1 cut(s)	509
AccB1I	GGYRCC	1 cut(s)	1602
AccB7I	CCANNNNNTGG	1 cut(s)	1079
AccBSI	CCGCTC	1 cut(s)	192
AccI	GTMKAC	2 cut(s)	1051, 1069
AciI	CCGC	5 cut(s)	190, 1543, 1588, 1619, 1637
AclI	AACGTT	1 cut(s)	521
AclWI	GGATC	3 cut(s)	335, 468, 940
AcoI	YGGCCR	1 cut(s)	1034
AcsI	RAATTY	4 cut(s)	136, 484, 696, 1039
AcuI	CTGAAG	2 cut(s)	723, 1038
AfaI	GTAC	1 cut(s)	1117
AfiI	CCNNNNNNNGG	2 cut(s)	371, 1079
AflII	CTTAAG	1 cut(s)	598
AflIII	ACRYGT	1 cut(s)	1332
AgsI	TTSAA	6 cut(s)	161, 177, 201, 490, 801, 1220
AjnI	CCWGG	5 cut(s)	370, 587, 1054, 1072, 1503
AluBI	AGCT	8 cut(s)	26, 289, 450, 717, 722, 1022, 1234, 1634
AluI	AGCT	8 cut(s)	26, 289, 450, 717, 722, 1022, 1234, 1634
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	8 cut(s)	46, 433, 674, 1146, 1256, 1302, 1309, 1518
AlwI	GGATC	3 cut(s)	335, 468, 940
AlwNI	CAGNNNCTG	2 cut(s)	626, 1500
Ama87I	CYCGRG	1 cut(s)	661
AoxI	GGCC	5 cut(s)	53, 165, 946, 1034, 1282
ApeKI	GCWGC	4 cut(s)	108, 722, 1585, 1634
ApoI	RAATTY	4 cut(s)	136, 484, 696, 1039
Asp700I	GAANNNNTTC	1 cut(s)	1372
AspLEI	GCGC	1 cut(s)	510
AspS9I	GGNCC	2 cut(s)	53, 947
AsuC2I	CCSGG	2 cut(s)	478, 1138
AsuHPI	GGTGA	5 cut(s)	386, 1644, 1650, 1659, 1668
AsuNHI	GCTAGC	1 cut(s)	1201
AvaI	CYCGRG	1 cut(s)	661
BaeGI	GKGCMC	1 cut(s)	1607
BanI	GGYRCC	1 cut(s)	1602
BbsI	GAAGAC	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	4 cut(s)	120, 709, 1572, 1621
BccI	CCATC	6 cut(s)	26, 430, 1151, 1175, 1663, 1669
BcgI	CGANNNNNNTGC	2 cut(s)	102, 136
BciT130I	CCWGG	5 cut(s)	372, 589, 1056, 1074, 1505
BclI	TGATCA	1 cut(s)	1297
BcnI	CCSGG	2 cut(s)	478, 1138
BcoDI	GTCTC	8 cut(s)	46, 433, 674, 1146, 1256, 1302, 1309, 1518
BfaI	CTAG	9 cut(s)	27, 45, 57, 231, 420, 579, 888, 993, 1202
BfmI	CTRYAG	4 cut(s)	106, 939, 1119, 1629
BfrI	CTTAAG	1 cut(s)	598
BisI	GCNGC	6 cut(s)	109, 723, 1586, 1620, 1635, 1638
BlpI	GCTNAGC	1 cut(s)	718
BlsI	GCNGC	6 cut(s)	110, 724, 1587, 1621, 1636, 1639
Bme1390I	CCNGG	7 cut(s)	372, 478, 589, 1056, 1074, 1138, 1505
BmeT110I	CYCGRG	1 cut(s)	661
BmgT120I	GGNCC	2 cut(s)	53, 947
BmiI	GGNNCC	2 cut(s)	54, 1604
BmrFI	CCNGG	7 cut(s)	372, 478, 589, 1056, 1074, 1138, 1505
BmrI	ACTGGG	1 cut(s)	125
BmsI	GCATC	5 cut(s)	110, 1095, 1437, 1444, 1466
BmtI	GCTAGC	1 cut(s)	1205
BmuI	ACTGGG	1 cut(s)	125
BpiI	GAAGAC	1 cut(s)	136
BplI	GAGNNNNNCTC	2 cut(s)	61, 93
BpmI	CTGGAG	4 cut(s)	751, 1229, 1431, 1542
Bpu10I	CCTNAGC	2 cut(s)	99, 726
Bpu1102I	GCTNAGC	1 cut(s)	718
BpuEI	CTTGAG	2 cut(s)	241, 1280
BpuMI	CCSGG	2 cut(s)	478, 1138
Bsa29I	ATCGAT	2 cut(s)	978, 1326
BsaBI	GATNNNNATC	1 cut(s)	974
BsaI	GGTCTC	3 cut(s)	674, 1146, 1256
BsaJI	CCNNGG	1 cut(s)	778
BsaWI	WCCGGW	2 cut(s)	14, 266
BsaXI	ACNNNNNCTCC	2 cut(s)	1515, 1545
Bsc4I	CCNNNNNNNGG	2 cut(s)	371, 1079
Bse1I	ACTGG	7 cut(s)	120, 505, 642, 768, 877, 1212, 1323
Bse3DI	GCAATG	2 cut(s)	934, 1388
Bse8I	GATNNNNATC	1 cut(s)	974
BseBI	CCWGG	5 cut(s)	372, 589, 1056, 1074, 1505
BseCI	ATCGAT	2 cut(s)	978, 1326
BseDI	CCNNGG	1 cut(s)	778
BseGI	GGATG	8 cut(s)	10, 125, 343, 1162, 1186, 1457, 1459, 1486
BseJI	GATNNNNATC	1 cut(s)	974
BseLI	CCNNNNNNNGG	2 cut(s)	371, 1079
BseMI	GCAATG	2 cut(s)	934, 1388
BseMII	CTCAG	3 cut(s)	113, 732, 957
BseNI	ACTGG	7 cut(s)	120, 505, 642, 768, 877, 1212, 1323
BseRI	GAGGAG	1 cut(s)	354
BseSI	GKGCMC	1 cut(s)	1607
BseXI	GCAGC	4 cut(s)	120, 709, 1572, 1621
BshFI	GGCC	5 cut(s)	55, 167, 948, 1036, 1284
BshNI	GGYRCC	1 cut(s)	1602
BshVI	ATCGAT	2 cut(s)	978, 1326
BsiHKAI	GWGCWC	1 cut(s)	154
BsiHKCI	CYCGRG	1 cut(s)	661
BsiSI	CCGG	4 cut(s)	15, 267, 478, 1138
BslFI	GGGAC	1 cut(s)	943
BslI	CCNNNNNNNGG	2 cut(s)	371, 1079
BsmAI	GTCTC	8 cut(s)	46, 433, 674, 1146, 1256, 1302, 1309, 1518
BsmBI	CGTCTC	1 cut(s)	1518
BsmFI	GGGAC	1 cut(s)	943
BsmI	GAATGC	1 cut(s)	185
BsnI	GGCC	5 cut(s)	55, 167, 948, 1036, 1284
Bso31I	GGTCTC	3 cut(s)	674, 1146, 1256
BsoBI	CYCGRG	1 cut(s)	661
Bsp1286I	GDGCHC	2 cut(s)	154, 1607
Bsp143I	GATC	7 cut(s)	88, 340, 473, 575, 932, 1109, 1297
Bsp1720I	GCTNAGC	1 cut(s)	718
Bsp19I	CCATGG	1 cut(s)	778
BspACI	CCGC	5 cut(s)	190, 1543, 1588, 1619, 1637
BspANI	GGCC	5 cut(s)	55, 167, 948, 1036, 1284
BspCNI	CTCAG	3 cut(s)	112, 731, 958
BspDI	ATCGAT	2 cut(s)	978, 1326
BspLI	GGNNCC	2 cut(s)	54, 1604
BspMAI	CTGCAG	3 cut(s)	110, 943, 1123
BspOI	GCTAGC	1 cut(s)	1205
BspPI	GGATC	3 cut(s)	335, 468, 940
BspQI	GCTCTTC	2 cut(s)	199, 1224
BspT107I	GGYRCC	1 cut(s)	1602
BspTI	CTTAAG	1 cut(s)	598
BspTNI	GGTCTC	3 cut(s)	674, 1146, 1256
BsrBI	CCGCTC	1 cut(s)	192
BsrDI	GCAATG	2 cut(s)	934, 1388
BsrI	ACTGG	7 cut(s)	120, 505, 642, 768, 877, 1212, 1323
BssECI	CCNNGG	1 cut(s)	778
BssMI	GATC	7 cut(s)	88, 340, 473, 575, 932, 1109, 1297
BssT1I	CCWWGG	1 cut(s)	778
Bst2UI	CCWGG	5 cut(s)	372, 589, 1056, 1074, 1505
Bst4CI	ACNGT	1 cut(s)	868
Bst6I	CTCTTC	4 cut(s)	199, 799, 1224, 1356
BstAFI	CTTAAG	1 cut(s)	598
BstAPI	GCANNNNNTGC	1 cut(s)	1500
BstC8I	GCNNGC	2 cut(s)	183, 1203
BstDEI	CTNAG	5 cut(s)	99, 608, 718, 726, 966
BstDSI	CCRYGG	1 cut(s)	778
BstF5I	GGATG	8 cut(s)	10, 125, 343, 1162, 1186, 1457, 1459, 1486
BstHHI	GCGC	1 cut(s)	510
BstKTI	GATC	7 cut(s)	91, 343, 476, 578, 935, 1112, 1300
BstMAI	GTCTC	8 cut(s)	46, 433, 674, 1146, 1256, 1302, 1309, 1518
BstMBI	GATC	7 cut(s)	88, 340, 473, 575, 932, 1109, 1297
BstMWI	GCNNNNNNNGC	5 cut(s)	1500, 1549, 1611, 1625, 1634
BstNI	CCWGG	5 cut(s)	372, 589, 1056, 1074, 1505
BstNSI	RCATGY	1 cut(s)	1336
BstSCI	CCNGG	7 cut(s)	370, 476, 587, 1054, 1072, 1136, 1503
BstSFI	CTRYAG	4 cut(s)	106, 939, 1119, 1629
BstSLI	GKGCMC	1 cut(s)	1607
BstV1I	GCAGC	4 cut(s)	120, 709, 1572, 1621
BstV2I	GAAGAC	1 cut(s)	136
BstX2I	RGATCY	2 cut(s)	473, 932
BstYI	RGATCY	2 cut(s)	473, 932
Bsu15I	ATCGAT	2 cut(s)	978, 1326
BsuRI	GGCC	5 cut(s)	55, 167, 948, 1036, 1284
BsuTUI	ATCGAT	2 cut(s)	978, 1326
BtgI	CCRYGG	1 cut(s)	778
BtsCI	GGATG	8 cut(s)	10, 125, 343, 1162, 1186, 1457, 1459, 1486
BtsI	GCAGTG	4 cut(s)	130, 334, 1090, 1629
BtsIMutI	CAGTG	6 cut(s)	130, 334, 1090, 1205, 1403, 1629
Cac8I	GCNNGC	2 cut(s)	183, 1203
CaiI	CAGNNNCTG	2 cut(s)	626, 1500
CfoI	GCGC	1 cut(s)	510
Cfr13I	GGNCC	2 cut(s)	53, 947
ClaI	ATCGAT	2 cut(s)	978, 1326
CseI	GACGC	3 cut(s)	655, 834, 1176
CsiI	ACCWGGT	2 cut(s)	1054, 1072
Csp6I	GTAC	1 cut(s)	1116
CviAII	CATG	6 cut(s)	779, 1097, 1102, 1177, 1312, 1333
CviQI	GTAC	1 cut(s)	1116
DdeI	CTNAG	5 cut(s)	99, 608, 718, 726, 966
DpnI	GATC	7 cut(s)	90, 342, 475, 577, 934, 1111, 1299
DpnII	GATC	7 cut(s)	88, 340, 473, 575, 932, 1109, 1297
DraI	TTTAAA	1 cut(s)	1029
DrdI	GACNNNNNNGTC	1 cut(s)	665
DseDI	GACNNNNNNGTC	1 cut(s)	665
EaeI	YGGCCR	1 cut(s)	1034
Eam1104I	CTCTTC	4 cut(s)	199, 799, 1224, 1356
EarI	CTCTTC	4 cut(s)	199, 799, 1224, 1356
Eco130I	CCWWGG	1 cut(s)	778
Eco31I	GGTCTC	3 cut(s)	674, 1146, 1256
Eco32I	GATATC	1 cut(s)	1324
Eco57I	CTGAAG	2 cut(s)	723, 1038
Eco88I	CYCGRG	1 cut(s)	661
EcoO109I	RGGNCCY	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	136
EcoRII	CCWGG	5 cut(s)	370, 587, 1054, 1072, 1503
EcoRV	GATATC	1 cut(s)	1324
EcoT14I	CCWWGG	1 cut(s)	778
EcoT22I	ATGCAT	1 cut(s)	1459
ErhI	CCWWGG	1 cut(s)	778
Esp3I	CGTCTC	1 cut(s)	1518
FaeI	CATG	6 cut(s)	782, 1100, 1105, 1180, 1315, 1336
FaqI	GGGAC	1 cut(s)	943
FatI	CATG	6 cut(s)	778, 1096, 1101, 1176, 1311, 1332
FauI	CCCGC	1 cut(s)	1581
FauNDI	CATATG	2 cut(s)	954, 1339
FbaI	TGATCA	1 cut(s)	1297
FblI	GTMKAC	2 cut(s)	1051, 1069
Fnu4HI	GCNGC	6 cut(s)	109, 723, 1586, 1620, 1635, 1638
FokI	GGATG	8 cut(s)	17, 132, 350, 1169, 1193, 1444, 1466, 1493
Fsp4HI	GCNGC	6 cut(s)	109, 723, 1586, 1620, 1635, 1638
FspBI	CTAG	9 cut(s)	27, 45, 57, 231, 420, 579, 888, 993, 1202
FspI	TGCGCA	1 cut(s)	509
GlaI	GCGC	1 cut(s)	509
GluI	GCNGC	6 cut(s)	109, 723, 1586, 1620, 1635, 1638
GsuI	CTGGAG	4 cut(s)	751, 1229, 1431, 1542
HaeIII	GGCC	5 cut(s)	55, 167, 948, 1036, 1284
HapII	CCGG	4 cut(s)	15, 267, 478, 1138
HgaI	GACGC	3 cut(s)	655, 834, 1176
HhaI	GCGC	1 cut(s)	510
Hin1II	CATG	6 cut(s)	782, 1100, 1105, 1180, 1315, 1336
Hin6I	GCGC	1 cut(s)	508
HinP1I	GCGC	1 cut(s)	508
HincII	GTYRAC	1 cut(s)	670
HindII	GTYRAC	1 cut(s)	670
HinfI	GANTC	9 cut(s)	311, 379, 401, 416, 659, 783, 797, 856, 1150
HpaII	CCGG	4 cut(s)	15, 267, 478, 1138
HphI	GGTGA	5 cut(s)	386, 1644, 1650, 1659, 1668
Hpy166II	GTNNAC	4 cut(s)	670, 1052, 1070, 1094
Hpy188III	TCNNGA	9 cut(s)	45, 258, 335, 344, 801, 1154, 1259, 1276, 1448
Hpy8I	GTNNAC	4 cut(s)	670, 1052, 1070, 1094
Hpy99I	CGWCG	1 cut(s)	1170
HpyAV	CCTTC	1 cut(s)	698
HpyCH4III	ACNGT	1 cut(s)	868
HpyCH4IV	ACGT	1 cut(s)	521
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1500, 1549, 1611, 1625, 1634
HpyF3I	CTNAG	5 cut(s)	99, 608, 718, 726, 966
HpySE526I	ACGT	1 cut(s)	521
Hsp92II	CATG	6 cut(s)	782, 1100, 1105, 1180, 1315, 1336
HspAI	GCGC	1 cut(s)	508
Ksp22I	TGATCA	1 cut(s)	1297
Kzo9I	GATC	7 cut(s)	88, 340, 473, 575, 932, 1109, 1297
LguI	GCTCTTC	2 cut(s)	199, 1224
LmnI	GCTCC	2 cut(s)	455, 1027
Lsp1109I	GCAGC	4 cut(s)	120, 709, 1572, 1621
LweI	GCATC	5 cut(s)	110, 1095, 1437, 1444, 1466
MabI	ACCWGGT	2 cut(s)	1054, 1072
MaeI	CTAG	9 cut(s)	27, 45, 57, 231, 420, 579, 888, 993, 1202
MaeII	ACGT	1 cut(s)	521
MaeIII	GTNAC	3 cut(s)	358, 868, 875
MalI	GATC	7 cut(s)	90, 342, 475, 577, 934, 1111, 1299
MbiI	CCGCTC	1 cut(s)	192
MboI	GATC	7 cut(s)	88, 340, 473, 575, 932, 1109, 1297
MfeI	CAATTG	1 cut(s)	789
MflI	RGATCY	2 cut(s)	473, 932
MhlI	GDGCHC	2 cut(s)	154, 1607
MlyI	GAGTC	3 cut(s)	425, 653, 850
MmeI	TCCRAC	2 cut(s)	199, 424
Mph1103I	ATGCAT	1 cut(s)	1459
MroXI	GAANNNNTTC	1 cut(s)	1372
MseI	TTAA	4 cut(s)	599, 1028, 1419, 1593
MspA1I	CMGCKG	2 cut(s)	722, 1634
MspCI	CTTAAG	1 cut(s)	598
MspI	CCGG	4 cut(s)	15, 267, 478, 1138
MspR9I	CCNGG	7 cut(s)	372, 478, 589, 1056, 1074, 1138, 1505
MunI	CAATTG	1 cut(s)	789
Mva1269I	GAATGC	1 cut(s)	185
MvaI	CCWGG	5 cut(s)	372, 589, 1056, 1074, 1505
MwoI	GCNNNNNNNGC	5 cut(s)	1500, 1549, 1611, 1625, 1634
NciI	CCSGG	2 cut(s)	478, 1138
NcoI	CCATGG	1 cut(s)	778
NdeI	CATATG	2 cut(s)	954, 1339
NdeII	GATC	7 cut(s)	88, 340, 473, 575, 932, 1109, 1297
NheI	GCTAGC	1 cut(s)	1201
NlaIII	CATG	6 cut(s)	782, 1100, 1105, 1180, 1315, 1336
NlaIV	GGNNCC	2 cut(s)	54, 1604
NmuCI	GTSAC	2 cut(s)	358, 875
NsbI	TGCGCA	1 cut(s)	509
NsiI	ATGCAT	1 cut(s)	1459
NspI	RCATGY	1 cut(s)	1336
PaeR7I	CTCGAG	1 cut(s)	661
PciI	ACATGT	1 cut(s)	1332
PciSI	GCTCTTC	2 cut(s)	199, 1224
PctI	GAATGC	1 cut(s)	185
PdmI	GAANNNNTTC	1 cut(s)	1372
PfeI	GAWTC	6 cut(s)	311, 379, 401, 783, 797, 1150
PflMI	CCANNNNNTGG	1 cut(s)	1079
PfoI	TCCNGGA	1 cut(s)	476
PkrI	GCNGC	6 cut(s)	110, 724, 1587, 1621, 1636, 1639
PleI	GAGTC	3 cut(s)	424, 653, 850
PpsI	GAGTC	3 cut(s)	424, 653, 850
PscI	ACATGT	1 cut(s)	1332
Psp1406I	AACGTT	1 cut(s)	521
Psp6I	CCWGG	5 cut(s)	370, 587, 1054, 1072, 1503
PspGI	CCWGG	5 cut(s)	370, 587, 1054, 1072, 1503
PspN4I	GGNNCC	2 cut(s)	54, 1604
PspPI	GGNCC	2 cut(s)	53, 947
PspXI	VCTCGAGB	1 cut(s)	661
PstI	CTGCAG	3 cut(s)	110, 943, 1123
PstNI	CAGNNNCTG	2 cut(s)	626, 1500
PsuI	RGATCY	2 cut(s)	473, 932
PvuII	CAGCTG	2 cut(s)	722, 1634
RsaI	GTAC	1 cut(s)	1117
RsaNI	GTAC	1 cut(s)	1116
SapI	GCTCTTC	2 cut(s)	199, 1224
SaqAI	TTAA	4 cut(s)	599, 1028, 1419, 1593
SatI	GCNGC	6 cut(s)	109, 723, 1586, 1620, 1635, 1638
Sau3AI	GATC	7 cut(s)	88, 340, 473, 575, 932, 1109, 1297
Sau96I	GGNCC	2 cut(s)	53, 947
SchI	GAGTC	3 cut(s)	425, 653, 850
ScrFI	CCNGG	7 cut(s)	372, 478, 589, 1056, 1074, 1138, 1505
SduI	GDGCHC	2 cut(s)	154, 1607
SexAI	ACCWGGT	2 cut(s)	1054, 1072
SfaNI	GCATC	5 cut(s)	110, 1095, 1437, 1444, 1466
SfcI	CTRYAG	4 cut(s)	106, 939, 1119, 1629
Sfr274I	CTCGAG	1 cut(s)	661
SlaI	CTCGAG	1 cut(s)	661
SmlI	CTYRAG	4 cut(s)	256, 598, 661, 1259
SmoI	CTYRAG	4 cut(s)	256, 598, 661, 1259
SsiI	CCGC	5 cut(s)	190, 1543, 1588, 1619, 1637
SspMI	CTAG	9 cut(s)	27, 45, 57, 231, 420, 579, 888, 993, 1202
StyD4I	CCNGG	7 cut(s)	370, 476, 587, 1054, 1072, 1136, 1503
StyI	CCWWGG	1 cut(s)	778
TaaI	ACNGT	1 cut(s)	868
TaiI	ACGT	1 cut(s)	524
TaqI	TCGA	5 cut(s)	662, 773, 978, 1326, 1685
TauI	GCSGC	2 cut(s)	1622, 1640
TfiI	GAWTC	6 cut(s)	311, 379, 401, 783, 797, 1150
Tru1I	TTAA	4 cut(s)	599, 1028, 1419, 1593
Tru9I	TTAA	4 cut(s)	599, 1028, 1419, 1593
TscAI	CASTG	6 cut(s)	130, 334, 1090, 1212, 1410, 1629
TseFI	GTSAC	2 cut(s)	358, 875
TseI	GCWGC	4 cut(s)	108, 722, 1585, 1634
Tsp45I	GTSAC	2 cut(s)	358, 875
TspDTI	ATGAA	8 cut(s)	303, 639, 755, 987, 998, 1163, 1242, 1497
TspGWI	ACGGA	1 cut(s)	627
TspRI	CASTG	6 cut(s)	130, 334, 1090, 1212, 1410, 1629
Van91I	CCANNNNNTGG	1 cut(s)	1079
Vha464I	CTTAAG	1 cut(s)	598
XapI	RAATTY	4 cut(s)	136, 484, 696, 1039
XbaI	TCTAGA	1 cut(s)	44
XceI	RCATGY	1 cut(s)	1336
XhoI	CTCGAG	1 cut(s)	661
XmiI	GTMKAC	2 cut(s)	1051, 1069
XmnI	GAANNNNTTC	1 cut(s)	1372
XspI	CTAG	9 cut(s)	27, 45, 57, 231, 420, 579, 888, 993, 1202
Zsp2I	ATGCAT	1 cut(s)	1459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.