Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8327751.1

Orthogroup ID

OG0006789

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 721

Gene Structure 721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8327751.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 373 bp

ctgaggcccattgaacaaaagaaattaattggaaagcctttgcaacttcctttgactgttgagttgtgctttctgtgtgaaggcactaaccacgacaatacgggactgctgaagggccgaagcaagcgccgctctacaccttttgatgagattagcaaacccctaccatcaaatgctgtgtggaaaaaggtccacctacgtagtggctatggaaaaaaggagaagcaatacactcagggttacactttgactgatgaacctctctgtaaactctgccaaacaccatgcgagagccccaatgccaaggaacctgaatattttgaagacctgttctgtaatcttgactgttatggagagtaccgtatccgaacta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000228 GO:0000733 GO:0003674 GO:0003676 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0017111 GO:0019219 GO:0019222 GO:0031297 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031593 GO:0031974 GO:0031981 GO:0032392 GO:0033554 GO:0034641 GO:0034645 GO:0036292 GO:0036310 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045005 GO:0045910 GO:0045934 GO:0046483 GO:0048478 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070530 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090329 GO:0097159 GO:0097617 GO:0140030 GO:0140097 GO:1901360 GO:1901363 GO:1901576 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HNH Helicase_C SNF2_N

Protein Analysis

124

Amino Acids

14.3

Weight (kDa)

8.67

Isoelectric Point (pI)

44.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07810
fragaria_vesca	FvH4_5g14341 FvH4_5g14341 FvH4_5g14341 FvH4_5g14341
malus_domestica	MD14G1208200.v1.1
prunus_persica	Prupe.5G200300_v2.0.a1
pyrus_communis	pycom14g17190 pycom14g17200
rosa_chinensis	RchiOBHm_Chr7g0182391
rosa_laevigata	RLG00000005127
rosa_multiflora	Rmu_co8327751.1_g000001 Rmu_sc0000003.1_g000001 Rmu_sc0034215.1_g000001 Rmu_sc0034216.1_g000001 Rmu_sc0037577.1_g000004 Rmu_sc0037929.1_g000001 Rmu_ssc0000034.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271270
rosa_rugosa	Rorug06G0447100
rosa_samantha	Rh7AG050500 Rh7BG050300 Rh7CG051800 Rh7CG051900 Rh7DG049600
rosa_wichuraiana	Rw7G004130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	132
AciI	CCGC	1 cut(s)	130
AcuI	CTGAAG	1 cut(s)	131
AfaI	GTAC	1 cut(s)	359
AgsI	TTSAA	2 cut(s)	14, 323
AoxI	GGCC	2 cut(s)	5, 115
AseI	ATTAAT	1 cut(s)	26
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	3 cut(s)	6, 115, 190
AvaII	GGWCC	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	330
BccI	CCATC	1 cut(s)	175
BfoI	RGCGCY	1 cut(s)	130
BisI	GCNGC	1 cut(s)	130
BlsI	GCNGC	1 cut(s)	131
Bme18I	GGWCC	1 cut(s)	190
BmgT120I	GGNCC	3 cut(s)	6, 115, 190
BmiI	GGNNCC	1 cut(s)	309
BpiI	GAAGAC	1 cut(s)	330
BsaAI	YACGTR	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	303
BseMII	CTCAG	1 cut(s)	248
BshFI	GGCC	2 cut(s)	7, 117
BslFI	GGGAC	1 cut(s)	117
BsmFI	GGGAC	1 cut(s)	117
BsnI	GGCC	2 cut(s)	7, 117
Bsp1286I	GDGCHC	1 cut(s)	296
BspACI	CCGC	1 cut(s)	130
BspANI	GGCC	2 cut(s)	7, 117
BspCNI	CTCAG	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	309
BsrBI	CCGCTC	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	303
BssT1I	CCWWGG	1 cut(s)	303
Bst4CI	ACNGT	3 cut(s)	58, 347, 362
BstBAI	YACGTR	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	2 cut(s)	2, 234
BstH2I	RGCGCY	1 cut(s)	130
BstHHI	GCGC	1 cut(s)	129
BstMWI	GCNNNNNNNGC	1 cut(s)	129
BstSNI	TACGTA	1 cut(s)	200
BstV2I	GAAGAC	1 cut(s)	330
BsuRI	GGCC	2 cut(s)	7, 117
Cac8I	GCNNGC	1 cut(s)	125
CfoI	GCGC	1 cut(s)	129
Cfr13I	GGNCC	3 cut(s)	6, 115, 190
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	1 cut(s)	285
CviJI	RGCY	5 cut(s)	7, 37, 117, 207, 294
CviKI_1	RGCY	5 cut(s)	7, 37, 117, 207, 294
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	2 cut(s)	2, 234
Eco105I	TACGTA	1 cut(s)	200
Eco130I	CCWWGG	1 cut(s)	303
Eco24I	GRGCYC	1 cut(s)	296
Eco47I	GGWCC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	1 cut(s)	288
FaiI	YATR	3 cut(s)	210, 286, 351
FaqI	GGGAC	1 cut(s)	117
FatI	CATG	1 cut(s)	284
Fnu4HI	GCNGC	1 cut(s)	130
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	1 cut(s)	130
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	1 cut(s)	130
HaeII	RGCGCY	1 cut(s)	130
HaeIII	GGCC	2 cut(s)	7, 117
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	1 cut(s)	288
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
Hpy166II	GTNNAC	2 cut(s)	193, 269
Hpy188I	TCNGA	1 cut(s)	368
Hpy188III	TCNNGA	1 cut(s)	341
Hpy8I	GTNNAC	2 cut(s)	193, 269
HpyAV	CCTTC	2 cut(s)	74, 106
HpyCH4III	ACNGT	3 cut(s)	58, 347, 362
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	1 cut(s)	43
HpyF10VI	GCNNNNNNNGC	1 cut(s)	129
HpyF3I	CTNAG	2 cut(s)	2, 234
HpySE526I	ACGT	1 cut(s)	199
Hsp92II	CATG	1 cut(s)	288
HspAI	GCGC	1 cut(s)	127
LpnPI	CCDG	3 cut(s)	221, 324, 341
MaeII	ACGT	1 cut(s)	199
MaeIII	GTNAC	1 cut(s)	239
MbiI	CCGCTC	1 cut(s)	132
MboII	GAAGA	1 cut(s)	335
MhlI	GDGCHC	1 cut(s)	296
MluCI	AATT	2 cut(s)	23, 27
MnlI	CCTC	1 cut(s)	270
MseI	TTAA	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	129
NlaIII	CATG	1 cut(s)	288
NlaIV	GGNNCC	1 cut(s)	309
PkrI	GCNGC	1 cut(s)	131
Ppu21I	YACGTR	1 cut(s)	200
PshBI	ATTAAT	1 cut(s)	26
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	3 cut(s)	6, 115, 190
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
SaqAI	TTAA	1 cut(s)	26
SatI	GCNGC	1 cut(s)	130
Sau96I	GGNCC	3 cut(s)	6, 115, 190
SduI	GDGCHC	1 cut(s)	296
SetI	ASST	7 cut(s)	142, 192, 198, 202, 262, 313, 330
SinI	GGWCC	1 cut(s)	190
SnaBI	TACGTA	1 cut(s)	200
Sse9I	AATT	2 cut(s)	23, 27
SsiI	CCGC	1 cut(s)	130
SspI	AATATT	1 cut(s)	317
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	3 cut(s)	58, 347, 362
TaiI	ACGT	1 cut(s)	202
TasI	AATT	2 cut(s)	23, 27
TauI	GCSGC	1 cut(s)	132
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TspDTI	ATGAA	1 cut(s)	270
VpaK11BI	GGWCC	1 cut(s)	190
VspI	ATTAAT	1 cut(s)	26
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.