DNA annealing helicase and endonuclease
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G07810 |
| fragaria_vesca | FvH4_5g14341 FvH4_5g14341 FvH4_5g14341 FvH4_5g14341 |
| malus_domestica | MD14G1208200.v1.1 |
| prunus_persica | Prupe.5G200300_v2.0.a1 |
| pyrus_communis | pycom14g17190 pycom14g17200 |
| rosa_chinensis | RchiOBHm_Chr7g0182391 |
| rosa_laevigata | RLG00000005127 |
| rosa_multiflora | Rmu_co8327751.1_g000001 Rmu_sc0000003.1_g000001 Rmu_sc0034215.1_g000001 Rmu_sc0034216.1_g000001 Rmu_sc0037577.1_g000004 Rmu_sc0037929.1_g000001 Rmu_ssc0000034.1_g000003 |
| rosa_roxburghii | Rroxscaffold_3G00271270 |
| rosa_rugosa | Rorug06G0447100 |
| rosa_samantha | Rh7AG050500 Rh7BG050300 Rh7CG051800 Rh7CG051900 Rh7DG049600 |
| rosa_wichuraiana | Rw7G004130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 405 |
| Acc65I | GGTACC | 1 cut(s) | 535 |
| AccB1I | GGYRCC | 1 cut(s) | 535 |
| AccI | GTMKAC | 1 cut(s) | 498 |
| AccIII | TCCGGA | 2 cut(s) | 142, 188 |
| AciI | CCGC | 2 cut(s) | 310, 663 |
| AclWI | GGATC | 4 cut(s) | 101, 173, 180, 186 |
| AcsI | RAATTY | 2 cut(s) | 192, 299 |
| AfaI | GTAC | 4 cut(s) | 419, 537, 987, 994 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 188, 214, 291, 634 |
| AgsI | TTSAA | 5 cut(s) | 95, 124, 290, 433, 467 |
| AleI | CACNNNNGTG | 1 cut(s) | 384 |
| AluBI | AGCT | 6 cut(s) | 159, 409, 592, 631, 770, 1028 |
| AluI | AGCT | 6 cut(s) | 159, 409, 592, 631, 770, 1028 |
| Alw21I | GWGCWC | 1 cut(s) | 161 |
| Alw26I | GTCTC | 1 cut(s) | 142 |
| AlwI | GGATC | 4 cut(s) | 101, 173, 180, 186 |
| Ama87I | CYCGRG | 1 cut(s) | 174 |
| Aor13HI | TCCGGA | 2 cut(s) | 142, 188 |
| AoxI | GGCC | 3 cut(s) | 545, 691, 884 |
| ApeKI | GCWGC | 4 cut(s) | 50, 168, 592, 729 |
| ApoI | RAATTY | 2 cut(s) | 192, 299 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 1069 |
| Asp718I | GGTACC | 1 cut(s) | 535 |
| AspLEI | GCGC | 1 cut(s) | 1059 |
| AspS9I | GGNCC | 2 cut(s) | 145, 691 |
| AsuC2I | CCSGG | 6 cut(s) | 175, 176, 209, 233, 278, 306 |
| AsuHPI | GGTGA | 1 cut(s) | 911 |
| AvaI | CYCGRG | 1 cut(s) | 174 |
| AvaII | GGWCC | 1 cut(s) | 145 |
| BamHI | GGATCC | 1 cut(s) | 178 |
| BanI | GGYRCC | 1 cut(s) | 535 |
| BanII | GRGCYC | 2 cut(s) | 161, 958 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 735, 767 |
| Bbv12I | GWGCWC | 1 cut(s) | 161 |
| BbvI | GCAGC | 4 cut(s) | 62, 155, 579, 716 |
| BccI | CCATC | 2 cut(s) | 367, 846 |
| BceAI | ACGGC | 1 cut(s) | 269 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 55, 89 |
| BcnI | CCSGG | 6 cut(s) | 175, 176, 209, 233, 278, 306 |
| BcoDI | GTCTC | 1 cut(s) | 142 |
| BfaI | CTAG | 4 cut(s) | 842, 888, 941, 1014 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 601 |
| BisI | GCNGC | 4 cut(s) | 51, 169, 593, 730 |
| BlsI | GCNGC | 4 cut(s) | 52, 170, 594, 731 |
| Bme1390I | CCNGG | 6 cut(s) | 175, 176, 209, 233, 278, 306 |
| Bme18I | GGWCC | 1 cut(s) | 145 |
| BmeT110I | CYCGRG | 1 cut(s) | 174 |
| BmgT120I | GGNCC | 2 cut(s) | 145, 691 |
| BmiI | GGNNCC | 2 cut(s) | 180, 537 |
| BmrFI | CCNGG | 6 cut(s) | 175, 176, 209, 233, 278, 306 |
| Bpu10I | CCTNAGC | 1 cut(s) | 55 |
| BpuEI | CTTGAG | 1 cut(s) | 653 |
| BpuMI | CCSGG | 6 cut(s) | 175, 176, 209, 233, 278, 306 |
| Bsa29I | ATCGAT | 1 cut(s) | 43 |
| BsaI | GGTCTC | 1 cut(s) | 142 |
| BsaJI | CCNNGG | 7 cut(s) | 110, 173, 174, 276, 305, 476, 694 |
| BsaWI | WCCGGW | 2 cut(s) | 142, 188 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 319, 349 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 188, 214, 291, 634 |
| Bse3DI | GCAATG | 1 cut(s) | 704 |
| BseAI | TCCGGA | 2 cut(s) | 142, 188 |
| BseCI | ATCGAT | 1 cut(s) | 43 |
| BseDI | CCNNGG | 7 cut(s) | 110, 173, 174, 276, 305, 476, 694 |
| BseGI | GGATG | 3 cut(s) | 359, 568, 834 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 188, 214, 291, 634 |
| BseMI | GCAATG | 1 cut(s) | 704 |
| BseMII | CTCAG | 2 cut(s) | 282, 401 |
| BseXI | GCAGC | 4 cut(s) | 62, 155, 579, 716 |
| BseYI | CCCAGC | 1 cut(s) | 766 |
| BshFI | GGCC | 3 cut(s) | 547, 693, 886 |
| BshNI | GGYRCC | 1 cut(s) | 535 |
| BshVI | ATCGAT | 1 cut(s) | 43 |
| BsiHKAI | GWGCWC | 1 cut(s) | 161 |
| BsiHKCI | CYCGRG | 1 cut(s) | 174 |
| BsiSI | CCGG | 8 cut(s) | 143, 175, 189, 209, 232, 257, 278, 305 |
| BslFI | GGGAC | 2 cut(s) | 961, 1090 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 188, 214, 291, 634 |
| BsmAI | GTCTC | 1 cut(s) | 142 |
| BsmFI | GGGAC | 2 cut(s) | 961, 1090 |
| BsnI | GGCC | 3 cut(s) | 547, 693, 886 |
| Bso31I | GGTCTC | 1 cut(s) | 142 |
| BsoBI | CYCGRG | 1 cut(s) | 174 |
| Bsp1286I | GDGCHC | 2 cut(s) | 161, 958 |
| Bsp13I | TCCGGA | 2 cut(s) | 142, 188 |
| Bsp143I | GATC | 5 cut(s) | 106, 178, 185, 582, 943 |
| BspACI | CCGC | 2 cut(s) | 310, 663 |
| BspANI | GGCC | 3 cut(s) | 547, 693, 886 |
| BspCNI | CTCAG | 2 cut(s) | 281, 402 |
| BspDI | ATCGAT | 1 cut(s) | 43 |
| BspEI | TCCGGA | 2 cut(s) | 142, 188 |
| BspHI | TCATGA | 2 cut(s) | 735, 853 |
| BspLI | GGNNCC | 2 cut(s) | 180, 537 |
| BspPI | GGATC | 4 cut(s) | 101, 173, 180, 186 |
| BspT107I | GGYRCC | 1 cut(s) | 535 |
| BspTNI | GGTCTC | 1 cut(s) | 142 |
| BsrDI | GCAATG | 1 cut(s) | 704 |
| BssECI | CCNNGG | 7 cut(s) | 110, 173, 174, 276, 305, 476, 694 |
| BssMI | GATC | 5 cut(s) | 106, 178, 185, 582, 943 |
| BssT1I | CCWWGG | 1 cut(s) | 476 |
| Bst4CI | ACNGT | 2 cut(s) | 383, 513 |
| Bst6I | CTCTTC | 2 cut(s) | 309, 462 |
| BstC8I | GCNNGC | 7 cut(s) | 30, 254, 545, 711, 727, 828, 938 |
| BstDEI | CTNAG | 3 cut(s) | 55, 268, 410 |
| BstDSI | CCRYGG | 1 cut(s) | 110 |
| BstF5I | GGATG | 3 cut(s) | 359, 568, 834 |
| BstHHI | GCGC | 1 cut(s) | 1059 |
| BstKTI | GATC | 5 cut(s) | 109, 181, 188, 585, 946 |
| BstMAI | GTCTC | 1 cut(s) | 142 |
| BstMBI | GATC | 5 cut(s) | 106, 178, 185, 582, 943 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 56, 165, 453, 601 |
| BstNSI | RCATGY | 2 cut(s) | 729, 940 |
| BstSCI | CCNGG | 6 cut(s) | 173, 174, 207, 231, 276, 304 |
| BstV1I | GCAGC | 4 cut(s) | 62, 155, 579, 716 |
| BstX2I | RGATCY | 2 cut(s) | 178, 185 |
| BstYI | RGATCY | 2 cut(s) | 178, 185 |
| Bsu15I | ATCGAT | 1 cut(s) | 43 |
| BsuRI | GGCC | 3 cut(s) | 547, 693, 886 |
| BsuTUI | ATCGAT | 1 cut(s) | 43 |
| BtgI | CCRYGG | 1 cut(s) | 110 |
| BtsCI | GGATG | 3 cut(s) | 359, 568, 834 |
| BtsIMutI | CAGTG | 1 cut(s) | 388 |
| Cac8I | GCNNGC | 7 cut(s) | 30, 254, 545, 711, 727, 828, 938 |
| CciI | TCATGA | 2 cut(s) | 735, 853 |
| CfoI | GCGC | 1 cut(s) | 1059 |
| Cfr13I | GGNCC | 2 cut(s) | 145, 691 |
| Cfr9I | CCCGGG | 1 cut(s) | 174 |
| ClaI | ATCGAT | 1 cut(s) | 43 |
| Csp6I | GTAC | 4 cut(s) | 418, 536, 986, 993 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 262, 297 |
| CviAII | CATG | 8 cut(s) | 491, 540, 726, 736, 786, 854, 937, 983 |
| CviQI | GTAC | 4 cut(s) | 418, 536, 986, 993 |
| DdeI | CTNAG | 3 cut(s) | 55, 268, 410 |
| DpnI | GATC | 5 cut(s) | 108, 180, 187, 584, 945 |
| DpnII | GATC | 5 cut(s) | 106, 178, 185, 582, 943 |
| DraI | TTTAAA | 2 cut(s) | 298, 876 |
| Eam1104I | CTCTTC | 2 cut(s) | 309, 462 |
| EarI | CTCTTC | 2 cut(s) | 309, 462 |
| EciI | GGCGGA | 1 cut(s) | 678 |
| Ecl136II | GAGCTC | 1 cut(s) | 159 |
| Eco130I | CCWWGG | 1 cut(s) | 476 |
| Eco24I | GRGCYC | 2 cut(s) | 161, 958 |
| Eco31I | GGTCTC | 1 cut(s) | 142 |
| Eco47I | GGWCC | 1 cut(s) | 145 |
| Eco53kI | GAGCTC | 1 cut(s) | 159 |
| Eco88I | CYCGRG | 1 cut(s) | 174 |
| EcoICRI | GAGCTC | 1 cut(s) | 159 |
| EcoT14I | CCWWGG | 1 cut(s) | 476 |
| EcoT38I | GRGCYC | 2 cut(s) | 161, 958 |
| ErhI | CCWWGG | 1 cut(s) | 476 |
| FaeI | CATG | 8 cut(s) | 494, 543, 729, 739, 789, 857, 940, 986 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1017, 1049 |
| FaqI | GGGAC | 2 cut(s) | 961, 1090 |
| FatI | CATG | 8 cut(s) | 490, 539, 725, 735, 785, 853, 936, 982 |
| FauI | CCCGC | 1 cut(s) | 303 |
| FblI | GTMKAC | 1 cut(s) | 498 |
| Fnu4HI | GCNGC | 4 cut(s) | 51, 169, 593, 730 |
| FokI | GGATG | 3 cut(s) | 346, 575, 821 |
| FriOI | GRGCYC | 2 cut(s) | 161, 958 |
| Fsp4HI | GCNGC | 4 cut(s) | 51, 169, 593, 730 |
| FspBI | CTAG | 4 cut(s) | 842, 888, 941, 1014 |
| GlaI | GCGC | 1 cut(s) | 1058 |
| GluI | GCNGC | 4 cut(s) | 51, 169, 593, 730 |
| GsaI | CCCAGC | 1 cut(s) | 770 |
| HaeIII | GGCC | 3 cut(s) | 547, 693, 886 |
| HapII | CCGG | 8 cut(s) | 143, 175, 189, 209, 232, 257, 278, 305 |
| HhaI | GCGC | 1 cut(s) | 1059 |
| Hin1II | CATG | 8 cut(s) | 494, 543, 729, 739, 789, 857, 940, 986 |
| Hin6I | GCGC | 1 cut(s) | 1057 |
| HinP1I | GCGC | 1 cut(s) | 1057 |
| HincII | GTYRAC | 1 cut(s) | 205 |
| HindII | GTYRAC | 1 cut(s) | 205 |
| HinfI | GANTC | 5 cut(s) | 40, 80, 260, 611, 974 |
| HpaI | GTTAAC | 1 cut(s) | 205 |
| HpaII | CCGG | 8 cut(s) | 143, 175, 189, 209, 232, 257, 278, 305 |
| HphI | GGTGA | 1 cut(s) | 911 |
| Hpy166II | GTNNAC | 2 cut(s) | 205, 499 |
| Hpy188I | TCNGA | 3 cut(s) | 156, 698, 1009 |
| Hpy188III | TCNNGA | 9 cut(s) | 143, 189, 430, 586, 736, 854, 947, 961, 1034 |
| Hpy8I | GTNNAC | 2 cut(s) | 205, 499 |
| HpyAV | CCTTC | 2 cut(s) | 737, 1092 |
| HpyCH4III | ACNGT | 2 cut(s) | 383, 513 |
| HpyCH4V | TGCA | 6 cut(s) | 543, 655, 680, 709, 725, 928 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 56, 165, 453, 601 |
| HpyF3I | CTNAG | 3 cut(s) | 55, 268, 410 |
| Hsp92II | CATG | 8 cut(s) | 494, 543, 729, 739, 789, 857, 940, 986 |
| HspAI | GCGC | 1 cut(s) | 1057 |
| Kpn2I | TCCGGA | 2 cut(s) | 142, 188 |
| KpnI | GGTACC | 1 cut(s) | 539 |
| KspAI | GTTAAC | 1 cut(s) | 205 |
| Kzo9I | GATC | 5 cut(s) | 106, 178, 185, 582, 943 |
| LmnI | GCTCC | 1 cut(s) | 444 |
| Lsp1109I | GCAGC | 4 cut(s) | 62, 155, 579, 716 |
| MaeI | CTAG | 4 cut(s) | 842, 888, 941, 1014 |
| MalI | GATC | 5 cut(s) | 108, 180, 187, 584, 945 |
| MboI | GATC | 5 cut(s) | 106, 178, 185, 582, 943 |
| MboII | GAAGA | 6 cut(s) | 26, 83, 326, 479, 806, 1009 |
| MflI | RGATCY | 2 cut(s) | 178, 185 |
| MhlI | GDGCHC | 2 cut(s) | 161, 958 |
| MluCI | AATT | 5 cut(s) | 162, 192, 299, 797, 871 |
| MlyI | GAGTC | 2 cut(s) | 254, 983 |
| MmeI | TCCRAC | 1 cut(s) | 540 |
| MnlI | CCTC | 7 cut(s) | 28, 83, 94, 158, 594, 628, 704 |
| MroI | TCCGGA | 2 cut(s) | 142, 188 |
| MseI | TTAA | 4 cut(s) | 204, 297, 440, 875 |
| MslI | CAYNNNNRTG | 1 cut(s) | 384 |
| MspI | CCGG | 8 cut(s) | 143, 175, 189, 209, 232, 257, 278, 305 |
| MspR9I | CCNGG | 6 cut(s) | 175, 176, 209, 233, 278, 306 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 56, 165, 453, 601 |
| NciI | CCSGG | 6 cut(s) | 175, 176, 209, 233, 278, 306 |
| NdeII | GATC | 5 cut(s) | 106, 178, 185, 582, 943 |
| NlaIII | CATG | 8 cut(s) | 494, 543, 729, 739, 789, 857, 940, 986 |
| NlaIV | GGNNCC | 2 cut(s) | 180, 537 |
| NspI | RCATGY | 2 cut(s) | 729, 940 |
| OliI | CACNNNNGTG | 1 cut(s) | 384 |
| PaeI | GCATGC | 2 cut(s) | 729, 940 |
| PagI | TCATGA | 2 cut(s) | 735, 853 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 260 |
| PfeI | GAWTC | 3 cut(s) | 40, 80, 611 |
| PflFI | GACNNNGTC | 1 cut(s) | 669 |
| PkrI | GCNGC | 4 cut(s) | 52, 170, 594, 731 |
| PleI | GAGTC | 2 cut(s) | 254, 982 |
| PpsI | GAGTC | 2 cut(s) | 254, 982 |
| PsiI | TTATAA | 1 cut(s) | 405 |
| Psp124BI | GAGCTC | 1 cut(s) | 161 |
| PspFI | CCCAGC | 1 cut(s) | 766 |
| PspN4I | GGNNCC | 2 cut(s) | 180, 537 |
| PspPI | GGNCC | 2 cut(s) | 145, 691 |
| PsuI | RGATCY | 2 cut(s) | 178, 185 |
| PsyI | GACNNNGTC | 1 cut(s) | 669 |
| RsaI | GTAC | 4 cut(s) | 419, 537, 987, 994 |
| RsaNI | GTAC | 4 cut(s) | 418, 536, 986, 993 |
| RseI | CAYNNNNRTG | 1 cut(s) | 384 |
| SacI | GAGCTC | 1 cut(s) | 161 |
| SaqAI | TTAA | 4 cut(s) | 204, 297, 440, 875 |
| SatI | GCNGC | 4 cut(s) | 51, 169, 593, 730 |
| Sau3AI | GATC | 5 cut(s) | 106, 178, 185, 582, 943 |
| Sau96I | GGNCC | 2 cut(s) | 145, 691 |
| SchI | GAGTC | 2 cut(s) | 254, 983 |
| ScrFI | CCNGG | 6 cut(s) | 175, 176, 209, 233, 278, 306 |
| SduI | GDGCHC | 2 cut(s) | 161, 958 |
| SinI | GGWCC | 1 cut(s) | 145 |
| SmaI | CCCGGG | 1 cut(s) | 176 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 384 |
| SmlI | CTYRAG | 1 cut(s) | 632 |
| SmoI | CTYRAG | 1 cut(s) | 632 |
| SphI | GCATGC | 2 cut(s) | 729, 940 |
| Sse9I | AATT | 5 cut(s) | 162, 192, 299, 797, 871 |
| SsiI | CCGC | 2 cut(s) | 310, 663 |
| SspMI | CTAG | 4 cut(s) | 842, 888, 941, 1014 |
| SstI | GAGCTC | 1 cut(s) | 161 |
| StyD4I | CCNGG | 6 cut(s) | 173, 174, 207, 231, 276, 304 |
| StyI | CCWWGG | 1 cut(s) | 476 |
| TaaI | ACNGT | 2 cut(s) | 383, 513 |
| TaqI | TCGA | 3 cut(s) | 43, 243, 946 |
| TasI | AATT | 5 cut(s) | 162, 192, 299, 797, 871 |
| TatI | WGTACW | 1 cut(s) | 417 |
| TfiI | GAWTC | 3 cut(s) | 40, 80, 611 |
| Tru1I | TTAA | 4 cut(s) | 204, 297, 440, 875 |
| Tru9I | TTAA | 4 cut(s) | 204, 297, 440, 875 |
| TscAI | CASTG | 1 cut(s) | 388 |
| TseI | GCWGC | 4 cut(s) | 50, 168, 592, 729 |
| TspDTI | ATGAA | 3 cut(s) | 699, 724, 774 |
| TspGWI | ACGGA | 1 cut(s) | 99 |
| TspMI | CCCGGG | 1 cut(s) | 174 |
| TspRI | CASTG | 1 cut(s) | 388 |
| Tth111I | GACNNNGTC | 1 cut(s) | 669 |
| VpaK11BI | GGWCC | 1 cut(s) | 145 |
| XapI | RAATTY | 2 cut(s) | 192, 299 |
| XceI | RCATGY | 2 cut(s) | 729, 940 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 845 |
| XmaI | CCCGGG | 1 cut(s) | 174 |
| XmiI | GTMKAC | 1 cut(s) | 498 |
| XspI | CTAG | 4 cut(s) | 842, 888, 941, 1014 |