SNF2 domain-containing protein helicase domain-containing protein HNH endonuclease domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G07810 |
| fragaria_vesca | FvH4_5g14341 FvH4_5g14341 FvH4_5g14341 FvH4_5g14341 |
| malus_domestica | MD14G1208200.v1.1 |
| prunus_persica | Prupe.5G200300_v2.0.a1 |
| pyrus_communis | pycom14g17190 pycom14g17200 |
| rosa_chinensis | RchiOBHm_Chr7g0182391 |
| rosa_laevigata | RLG00000005127 |
| rosa_multiflora | Rmu_co8327751.1_g000001 Rmu_sc0000003.1_g000001 Rmu_sc0034215.1_g000001 Rmu_sc0034216.1_g000001 Rmu_sc0037577.1_g000004 Rmu_sc0037929.1_g000001 Rmu_ssc0000034.1_g000003 |
| rosa_roxburghii | Rroxscaffold_3G00271270 |
| rosa_rugosa | Rorug06G0447100 |
| rosa_samantha | Rh7AG050500 Rh7BG050300 Rh7CG051800 Rh7CG051900 Rh7DG049600 |
| rosa_wichuraiana | Rw7G004130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 399 |
| AarI | CACCTGC | 1 cut(s) | 651 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2230 |
| Acc36I | ACCTGC | 1 cut(s) | 651 |
| Acc65I | GGTACC | 2 cut(s) | 466, 2594 |
| AccB1I | GGYRCC | 3 cut(s) | 466, 2336, 2594 |
| AccI | GTMKAC | 2 cut(s) | 1974, 3288 |
| AccII | CGCG | 3 cut(s) | 228, 1988, 2972 |
| AccIII | TCCGGA | 1 cut(s) | 921 |
| AciI | CCGC | 5 cut(s) | 56, 2701, 2972, 3269, 3297 |
| AclI | AACGTT | 2 cut(s) | 479, 799 |
| AclWI | GGATC | 7 cut(s) | 998, 1471, 2204, 2519, 3015, 3236, 3279 |
| AcoI | YGGCCR | 2 cut(s) | 878, 2687 |
| AcsI | RAATTY | 6 cut(s) | 1495, 1707, 1715, 2493, 2660, 3099 |
| AcuI | CTGAAG | 6 cut(s) | 321, 686, 896, 1307, 1907, 2142 |
| AdeI | CACNNNGTG | 1 cut(s) | 3335 |
| AflIII | ACRYGT | 1 cut(s) | 1480 |
| AgeI | ACCGGT | 1 cut(s) | 187 |
| AhlI | ACTAGT | 2 cut(s) | 206, 2768 |
| AjnI | CCWGG | 8 cut(s) | 1126, 1212, 2361, 2515, 3072, 3231, 3401, 3535 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 672, 704, 2076, 2108 |
| Alw21I | GWGCWC | 1 cut(s) | 1942 |
| Alw26I | GTCTC | 7 cut(s) | 24, 402, 427, 1644, 1917, 2216, 3479 |
| AlwI | GGATC | 7 cut(s) | 998, 1471, 2204, 2519, 3015, 3236, 3279 |
| Ama87I | CYCGRG | 1 cut(s) | 236 |
| Aor13HI | TCCGGA | 1 cut(s) | 921 |
| ApaI | GGGCCC | 1 cut(s) | 952 |
| ApeKI | GCWGC | 5 cut(s) | 1291, 1871, 3057, 3191, 3362 |
| ApoI | RAATTY | 6 cut(s) | 1495, 1707, 1715, 2493, 2660, 3099 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 983, 1015, 2542, 2574 |
| AsiGI | ACCGGT | 1 cut(s) | 187 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 222, 1075, 1208, 3081 |
| Asp718I | GGTACC | 2 cut(s) | 466, 2594 |
| AspLEI | GCGC | 2 cut(s) | 1988, 2972 |
| AspS9I | GGNCC | 6 cut(s) | 441, 948, 949, 1089, 1505, 3393 |
| AsuC2I | CCSGG | 4 cut(s) | 520, 2214, 2636, 3211 |
| AsuHPI | GGTGA | 4 cut(s) | 613, 1679, 2485, 2882 |
| AsuII | TTCGAA | 2 cut(s) | 989, 2881 |
| AvaI | CYCGRG | 1 cut(s) | 236 |
| AvaII | GGWCC | 2 cut(s) | 441, 3393 |
| BaeGI | GKGCMC | 1 cut(s) | 952 |
| BalI | TGGCCA | 1 cut(s) | 880 |
| BanI | GGYRCC | 3 cut(s) | 466, 2336, 2594 |
| BanII | GRGCYC | 1 cut(s) | 952 |
| BauI | CACGAG | 1 cut(s) | 1458 |
| BbsI | GAAGAC | 4 cut(s) | 1288, 2084, 2322, 3042 |
| Bbv12I | GWGCWC | 1 cut(s) | 1942 |
| BbvCI | CCTCAGC | 1 cut(s) | 1929 |
| BbvI | GCAGC | 5 cut(s) | 1303, 1883, 3069, 3178, 3374 |
| BceAI | ACGGC | 1 cut(s) | 2702 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 272, 306, 3341, 3375 |
| BciT130I | CCWGG | 8 cut(s) | 1128, 1214, 2363, 2517, 3074, 3233, 3403, 3537 |
| BciVI | GTATCC | 3 cut(s) | 1205, 1987, 2969 |
| BcnI | CCSGG | 4 cut(s) | 520, 2214, 2636, 3211 |
| BcoDI | GTCTC | 7 cut(s) | 24, 402, 427, 1644, 1917, 2216, 3479 |
| BcuI | ACTAGT | 2 cut(s) | 206, 2768 |
| BfaI | CTAG | 5 cut(s) | 207, 935, 1809, 2769, 3314 |
| BfmI | CTRYAG | 3 cut(s) | 1413, 2175, 3360 |
| BfuAI | ACCTGC | 1 cut(s) | 651 |
| BfuI | GTATCC | 3 cut(s) | 1205, 1987, 2969 |
| BglII | AGATCT | 2 cut(s) | 240, 3457 |
| BisI | GCNGC | 5 cut(s) | 1292, 1872, 3058, 3192, 3363 |
| BlsI | GCNGC | 5 cut(s) | 1293, 1873, 3059, 3193, 3364 |
| BmcAI | AGTACT | 2 cut(s) | 205, 2767 |
| Bme18I | GGWCC | 2 cut(s) | 441, 3393 |
| BmeT110I | CYCGRG | 1 cut(s) | 236 |
| BmgT120I | GGNCC | 6 cut(s) | 441, 948, 949, 1089, 1505, 3393 |
| BmiI | GGNNCC | 6 cut(s) | 468, 742, 950, 2311, 2338, 2596 |
| BmsI | GCATC | 6 cut(s) | 284, 334, 897, 925, 2111, 3565 |
| BpiI | GAAGAC | 4 cut(s) | 1288, 2084, 2322, 3042 |
| BpmI | CTGGAG | 4 cut(s) | 1262, 1866, 2762, 3180 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1929, 2792 |
| Bpu14I | TTCGAA | 2 cut(s) | 989, 2881 |
| BpuEI | CTTGAG | 2 cut(s) | 147, 2234 |
| BpuMI | CCSGG | 4 cut(s) | 520, 2214, 2636, 3211 |
| BsaI | GGTCTC | 1 cut(s) | 427 |
| BsaJI | CCNNGG | 9 cut(s) | 470, 590, 1198, 1224, 2361, 2516, 2534, 3231, 3292 |
| BsaWI | WCCGGW | 3 cut(s) | 187, 921, 3042 |
| Bse118I | RCCGGY | 4 cut(s) | 187, 271, 719, 3309 |
| Bse1I | ACTGG | 7 cut(s) | 1245, 1863, 2433, 2491, 2745, 3165, 3284 |
| Bse3DI | GCAATG | 5 cut(s) | 669, 714, 1377, 1563, 1763 |
| BseAI | TCCGGA | 1 cut(s) | 921 |
| BseBI | CCWGG | 8 cut(s) | 1128, 1214, 2363, 2517, 3074, 3233, 3403, 3537 |
| BseDI | CCNNGG | 9 cut(s) | 470, 590, 1198, 1224, 2361, 2516, 2534, 3231, 3292 |
| BseGI | GGATG | 5 cut(s) | 434, 1411, 1603, 1708, 2635 |
| BseMI | GCAATG | 5 cut(s) | 669, 714, 1377, 1563, 1763 |
| BseMII | CTCAG | 9 cut(s) | 518, 1002, 1920, 2211, 2453, 2747, 2820, 2985, 3448 |
| BseNI | ACTGG | 7 cut(s) | 1245, 1863, 2433, 2491, 2745, 3165, 3284 |
| BseRI | GAGGAG | 4 cut(s) | 572, 1863, 2112, 2579 |
| BseSI | GKGCMC | 1 cut(s) | 952 |
| BseXI | GCAGC | 5 cut(s) | 1303, 1883, 3069, 3178, 3374 |
| BseYI | CCCAGC | 2 cut(s) | 389, 1135 |
| BsgI | GTGCAG | 2 cut(s) | 1983, 3393 |
| Bsh1236I | CGCG | 3 cut(s) | 228, 1988, 2972 |
| BshNI | GGYRCC | 3 cut(s) | 466, 2336, 2594 |
| BshTI | ACCGGT | 1 cut(s) | 187 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1942 |
| BsiHKCI | CYCGRG | 1 cut(s) | 236 |
| BslFI | GGGAC | 1 cut(s) | 1771 |
| BsmAI | GTCTC | 7 cut(s) | 24, 402, 427, 1644, 1917, 2216, 3479 |
| BsmBI | CGTCTC | 2 cut(s) | 24, 1917 |
| BsmFI | GGGAC | 1 cut(s) | 1771 |
| BsmI | GAATGC | 3 cut(s) | 610, 2511, 2838 |
| Bso31I | GGTCTC | 1 cut(s) | 427 |
| BsoBI | CYCGRG | 1 cut(s) | 236 |
| Bsp119I | TTCGAA | 2 cut(s) | 989, 2881 |
| Bsp120I | GGGCCC | 1 cut(s) | 948 |
| Bsp1286I | GDGCHC | 2 cut(s) | 952, 1942 |
| Bsp13I | TCCGGA | 1 cut(s) | 921 |
| Bsp1407I | TGTACA | 1 cut(s) | 1789 |
| BspACI | CCGC | 5 cut(s) | 56, 2701, 2972, 3269, 3297 |
| BspCNI | CTCAG | 9 cut(s) | 517, 1003, 1921, 2212, 2454, 2748, 2821, 2986, 3447 |
| BspEI | TCCGGA | 1 cut(s) | 921 |
| BspFNI | CGCG | 3 cut(s) | 228, 1988, 2972 |
| BspHI | TCATGA | 1 cut(s) | 3571 |
| BspLI | GGNNCC | 6 cut(s) | 468, 742, 950, 2311, 2338, 2596 |
| BspMAI | CTGCAG | 1 cut(s) | 3364 |
| BspMI | ACCTGC | 1 cut(s) | 651 |
| BspPI | GGATC | 7 cut(s) | 998, 1471, 2204, 2519, 3015, 3236, 3279 |
| BspQI | GCTCTTC | 1 cut(s) | 9 |
| BspT104I | TTCGAA | 2 cut(s) | 989, 2881 |
| BspT107I | GGYRCC | 3 cut(s) | 466, 2336, 2594 |
| BspTNI | GGTCTC | 1 cut(s) | 427 |
| BsrDI | GCAATG | 5 cut(s) | 669, 714, 1377, 1563, 1763 |
| BsrFI | RCCGGY | 4 cut(s) | 187, 271, 719, 3309 |
| BsrGI | TGTACA | 1 cut(s) | 1789 |
| BsrI | ACTGG | 7 cut(s) | 1245, 1863, 2433, 2491, 2745, 3165, 3284 |
| BssAI | RCCGGY | 4 cut(s) | 187, 271, 719, 3309 |
| BssECI | CCNNGG | 9 cut(s) | 470, 590, 1198, 1224, 2361, 2516, 2534, 3231, 3292 |
| BssNAI | GTATAC | 1 cut(s) | 1975 |
| BssSI | CACGAG | 1 cut(s) | 1458 |
| BssT1I | CCWWGG | 6 cut(s) | 470, 590, 1198, 1224, 2534, 3292 |
| Bst1107I | GTATAC | 1 cut(s) | 1975 |
| Bst2BI | CACGAG | 1 cut(s) | 1458 |
| Bst2UI | CCWGG | 8 cut(s) | 1128, 1214, 2363, 2517, 3074, 3233, 3403, 3537 |
| Bst6I | CTCTTC | 3 cut(s) | 9, 22, 3501 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 3111, 3266 |
| BstAUI | TGTACA | 1 cut(s) | 1789 |
| BstBI | TTCGAA | 2 cut(s) | 989, 2881 |
| BstC8I | GCNNGC | 7 cut(s) | 2118, 2578, 3024, 3028, 3267, 3311, 3343 |
| BstEII | GGTNACC | 1 cut(s) | 2888 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 165 |
| BstF5I | GGATG | 5 cut(s) | 434, 1411, 1603, 1708, 2635 |
| BstFNI | CGCG | 3 cut(s) | 228, 1988, 2972 |
| BstHHI | GCGC | 2 cut(s) | 1988, 2972 |
| BstMAI | GTCTC | 7 cut(s) | 24, 402, 427, 1644, 1917, 2216, 3479 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1132, 3111, 3266, 3347, 3371 |
| BstNI | CCWGG | 8 cut(s) | 1128, 1214, 2363, 2517, 3074, 3233, 3403, 3537 |
| BstNSI | RCATGY | 4 cut(s) | 1120, 1484, 3030, 3269 |
| BstPI | GGTNACC | 1 cut(s) | 2888 |
| BstSFI | CTRYAG | 3 cut(s) | 1413, 2175, 3360 |
| BstSLI | GKGCMC | 1 cut(s) | 952 |
| BstUI | CGCG | 3 cut(s) | 228, 1988, 2972 |
| BstV1I | GCAGC | 5 cut(s) | 1303, 1883, 3069, 3178, 3374 |
| BstV2I | GAAGAC | 4 cut(s) | 1288, 2084, 2322, 3042 |
| BstX2I | RGATCY | 5 cut(s) | 240, 1003, 2524, 3007, 3457 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 629, 2486 |
| BstYI | RGATCY | 5 cut(s) | 240, 1003, 2524, 3007, 3457 |
| BstZ17I | GTATAC | 1 cut(s) | 1975 |
| BsuI | GTATCC | 3 cut(s) | 1205, 1987, 2969 |
| BtgZI | GCGATG | 1 cut(s) | 694 |
| BtsCI | GGATG | 5 cut(s) | 434, 1411, 1603, 1708, 2635 |
| BtsI | GCAGTG | 3 cut(s) | 2137, 2865, 3357 |
| BtsIMutI | CAGTG | 8 cut(s) | 1275, 2055, 2137, 2484, 2738, 2865, 3158, 3357 |
| BveI | ACCTGC | 1 cut(s) | 651 |
| Cac8I | GCNNGC | 7 cut(s) | 2118, 2578, 3024, 3028, 3267, 3311, 3343 |
| CciI | TCATGA | 1 cut(s) | 3571 |
| CfoI | GCGC | 2 cut(s) | 1988, 2972 |
| Cfr10I | RCCGGY | 4 cut(s) | 187, 271, 719, 3309 |
| Cfr13I | GGNCC | 6 cut(s) | 441, 948, 949, 1089, 1505, 3393 |
| CseI | GACGC | 2 cut(s) | 217, 706 |
| CspAI | ACCGGT | 1 cut(s) | 187 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 870, 905 |
| DraI | TTTAAA | 1 cut(s) | 3426 |
| DraIII | CACNNNGTG | 1 cut(s) | 3335 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2230 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2230 |
| EaeI | YGGCCR | 2 cut(s) | 878, 2687 |
| Eam1104I | CTCTTC | 3 cut(s) | 9, 22, 3501 |
| EarI | CTCTTC | 3 cut(s) | 9, 22, 3501 |
| EciI | GGCGGA | 1 cut(s) | 3312 |
| Eco130I | CCWWGG | 6 cut(s) | 470, 590, 1198, 1224, 2534, 3292 |
| Eco147I | AGGCCT | 2 cut(s) | 2539, 3151 |
| Eco24I | GRGCYC | 1 cut(s) | 952 |
| Eco31I | GGTCTC | 1 cut(s) | 427 |
| Eco47I | GGWCC | 2 cut(s) | 441, 3393 |
| Eco57I | CTGAAG | 6 cut(s) | 321, 686, 896, 1307, 1907, 2142 |
| Eco88I | CYCGRG | 1 cut(s) | 236 |
| Eco91I | GGTNACC | 1 cut(s) | 2888 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 165 |
| EcoO109I | RGGNCCY | 2 cut(s) | 949, 1089 |
| EcoO65I | GGTNACC | 1 cut(s) | 2888 |
| EcoRI | GAATTC | 3 cut(s) | 1495, 1707, 2493 |
| EcoRII | CCWGG | 8 cut(s) | 1126, 1212, 2361, 2515, 3072, 3231, 3401, 3535 |
| EcoT14I | CCWWGG | 6 cut(s) | 470, 590, 1198, 1224, 2534, 3292 |
| EcoT22I | ATGCAT | 1 cut(s) | 3262 |
| EcoT38I | GRGCYC | 1 cut(s) | 952 |
| ErhI | CCWWGG | 6 cut(s) | 470, 590, 1198, 1224, 2534, 3292 |
| Esp3I | CGTCTC | 2 cut(s) | 24, 1917 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 300, 332, 1167, 1199 |
| FaqI | GGGAC | 1 cut(s) | 1771 |
| FauI | CCCGC | 1 cut(s) | 2965 |
| FblI | GTMKAC | 2 cut(s) | 1974, 3288 |
| Fnu4HI | GCNGC | 5 cut(s) | 1292, 1872, 3058, 3192, 3363 |
| FokI | GGATG | 5 cut(s) | 441, 1418, 1590, 1715, 2642 |
| FriOI | GRGCYC | 1 cut(s) | 952 |
| Fsp4HI | GCNGC | 5 cut(s) | 1292, 1872, 3058, 3192, 3363 |
| FspBI | CTAG | 5 cut(s) | 207, 935, 1809, 2769, 3314 |
| GlaI | GCGC | 2 cut(s) | 1987, 2971 |
| GluI | GCNGC | 5 cut(s) | 1292, 1872, 3058, 3192, 3363 |
| GsaI | CCCAGC | 2 cut(s) | 393, 1139 |
| GsuI | CTGGAG | 4 cut(s) | 1262, 1866, 2762, 3180 |
| HgaI | GACGC | 2 cut(s) | 217, 706 |
| HhaI | GCGC | 2 cut(s) | 1988, 2972 |
| Hin6I | GCGC | 2 cut(s) | 1986, 2970 |
| HinP1I | GCGC | 2 cut(s) | 1986, 2970 |
| HincII | GTYRAC | 2 cut(s) | 1302, 2875 |
| HindII | GTYRAC | 2 cut(s) | 1302, 2875 |
| HindIII | AAGCTT | 3 cut(s) | 134, 1571, 2919 |
| HpaI | GTTAAC | 1 cut(s) | 1302 |
| HphI | GGTGA | 4 cut(s) | 613, 1679, 2485, 2882 |
| Hpy166II | GTNNAC | 9 cut(s) | 539, 647, 1302, 1486, 1975, 2875, 2951, 3289, 3383 |
| Hpy8I | GTNNAC | 9 cut(s) | 539, 647, 1302, 1486, 1975, 2875, 2951, 3289, 3383 |
| Hpy99I | CGWCG | 1 cut(s) | 3174 |
| HpyCH4IV | ACGT | 6 cut(s) | 479, 799, 828, 1321, 3172, 3379 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1132, 3111, 3266, 3347, 3371 |
| HpySE526I | ACGT | 6 cut(s) | 479, 799, 828, 1321, 3172, 3379 |
| HspAI | GCGC | 2 cut(s) | 1986, 2970 |
| Kpn2I | TCCGGA | 1 cut(s) | 921 |
| KpnI | GGTACC | 2 cut(s) | 470, 2598 |
| KroI | GCCGGC | 1 cut(s) | 3309 |
| KroNI | GCCGGC | 1 cut(s) | 3311 |
| KspAI | GTTAAC | 1 cut(s) | 1302 |
| LguI | GCTCTTC | 1 cut(s) | 9 |
| LmnI | GCTCC | 3 cut(s) | 2099, 2802, 3199 |
| Lsp1109I | GCAGC | 5 cut(s) | 1303, 1883, 3069, 3178, 3374 |
| LweI | GCATC | 6 cut(s) | 284, 334, 897, 925, 2111, 3565 |
| MaeI | CTAG | 5 cut(s) | 207, 935, 1809, 2769, 3314 |
| MaeII | ACGT | 6 cut(s) | 479, 799, 828, 1321, 3172, 3379 |
| MfeI | CAATTG | 4 cut(s) | 278, 323, 1781, 2270 |
| MflI | RGATCY | 5 cut(s) | 240, 1003, 2524, 3007, 3457 |
| MhlI | GDGCHC | 2 cut(s) | 952, 1942 |
| MlsI | TGGCCA | 1 cut(s) | 880 |
| MluNI | TGGCCA | 1 cut(s) | 880 |
| MlyI | GAGTC | 2 cut(s) | 34, 2015 |
| MmeI | TCCRAC | 3 cut(s) | 646, 1834, 3269 |
| Mox20I | TGGCCA | 1 cut(s) | 880 |
| Mph1103I | ATGCAT | 1 cut(s) | 3262 |
| MroI | TCCGGA | 1 cut(s) | 921 |
| MroNI | GCCGGC | 1 cut(s) | 3309 |
| MroXI | GAANNNNTTC | 4 cut(s) | 222, 1075, 1208, 3081 |
| MscI | TGGCCA | 1 cut(s) | 880 |
| MseI | TTAA | 7 cut(s) | 435, 1047, 1247, 1301, 3146, 3237, 3425 |
| MslI | CAYNNNNRTG | 1 cut(s) | 3351 |
| Msp20I | TGGCCA | 1 cut(s) | 880 |
| MunI | CAATTG | 4 cut(s) | 278, 323, 1781, 2270 |
| Mva1269I | GAATGC | 3 cut(s) | 610, 2511, 2838 |
| MvaI | CCWGG | 8 cut(s) | 1128, 1214, 2363, 2517, 3074, 3233, 3403, 3537 |
| MvnI | CGCG | 3 cut(s) | 228, 1988, 2972 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1132, 3111, 3266, 3347, 3371 |
| NaeI | GCCGGC | 1 cut(s) | 3311 |
| NciI | CCSGG | 4 cut(s) | 520, 2214, 2636, 3211 |
| NgoMIV | GCCGGC | 1 cut(s) | 3309 |
| NlaIV | GGNNCC | 6 cut(s) | 468, 742, 950, 2311, 2338, 2596 |
| NmeAIII | GCCGAG | 1 cut(s) | 3443 |
| NmuCI | GTSAC | 6 cut(s) | 1423, 1434, 2204, 2771, 2888, 3355 |
| NsiI | ATGCAT | 1 cut(s) | 3262 |
| NspI | RCATGY | 4 cut(s) | 1120, 1484, 3030, 3269 |
| NspV | TTCGAA | 2 cut(s) | 989, 2881 |
| PaeI | GCATGC | 2 cut(s) | 3030, 3269 |
| PaeR7I | CTCGAG | 1 cut(s) | 236 |
| PagI | TCATGA | 1 cut(s) | 3571 |
| PaqCI | CACCTGC | 1 cut(s) | 651 |
| PceI | AGGCCT | 2 cut(s) | 2539, 3151 |
| PciI | ACATGT | 1 cut(s) | 1480 |
| PciSI | GCTCTTC | 1 cut(s) | 9 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 147, 834 |
| PctI | GAATGC | 3 cut(s) | 610, 2511, 2838 |
| PdiI | GCCGGC | 1 cut(s) | 3311 |
| PdmI | GAANNNNTTC | 4 cut(s) | 222, 1075, 1208, 3081 |
| PfoI | TCCNGGA | 3 cut(s) | 518, 1212, 2212 |
| PinAI | ACCGGT | 1 cut(s) | 187 |
| PkrI | GCNGC | 5 cut(s) | 1293, 1873, 3059, 3193, 3364 |
| PleI | GAGTC | 2 cut(s) | 34, 2014 |
| PpsI | GAGTC | 2 cut(s) | 34, 2014 |
| PscI | ACATGT | 1 cut(s) | 1480 |
| PsiI | TTATAA | 1 cut(s) | 399 |
| Psp1406I | AACGTT | 2 cut(s) | 479, 799 |
| Psp6I | CCWGG | 8 cut(s) | 1126, 1212, 2361, 2515, 3072, 3231, 3401, 3535 |
| PspEI | GGTNACC | 1 cut(s) | 2888 |
| PspFI | CCCAGC | 2 cut(s) | 389, 1135 |
| PspGI | CCWGG | 8 cut(s) | 1126, 1212, 2361, 2515, 3072, 3231, 3401, 3535 |
| PspN4I | GGNNCC | 6 cut(s) | 468, 742, 950, 2311, 2338, 2596 |
| PspOMI | GGGCCC | 1 cut(s) | 948 |
| PspPI | GGNCC | 6 cut(s) | 441, 948, 949, 1089, 1505, 3393 |
| PstI | CTGCAG | 1 cut(s) | 3364 |
| PsuI | RGATCY | 5 cut(s) | 240, 1003, 2524, 3007, 3457 |
| RseI | CAYNNNNRTG | 1 cut(s) | 3351 |
| SapI | GCTCTTC | 1 cut(s) | 9 |
| SaqAI | TTAA | 7 cut(s) | 435, 1047, 1247, 1301, 3146, 3237, 3425 |
| SatI | GCNGC | 5 cut(s) | 1292, 1872, 3058, 3192, 3363 |
| Sau96I | GGNCC | 6 cut(s) | 441, 948, 949, 1089, 1505, 3393 |
| ScaI | AGTACT | 2 cut(s) | 205, 2767 |
| SchI | GAGTC | 2 cut(s) | 34, 2015 |
| SduI | GDGCHC | 2 cut(s) | 952, 1942 |
| SfaNI | GCATC | 6 cut(s) | 284, 334, 897, 925, 2111, 3565 |
| SfcI | CTRYAG | 3 cut(s) | 1413, 2175, 3360 |
| Sfr274I | CTCGAG | 1 cut(s) | 236 |
| SfuI | TTCGAA | 2 cut(s) | 989, 2881 |
| SinI | GGWCC | 2 cut(s) | 441, 3393 |
| SlaI | CTCGAG | 1 cut(s) | 236 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 3351 |
| SmlI | CTYRAG | 3 cut(s) | 162, 236, 2249 |
| SmoI | CTYRAG | 3 cut(s) | 162, 236, 2249 |
| SpeI | ACTAGT | 2 cut(s) | 206, 2768 |
| SphI | GCATGC | 2 cut(s) | 3030, 3269 |
| SseBI | AGGCCT | 2 cut(s) | 2539, 3151 |
| SsiI | CCGC | 5 cut(s) | 56, 2701, 2972, 3269, 3297 |
| SspI | AATATT | 1 cut(s) | 2280 |
| SspMI | CTAG | 5 cut(s) | 207, 935, 1809, 2769, 3314 |
| StuI | AGGCCT | 2 cut(s) | 2539, 3151 |
| StyI | CCWWGG | 6 cut(s) | 470, 590, 1198, 1224, 2534, 3292 |
| TaiI | ACGT | 6 cut(s) | 482, 802, 831, 1324, 3175, 3382 |
| TaqII | GACCGA | 1 cut(s) | 833 |
| TatI | WGTACW | 4 cut(s) | 203, 1789, 2644, 2765 |
| Tru1I | TTAA | 7 cut(s) | 435, 1047, 1247, 1301, 3146, 3237, 3425 |
| Tru9I | TTAA | 7 cut(s) | 435, 1047, 1247, 1301, 3146, 3237, 3425 |
| TscAI | CASTG | 8 cut(s) | 1275, 2062, 2137, 2491, 2745, 2865, 3165, 3364 |
| TseFI | GTSAC | 6 cut(s) | 1423, 1434, 2204, 2771, 2888, 3355 |
| TseI | GCWGC | 5 cut(s) | 1291, 1871, 3057, 3191, 3362 |
| Tsp45I | GTSAC | 6 cut(s) | 1423, 1434, 2204, 2771, 2888, 3355 |
| TspGWI | ACGGA | 5 cut(s) | 569, 664, 2546, 2642, 3263 |
| TspRI | CASTG | 8 cut(s) | 1275, 2062, 2137, 2491, 2745, 2865, 3165, 3364 |
| VpaK11BI | GGWCC | 2 cut(s) | 441, 3393 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 165 |
| XapI | RAATTY | 6 cut(s) | 1495, 1707, 1715, 2493, 2660, 3099 |
| XceI | RCATGY | 4 cut(s) | 1120, 1484, 3030, 3269 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1457 |
| XhoI | CTCGAG | 1 cut(s) | 236 |
| XmiI | GTMKAC | 2 cut(s) | 1974, 3288 |
| XmnI | GAANNNNTTC | 4 cut(s) | 222, 1075, 1208, 3081 |
| XspI | CTAG | 5 cut(s) | 207, 935, 1809, 2769, 3314 |
| ZrmI | AGTACT | 2 cut(s) | 205, 2767 |
| Zsp2I | ATGCAT | 1 cut(s) | 3262 |