Rh7CG051800

DNA annealing helicase and endonuclease

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Forward (+)
3778244 .. 3781084
2841 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG051800.1

Sequence Viewer

Length: 1098 bp
ATGGAAATCACCGAAGAACAGCGAAAGCGAGCAGAGGCGAATCGATTGGCAGCCTTAGCAAAACGCAAAGCCCTCGCCGAATCCTCCAATCTTCAACAACAACACGATCCGTGGTCGCTTTTCAAATGCCAAAAGGTCTCTCCGGACCTCAATCCGAGCTCAATTCGCTGCCCCCGGGATCCAAGATCCGGAATTTCACGGGTTAACCCGGTTGTGGAGAACCAGATGTTCCGGGTCAGGCTCGAAATCTGCTCGCCGGACTCGTTCTCAGCCACCCCGGTTGCCGTTCAAGGGTTTAAATTTCCGGGGCGGGAAGAGTGCGTAAGGAGAATGAGTGATTGCTTGGCTGGTGTAATGCCATCCCACTACACGCAAAATCACAGTGGTGGAAAGGCTGGTGTTTATAAGCTGAGTGAGTACAAAGAAGTCTTGAAATGTTTAAGGAGCAACAAGGGCATTGACATTGAAGAGATACCTTGGACTACTTTCCATGTTGTAGACAGACTTTCACAGTCATATATCACAGGGAAGTGGGTACCATGCAGGCCAGAACACTTGTTGGATGATAAGGTTGATGAGTTGATCGGGAAGCTGCCAAAGAGGCTATTGGATTCACTCTTACCTTTCCAGCTTGAGGGTGTTAGATTTGGTTTGCAAAGGGGCGGACGATGTCTTATTGCAGATGAAATGGGCCTCGGAAAGACATTGCAGGCTATTGCTATTGCATGCTGCTTCATGAGTGAAGGCTCTATACTTGTTGTTTGCCCAGCTATTTTGCGTTATTCATGGGCAGAAGAATTAGAGCATTGGCTTCCTTTTTGTTTGCCTGCTGACATCCATCTAGTTTTTGGTCATGAGAACAATCCTGCTAATTTAAAGAAATGGCCTAGAGTTGTGGTTATTTCTTATACAATGCTTCACCATTTGCAAAAGAGCATGCTAGATCGAGAATGGGCTCTCTTGATTGTTGATGAGTCCCACCATGTACGATGTACGAAGAAAAAATCAGAACCTAGAGAGATAAAAGCTGTTCTTGATGTGGCAAGAAAGGTCAAGCGCATAGTTTTACTATCGGGGACACCTTCTTTGTCAAGGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

365

Amino Acids

41.42

Weight (kDa)

9.05

Isoelectric Point (pI)

51.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNF2-rel_dom PF00176 210 - 361 1.2e-21 SNF2-related domain
ResIII PF04851 220 - 362 2.3e-08 Type III restriction enzyme, res subunit
DEAD PF00270 220 - 362 9e-08 DEAD/DEAH box helicase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 405
Acc65I GGTACC 1 cut(s) 535
AccB1I GGYRCC 1 cut(s) 535
AccI GTMKAC 1 cut(s) 498
AccIII TCCGGA 2 cut(s) 142, 188
AciI CCGC 2 cut(s) 310, 663
AclWI GGATC 4 cut(s) 101, 173, 180, 186
AcsI RAATTY 2 cut(s) 192, 299
AfaI GTAC 4 cut(s) 419, 537, 987, 994
AfiI CCNNNNNNNGG 4 cut(s) 188, 214, 291, 634
AgsI TTSAA 5 cut(s) 95, 124, 290, 433, 467
AleI CACNNNNGTG 1 cut(s) 384
AluBI AGCT 6 cut(s) 159, 409, 592, 631, 770, 1028
AluI AGCT 6 cut(s) 159, 409, 592, 631, 770, 1028
Alw21I GWGCWC 1 cut(s) 161
Alw26I GTCTC 1 cut(s) 142
AlwI GGATC 4 cut(s) 101, 173, 180, 186
Ama87I CYCGRG 1 cut(s) 174
Aor13HI TCCGGA 2 cut(s) 142, 188
AoxI GGCC 3 cut(s) 545, 691, 884
ApeKI GCWGC 4 cut(s) 50, 168, 592, 729
ApoI RAATTY 2 cut(s) 192, 299
ArsI GACNNNNNNTTYG 1 cut(s) 1069
Asp718I GGTACC 1 cut(s) 535
AspLEI GCGC 1 cut(s) 1059
AspS9I GGNCC 2 cut(s) 145, 691
AsuC2I CCSGG 6 cut(s) 175, 176, 209, 233, 278, 306
AsuHPI GGTGA 1 cut(s) 911
AvaI CYCGRG 1 cut(s) 174
AvaII GGWCC 1 cut(s) 145
BamHI GGATCC 1 cut(s) 178
BanI GGYRCC 1 cut(s) 535
BanII GRGCYC 2 cut(s) 161, 958
BarI GAAGNNNNNNTAC 2 cut(s) 735, 767
Bbv12I GWGCWC 1 cut(s) 161
BbvI GCAGC 4 cut(s) 62, 155, 579, 716
BccI CCATC 2 cut(s) 367, 846
BceAI ACGGC 1 cut(s) 269
BcgI CGANNNNNNTGC 2 cut(s) 55, 89
BcnI CCSGG 6 cut(s) 175, 176, 209, 233, 278, 306
BcoDI GTCTC 1 cut(s) 142
BfaI CTAG 4 cut(s) 842, 888, 941, 1014
BglI GCCNNNNNGGC 1 cut(s) 601
BisI GCNGC 4 cut(s) 51, 169, 593, 730
BlsI GCNGC 4 cut(s) 52, 170, 594, 731
Bme1390I CCNGG 6 cut(s) 175, 176, 209, 233, 278, 306
Bme18I GGWCC 1 cut(s) 145
BmeT110I CYCGRG 1 cut(s) 174
BmgT120I GGNCC 2 cut(s) 145, 691
BmiI GGNNCC 2 cut(s) 180, 537
BmrFI CCNGG 6 cut(s) 175, 176, 209, 233, 278, 306
Bpu10I CCTNAGC 1 cut(s) 55
BpuEI CTTGAG 1 cut(s) 653
BpuMI CCSGG 6 cut(s) 175, 176, 209, 233, 278, 306
Bsa29I ATCGAT 1 cut(s) 43
BsaI GGTCTC 1 cut(s) 142
BsaJI CCNNGG 7 cut(s) 110, 173, 174, 276, 305, 476, 694
BsaWI WCCGGW 2 cut(s) 142, 188
BsaXI ACNNNNNCTCC 2 cut(s) 319, 349
Bsc4I CCNNNNNNNGG 4 cut(s) 188, 214, 291, 634
Bse3DI GCAATG 1 cut(s) 704
BseAI TCCGGA 2 cut(s) 142, 188
BseCI ATCGAT 1 cut(s) 43
BseDI CCNNGG 7 cut(s) 110, 173, 174, 276, 305, 476, 694
BseGI GGATG 3 cut(s) 359, 568, 834
BseLI CCNNNNNNNGG 4 cut(s) 188, 214, 291, 634
BseMI GCAATG 1 cut(s) 704
BseMII CTCAG 2 cut(s) 282, 401
BseXI GCAGC 4 cut(s) 62, 155, 579, 716
BseYI CCCAGC 1 cut(s) 766
BshFI GGCC 3 cut(s) 547, 693, 886
BshNI GGYRCC 1 cut(s) 535
BshVI ATCGAT 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 161
BsiHKCI CYCGRG 1 cut(s) 174
BsiSI CCGG 8 cut(s) 143, 175, 189, 209, 232, 257, 278, 305
BslFI GGGAC 2 cut(s) 961, 1090
BslI CCNNNNNNNGG 4 cut(s) 188, 214, 291, 634
BsmAI GTCTC 1 cut(s) 142
BsmFI GGGAC 2 cut(s) 961, 1090
BsnI GGCC 3 cut(s) 547, 693, 886
Bso31I GGTCTC 1 cut(s) 142
BsoBI CYCGRG 1 cut(s) 174
Bsp1286I GDGCHC 2 cut(s) 161, 958
Bsp13I TCCGGA 2 cut(s) 142, 188
Bsp143I GATC 5 cut(s) 106, 178, 185, 582, 943
BspACI CCGC 2 cut(s) 310, 663
BspANI GGCC 3 cut(s) 547, 693, 886
BspCNI CTCAG 2 cut(s) 281, 402
BspDI ATCGAT 1 cut(s) 43
BspEI TCCGGA 2 cut(s) 142, 188
BspHI TCATGA 2 cut(s) 735, 853
BspLI GGNNCC 2 cut(s) 180, 537
BspPI GGATC 4 cut(s) 101, 173, 180, 186
BspT107I GGYRCC 1 cut(s) 535
BspTNI GGTCTC 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 704
BssECI CCNNGG 7 cut(s) 110, 173, 174, 276, 305, 476, 694
BssMI GATC 5 cut(s) 106, 178, 185, 582, 943
BssT1I CCWWGG 1 cut(s) 476
Bst4CI ACNGT 2 cut(s) 383, 513
Bst6I CTCTTC 2 cut(s) 309, 462
BstC8I GCNNGC 7 cut(s) 30, 254, 545, 711, 727, 828, 938
BstDEI CTNAG 3 cut(s) 55, 268, 410
BstDSI CCRYGG 1 cut(s) 110
BstF5I GGATG 3 cut(s) 359, 568, 834
BstHHI GCGC 1 cut(s) 1059
BstKTI GATC 5 cut(s) 109, 181, 188, 585, 946
BstMAI GTCTC 1 cut(s) 142
BstMBI GATC 5 cut(s) 106, 178, 185, 582, 943
BstMWI GCNNNNNNNGC 4 cut(s) 56, 165, 453, 601
BstNSI RCATGY 2 cut(s) 729, 940
BstSCI CCNGG 6 cut(s) 173, 174, 207, 231, 276, 304
BstV1I GCAGC 4 cut(s) 62, 155, 579, 716
BstX2I RGATCY 2 cut(s) 178, 185
BstYI RGATCY 2 cut(s) 178, 185
Bsu15I ATCGAT 1 cut(s) 43
BsuRI GGCC 3 cut(s) 547, 693, 886
BsuTUI ATCGAT 1 cut(s) 43
BtgI CCRYGG 1 cut(s) 110
BtsCI GGATG 3 cut(s) 359, 568, 834
BtsIMutI CAGTG 1 cut(s) 388
Cac8I GCNNGC 7 cut(s) 30, 254, 545, 711, 727, 828, 938
CciI TCATGA 2 cut(s) 735, 853
CfoI GCGC 1 cut(s) 1059
Cfr13I GGNCC 2 cut(s) 145, 691
Cfr9I CCCGGG 1 cut(s) 174
ClaI ATCGAT 1 cut(s) 43
Csp6I GTAC 4 cut(s) 418, 536, 986, 993
CspCI CAANNNNNGTGG 2 cut(s) 262, 297
CviAII CATG 8 cut(s) 491, 540, 726, 736, 786, 854, 937, 983
CviQI GTAC 4 cut(s) 418, 536, 986, 993
DdeI CTNAG 3 cut(s) 55, 268, 410
DpnI GATC 5 cut(s) 108, 180, 187, 584, 945
DpnII GATC 5 cut(s) 106, 178, 185, 582, 943
DraI TTTAAA 2 cut(s) 298, 876
Eam1104I CTCTTC 2 cut(s) 309, 462
EarI CTCTTC 2 cut(s) 309, 462
EciI GGCGGA 1 cut(s) 678
Ecl136II GAGCTC 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 476
Eco24I GRGCYC 2 cut(s) 161, 958
Eco31I GGTCTC 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 145
Eco53kI GAGCTC 1 cut(s) 159
Eco88I CYCGRG 1 cut(s) 174
EcoICRI GAGCTC 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 476
EcoT38I GRGCYC 2 cut(s) 161, 958
ErhI CCWWGG 1 cut(s) 476
FaeI CATG 8 cut(s) 494, 543, 729, 739, 789, 857, 940, 986
FalI AAGNNNNNCTT 2 cut(s) 1017, 1049
FaqI GGGAC 2 cut(s) 961, 1090
FatI CATG 8 cut(s) 490, 539, 725, 735, 785, 853, 936, 982
FauI CCCGC 1 cut(s) 303
FblI GTMKAC 1 cut(s) 498
Fnu4HI GCNGC 4 cut(s) 51, 169, 593, 730
FokI GGATG 3 cut(s) 346, 575, 821
FriOI GRGCYC 2 cut(s) 161, 958
Fsp4HI GCNGC 4 cut(s) 51, 169, 593, 730
FspBI CTAG 4 cut(s) 842, 888, 941, 1014
GlaI GCGC 1 cut(s) 1058
GluI GCNGC 4 cut(s) 51, 169, 593, 730
GsaI CCCAGC 1 cut(s) 770
HaeIII GGCC 3 cut(s) 547, 693, 886
HapII CCGG 8 cut(s) 143, 175, 189, 209, 232, 257, 278, 305
HhaI GCGC 1 cut(s) 1059
Hin1II CATG 8 cut(s) 494, 543, 729, 739, 789, 857, 940, 986
Hin6I GCGC 1 cut(s) 1057
HinP1I GCGC 1 cut(s) 1057
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HinfI GANTC 5 cut(s) 40, 80, 260, 611, 974
HpaI GTTAAC 1 cut(s) 205
HpaII CCGG 8 cut(s) 143, 175, 189, 209, 232, 257, 278, 305
HphI GGTGA 1 cut(s) 911
Hpy166II GTNNAC 2 cut(s) 205, 499
Hpy188I TCNGA 3 cut(s) 156, 698, 1009
Hpy188III TCNNGA 9 cut(s) 143, 189, 430, 586, 736, 854, 947, 961, 1034
Hpy8I GTNNAC 2 cut(s) 205, 499
HpyAV CCTTC 2 cut(s) 737, 1092
HpyCH4III ACNGT 2 cut(s) 383, 513
HpyCH4V TGCA 6 cut(s) 543, 655, 680, 709, 725, 928
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 165, 453, 601
HpyF3I CTNAG 3 cut(s) 55, 268, 410
Hsp92II CATG 8 cut(s) 494, 543, 729, 739, 789, 857, 940, 986
HspAI GCGC 1 cut(s) 1057
Kpn2I TCCGGA 2 cut(s) 142, 188
KpnI GGTACC 1 cut(s) 539
KspAI GTTAAC 1 cut(s) 205
Kzo9I GATC 5 cut(s) 106, 178, 185, 582, 943
LmnI GCTCC 1 cut(s) 444
Lsp1109I GCAGC 4 cut(s) 62, 155, 579, 716
MaeI CTAG 4 cut(s) 842, 888, 941, 1014
MalI GATC 5 cut(s) 108, 180, 187, 584, 945
MboI GATC 5 cut(s) 106, 178, 185, 582, 943
MboII GAAGA 6 cut(s) 26, 83, 326, 479, 806, 1009
MflI RGATCY 2 cut(s) 178, 185
MhlI GDGCHC 2 cut(s) 161, 958
MluCI AATT 5 cut(s) 162, 192, 299, 797, 871
MlyI GAGTC 2 cut(s) 254, 983
MmeI TCCRAC 1 cut(s) 540
MnlI CCTC 7 cut(s) 28, 83, 94, 158, 594, 628, 704
MroI TCCGGA 2 cut(s) 142, 188
MseI TTAA 4 cut(s) 204, 297, 440, 875
MslI CAYNNNNRTG 1 cut(s) 384
MspI CCGG 8 cut(s) 143, 175, 189, 209, 232, 257, 278, 305
MspR9I CCNGG 6 cut(s) 175, 176, 209, 233, 278, 306
MwoI GCNNNNNNNGC 4 cut(s) 56, 165, 453, 601
NciI CCSGG 6 cut(s) 175, 176, 209, 233, 278, 306
NdeII GATC 5 cut(s) 106, 178, 185, 582, 943
NlaIII CATG 8 cut(s) 494, 543, 729, 739, 789, 857, 940, 986
NlaIV GGNNCC 2 cut(s) 180, 537
NspI RCATGY 2 cut(s) 729, 940
OliI CACNNNNGTG 1 cut(s) 384
PaeI GCATGC 2 cut(s) 729, 940
PagI TCATGA 2 cut(s) 735, 853
PcsI WCGNNNNNNNCGW 1 cut(s) 260
PfeI GAWTC 3 cut(s) 40, 80, 611
PflFI GACNNNGTC 1 cut(s) 669
PkrI GCNGC 4 cut(s) 52, 170, 594, 731
PleI GAGTC 2 cut(s) 254, 982
PpsI GAGTC 2 cut(s) 254, 982
PsiI TTATAA 1 cut(s) 405
Psp124BI GAGCTC 1 cut(s) 161
PspFI CCCAGC 1 cut(s) 766
PspN4I GGNNCC 2 cut(s) 180, 537
PspPI GGNCC 2 cut(s) 145, 691
PsuI RGATCY 2 cut(s) 178, 185
PsyI GACNNNGTC 1 cut(s) 669
RsaI GTAC 4 cut(s) 419, 537, 987, 994
RsaNI GTAC 4 cut(s) 418, 536, 986, 993
RseI CAYNNNNRTG 1 cut(s) 384
SacI GAGCTC 1 cut(s) 161
SaqAI TTAA 4 cut(s) 204, 297, 440, 875
SatI GCNGC 4 cut(s) 51, 169, 593, 730
Sau3AI GATC 5 cut(s) 106, 178, 185, 582, 943
Sau96I GGNCC 2 cut(s) 145, 691
SchI GAGTC 2 cut(s) 254, 983
ScrFI CCNGG 6 cut(s) 175, 176, 209, 233, 278, 306
SduI GDGCHC 2 cut(s) 161, 958
SinI GGWCC 1 cut(s) 145
SmaI CCCGGG 1 cut(s) 176
SmiMI CAYNNNNRTG 1 cut(s) 384
SmlI CTYRAG 1 cut(s) 632
SmoI CTYRAG 1 cut(s) 632
SphI GCATGC 2 cut(s) 729, 940
Sse9I AATT 5 cut(s) 162, 192, 299, 797, 871
SsiI CCGC 2 cut(s) 310, 663
SspMI CTAG 4 cut(s) 842, 888, 941, 1014
SstI GAGCTC 1 cut(s) 161
StyD4I CCNGG 6 cut(s) 173, 174, 207, 231, 276, 304
StyI CCWWGG 1 cut(s) 476
TaaI ACNGT 2 cut(s) 383, 513
TaqI TCGA 3 cut(s) 43, 243, 946
TasI AATT 5 cut(s) 162, 192, 299, 797, 871
TatI WGTACW 1 cut(s) 417
TfiI GAWTC 3 cut(s) 40, 80, 611
Tru1I TTAA 4 cut(s) 204, 297, 440, 875
Tru9I TTAA 4 cut(s) 204, 297, 440, 875
TscAI CASTG 1 cut(s) 388
TseI GCWGC 4 cut(s) 50, 168, 592, 729
TspDTI ATGAA 3 cut(s) 699, 724, 774
TspGWI ACGGA 1 cut(s) 99
TspMI CCCGGG 1 cut(s) 174
TspRI CASTG 1 cut(s) 388
Tth111I GACNNNGTC 1 cut(s) 669
VpaK11BI GGWCC 1 cut(s) 145
XapI RAATTY 2 cut(s) 192, 299
XceI RCATGY 2 cut(s) 729, 940
XcmI CCANNNNNNNNNTGG 1 cut(s) 845
XmaI CCCGGG 1 cut(s) 174
XmiI GTMKAC 1 cut(s) 498
XspI CTAG 4 cut(s) 842, 888, 941, 1014
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.