Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034216.1

Orthogroup ID

OG0006789

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1993

Gene Structure 1993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034216.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

gttaagattgcaatagttggtattacagcgggaggtgttggtcttgatttctcatcagctacacatgttgtcttcttggagcttcctcagtcaccatcattgatgcttcaggctgaggatagagctcacaggcgagggcaaacaaatgcagtcaacatatacttcttttctgggaaggataccattgatgagtcacattggcaatacttgaacaggagtttgcgccgtgtttcatctacaacaaatggaaaatatgatgcaatacaagaaatagcggttgaagatgtttctttttttgagacattgggtggaggtgatacatgtgaagattatactttgcaaaagtcagagggtagtgagttctcagcagagctaatcaaagttcctggttctggctgcttagctaaggctatgaagccttttgagtcaaatgataaattagtgccaaacattccacagagatctgaaagacatcatggtactgatggcatttcatcacaaactgaaaattctgttattaaggatgatgtggtctctgatttggatatggataacagtatctctttagatgagaagttggaaacaaatgttcctgaggctaaaattagagaagggacagtagtctattcttgtgagttaaataagagcagtgaagatagagatggactggaatcactggataagcaggaagacggaatcaaatctcagacaaacaaaggacatgatggccaatctgttcagctgatcaaaggacatgatcgcgaacctgttcagccaatcaaaggatatgatcgcgaacctgttcagccaattgaagctgaagaaggtggcactaaccaagtagatgctcttcgatttgaggtaaaaatgttgttgagaatatatacatcccacatgggaaaaatgggaccttgctcaacaaatgtgtcctggttgtcagattccaattttacacaggtcaaaggctggaaactagtacatgtgaaaacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000228 GO:0000733 GO:0003674 GO:0003676 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0017111 GO:0019219 GO:0019222 GO:0031297 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031593 GO:0031974 GO:0031981 GO:0032392 GO:0033554 GO:0034641 GO:0034645 GO:0036292 GO:0036310 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045005 GO:0045910 GO:0045934 GO:0046483 GO:0048478 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070530 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090329 GO:0097159 GO:0097617 GO:0140030 GO:0140097 GO:1901360 GO:1901363 GO:1901576 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HNH Helicase_C SNF2_N

Protein Analysis

330

Amino Acids

36.47

Weight (kDa)

5.04

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07810
fragaria_vesca	FvH4_5g14341 FvH4_5g14341 FvH4_5g14341 FvH4_5g14341
malus_domestica	MD14G1208200.v1.1
prunus_persica	Prupe.5G200300_v2.0.a1
pyrus_communis	pycom14g17190 pycom14g17200
rosa_chinensis	RchiOBHm_Chr7g0182391
rosa_laevigata	RLG00000005127
rosa_multiflora	Rmu_co8327751.1_g000001 Rmu_sc0000003.1_g000001 Rmu_sc0034215.1_g000001 Rmu_sc0034216.1_g000001 Rmu_sc0037577.1_g000004 Rmu_sc0037929.1_g000001 Rmu_ssc0000034.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271270
rosa_rugosa	Rorug06G0447100
rosa_samantha	Rh7AG050500 Rh7BG050300 Rh7CG051800 Rh7CG051900 Rh7DG049600
rosa_wichuraiana	Rw7G004130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	762, 795
AciI	CCGC	2 cut(s)	29, 275
AcoI	YGGCCR	1 cut(s)	727
AcsI	RAATTY	1 cut(s)	508
AcuI	CTGAAG	2 cut(s)	92, 840
AfaI	GTAC	2 cut(s)	481, 978
AfiI	CCNNNNNNNGG	2 cut(s)	392, 782
AflIII	ACRYGT	3 cut(s)	64, 320, 979
AgsI	TTSAA	3 cut(s)	211, 281, 815
AhlI	ACTAGT	1 cut(s)	973
AjnI	CCWGG	2 cut(s)	385, 929
AluBI	AGCT	7 cut(s)	59, 82, 125, 373, 404, 742, 818
AluI	AGCT	7 cut(s)	59, 82, 125, 373, 404, 742, 818
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	2 cut(s)	293, 538
AoxI	GGCC	1 cut(s)	727
ApeKI	GCWGC	1 cut(s)	396
ApoI	RAATTY	1 cut(s)	508
Asp700I	GAANNNNTTC	2 cut(s)	768, 801
AspLEI	GCGC	1 cut(s)	225
AspS9I	GGNCC	1 cut(s)	908
AsuHPI	GGTGA	2 cut(s)	84, 326
AvaII	GGWCC	1 cut(s)	908
AxyI	CCTNAGG	1 cut(s)	594
BalI	TGGCCA	1 cut(s)	729
BanII	GRGCYC	1 cut(s)	127
BarI	GAAGNNNNNNTAC	2 cut(s)	834, 866
BbsI	GAAGAC	2 cut(s)	64, 696
Bbv12I	GWGCWC	1 cut(s)	127
BbvCI	CCTCAGC	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	383
BccI	CCATC	4 cut(s)	103, 479, 656, 719
BceAI	ACGGC	1 cut(s)	210
BciT130I	CCWGG	2 cut(s)	387, 931
BciVI	GTATCC	1 cut(s)	172
BclI	TGATCA	1 cut(s)	744
BcoDI	GTCTC	2 cut(s)	293, 538
BcuI	ACTAGT	1 cut(s)	973
BfaI	CTAG	1 cut(s)	974
BfuI	GTATCC	1 cut(s)	172
BglII	AGATCT	1 cut(s)	461
BisI	GCNGC	1 cut(s)	397
BlpI	GCTNAGC	1 cut(s)	400
BlsI	GCNGC	1 cut(s)	398
Bme1390I	CCNGG	2 cut(s)	387, 931
Bme18I	GGWCC	1 cut(s)	908
BmgT120I	GGNCC	1 cut(s)	908
BmiI	GGNNCC	1 cut(s)	909
BmrFI	CCNGG	2 cut(s)	387, 931
BmsI	GCATC	3 cut(s)	93, 247, 835
BoxI	GACNNNNGTC	1 cut(s)	620
BpiI	GAAGAC	2 cut(s)	64, 696
Bpu10I	CCTNAGC	2 cut(s)	114, 405
Bpu1102I	GCTNAGC	1 cut(s)	400
BsaI	GGTCTC	1 cut(s)	538
Bsc4I	CCNNNNNNNGG	2 cut(s)	392, 782
Bse1I	ACTGG	2 cut(s)	672, 681
Bse21I	CCTNAGG	1 cut(s)	594
BseBI	CCWGG	2 cut(s)	387, 931
BseGI	GGATG	2 cut(s)	529, 887
BseLI	CCNNNNNNNGG	2 cut(s)	392, 782
BseMII	CTCAG	5 cut(s)	101, 105, 378, 585, 719
BseNI	ACTGG	2 cut(s)	672, 681
BseXI	GCAGC	1 cut(s)	383
Bsh1236I	CGCG	2 cut(s)	762, 795
BshFI	GGCC	1 cut(s)	729
BsiHKAI	GWGCWC	1 cut(s)	127
BslFI	GGGAC	2 cut(s)	628, 921
BslI	CCNNNNNNNGG	2 cut(s)	392, 782
BsmAI	GTCTC	2 cut(s)	293, 538
BsmFI	GGGAC	2 cut(s)	628, 921
BsnI	GGCC	1 cut(s)	729
Bso31I	GGTCTC	1 cut(s)	538
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	4 cut(s)	461, 744, 757, 790
Bsp1720I	GCTNAGC	1 cut(s)	400
Bsp68I	TCGCGA	2 cut(s)	762, 795
BspACI	CCGC	2 cut(s)	29, 275
BspANI	GGCC	1 cut(s)	729
BspCNI	CTCAG	5 cut(s)	100, 106, 377, 586, 718
BspFNI	CGCG	2 cut(s)	762, 795
BspLI	GGNNCC	1 cut(s)	909
BspQI	GCTCTTC	1 cut(s)	855
BspTNI	GGTCTC	1 cut(s)	538
BsrI	ACTGG	2 cut(s)	672, 681
BssMI	GATC	4 cut(s)	461, 744, 757, 790
Bst2UI	CCWGG	2 cut(s)	387, 931
Bst4CI	ACNGT	2 cut(s)	557, 619
Bst6I	CTCTTC	1 cut(s)	855
BstDEI	CTNAG	7 cut(s)	87, 114, 364, 400, 405, 594, 705
BstF5I	GGATG	2 cut(s)	529, 887
BstFNI	CGCG	2 cut(s)	762, 795
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	4 cut(s)	464, 747, 760, 793
BstMAI	GTCTC	2 cut(s)	293, 538
BstMBI	GATC	4 cut(s)	461, 744, 757, 790
BstNI	CCWGG	2 cut(s)	387, 931
BstNSI	RCATGY	3 cut(s)	68, 324, 983
BstPAI	GACNNNNGTC	1 cut(s)	620
BstSCI	CCNGG	2 cut(s)	385, 929
BstUI	CGCG	2 cut(s)	762, 795
BstV1I	GCAGC	1 cut(s)	383
BstV2I	GAAGAC	2 cut(s)	64, 696
BstX2I	RGATCY	1 cut(s)	461
BstYI	RGATCY	1 cut(s)	461
Bsu36I	CCTNAGG	1 cut(s)	594
BsuI	GTATCC	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	729
BtsCI	GGATG	2 cut(s)	529, 887
BtsI	GCAGTG	1 cut(s)	655
BtsIMutI	CAGTG	2 cut(s)	655, 674
BtuMI	TCGCGA	2 cut(s)	762, 795
CfoI	GCGC	1 cut(s)	225
Cfr13I	GGNCC	1 cut(s)	908
Csp6I	GTAC	2 cut(s)	480, 977
CviAII	CATG	8 cut(s)	65, 321, 476, 722, 755, 895, 980, 990
CviQI	GTAC	2 cut(s)	480, 977
DdeI	CTNAG	7 cut(s)	87, 114, 364, 400, 405, 594, 705
DpnI	GATC	4 cut(s)	463, 746, 759, 792
DpnII	GATC	4 cut(s)	461, 744, 757, 790
EaeI	YGGCCR	1 cut(s)	727
Eam1104I	CTCTTC	1 cut(s)	855
EarI	CTCTTC	1 cut(s)	855
Ecl136II	GAGCTC	1 cut(s)	125
Eco24I	GRGCYC	1 cut(s)	127
Eco31I	GGTCTC	1 cut(s)	538
Eco47I	GGWCC	1 cut(s)	908
Eco53kI	GAGCTC	1 cut(s)	125
Eco57I	CTGAAG	2 cut(s)	92, 840
Eco81I	CCTNAGG	1 cut(s)	594
EcoICRI	GAGCTC	1 cut(s)	125
EcoO109I	RGGNCCY	1 cut(s)	908
EcoRII	CCWGG	2 cut(s)	385, 929
EcoT38I	GRGCYC	1 cut(s)	127
FaeI	CATG	8 cut(s)	68, 324, 479, 725, 758, 898, 983, 993
FaqI	GGGAC	2 cut(s)	628, 921
FatI	CATG	8 cut(s)	64, 320, 475, 721, 754, 894, 979, 989
FauI	CCCGC	1 cut(s)	22
FbaI	TGATCA	1 cut(s)	744
Fnu4HI	GCNGC	1 cut(s)	397
FokI	GGATG	2 cut(s)	536, 874
FriOI	GRGCYC	1 cut(s)	127
Fsp4HI	GCNGC	1 cut(s)	397
FspBI	CTAG	1 cut(s)	974
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	1 cut(s)	397
HaeIII	GGCC	1 cut(s)	729
HhaI	GCGC	1 cut(s)	225
Hin1II	CATG	8 cut(s)	68, 324, 479, 725, 758, 898, 983, 993
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	5 cut(s)	191, 425, 671, 696, 941
HphI	GGTGA	2 cut(s)	84, 326
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	5 cut(s)	349, 466, 538, 708, 940
Hpy188III	TCNNGA	4 cut(s)	44, 593, 761, 794
Hpy8I	GTNNAC	1 cut(s)	154
HpyAV	CCTTC	3 cut(s)	169, 605, 818
HpyCH4III	ACNGT	2 cut(s)	557, 619
HpyCH4V	TGCA	4 cut(s)	11, 149, 260, 340
HpyF3I	CTNAG	7 cut(s)	87, 114, 364, 400, 405, 594, 705
Hsp92II	CATG	8 cut(s)	68, 324, 479, 725, 758, 898, 983, 993
HspAI	GCGC	1 cut(s)	223
Ksp22I	TGATCA	1 cut(s)	744
Kzo9I	GATC	4 cut(s)	461, 744, 757, 790
LguI	GCTCTTC	1 cut(s)	855
LmnI	GCTCC	1 cut(s)	79
Lsp1109I	GCAGC	1 cut(s)	383
LweI	GCATC	3 cut(s)	93, 247, 835
MaeI	CTAG	1 cut(s)	974
MaeIII	GTNAC	2 cut(s)	90, 192
MalI	GATC	4 cut(s)	463, 746, 759, 792
MboI	GATC	4 cut(s)	461, 744, 757, 790
MboII	GAAGA	7 cut(s)	64, 293, 338, 665, 701, 833, 842
MfeI	CAATTG	1 cut(s)	810
MflI	RGATCY	1 cut(s)	461
MhlI	GDGCHC	1 cut(s)	127
MlsI	TGGCCA	1 cut(s)	729
MluCI	AATT	5 cut(s)	437, 508, 603, 810, 946
MluNI	TGGCCA	1 cut(s)	729
MlyI	GAGTC	2 cut(s)	200, 434
MmeI	TCCRAC	1 cut(s)	558
MnlI	CCTC	8 cut(s)	26, 96, 109, 128, 305, 343, 589, 853
Mox20I	TGGCCA	1 cut(s)	729
MroXI	GAANNNNTTC	2 cut(s)	768, 801
MscI	TGGCCA	1 cut(s)	729
MseI	TTAA	3 cut(s)	3, 519, 638
Msp20I	TGGCCA	1 cut(s)	729
MspA1I	CMGCKG	2 cut(s)	29, 742
MspR9I	CCNGG	2 cut(s)	387, 931
MunI	CAATTG	1 cut(s)	810
MvaI	CCWGG	2 cut(s)	387, 931
MvnI	CGCG	2 cut(s)	762, 795
NdeII	GATC	4 cut(s)	461, 744, 757, 790
NlaIII	CATG	8 cut(s)	68, 324, 479, 725, 758, 898, 983, 993
NlaIV	GGNNCC	1 cut(s)	909
NmuCI	GTSAC	2 cut(s)	90, 192
NruI	TCGCGA	2 cut(s)	762, 795
NspI	RCATGY	3 cut(s)	68, 324, 983
PciI	ACATGT	3 cut(s)	64, 320, 979
PciSI	GCTCTTC	1 cut(s)	855
PdmI	GAANNNNTTC	2 cut(s)	768, 801
PfeI	GAWTC	3 cut(s)	671, 696, 941
PkrI	GCNGC	1 cut(s)	398
PleI	GAGTC	2 cut(s)	199, 433
PpsI	GAGTC	2 cut(s)	199, 433
PpuMI	RGGWCCY	1 cut(s)	908
PscI	ACATGT	3 cut(s)	64, 320, 979
PshAI	GACNNNNGTC	1 cut(s)	620
Psp124BI	GAGCTC	1 cut(s)	127
Psp5II	RGGWCCY	1 cut(s)	908
Psp6I	CCWGG	2 cut(s)	385, 929
PspGI	CCWGG	2 cut(s)	385, 929
PspN4I	GGNNCC	1 cut(s)	909
PspPI	GGNCC	1 cut(s)	908
PspPPI	RGGWCCY	1 cut(s)	908
PsuI	RGATCY	1 cut(s)	461
PvuII	CAGCTG	1 cut(s)	742
RruI	TCGCGA	2 cut(s)	762, 795
RsaI	GTAC	2 cut(s)	481, 978
RsaNI	GTAC	2 cut(s)	480, 977
SacI	GAGCTC	1 cut(s)	127
SapI	GCTCTTC	1 cut(s)	855
SaqAI	TTAA	3 cut(s)	3, 519, 638
SatI	GCNGC	1 cut(s)	397
Sau3AI	GATC	4 cut(s)	461, 744, 757, 790
Sau96I	GGNCC	1 cut(s)	908
SchI	GAGTC	2 cut(s)	200, 434
ScrFI	CCNGG	2 cut(s)	387, 931
SduI	GDGCHC	1 cut(s)	127
SfaNI	GCATC	3 cut(s)	93, 247, 835
SinI	GGWCC	1 cut(s)	908
SpeI	ACTAGT	1 cut(s)	973
Sse9I	AATT	5 cut(s)	437, 508, 603, 810, 946
SsiI	CCGC	2 cut(s)	29, 275
SspMI	CTAG	1 cut(s)	974
SstI	GAGCTC	1 cut(s)	127
StyD4I	CCNGG	2 cut(s)	385, 929
TaaI	ACNGT	2 cut(s)	557, 619
TaqI	TCGA	1 cut(s)	853
TasI	AATT	5 cut(s)	437, 508, 603, 810, 946
TatI	WGTACW	1 cut(s)	976
TfiI	GAWTC	3 cut(s)	671, 696, 941
Tru1I	TTAA	3 cut(s)	3, 519, 638
Tru9I	TTAA	3 cut(s)	3, 519, 638
TscAI	CASTG	2 cut(s)	655, 681
TseFI	GTSAC	2 cut(s)	90, 192
TseI	GCWGC	1 cut(s)	396
Tsp45I	GTSAC	2 cut(s)	90, 192
TspDTI	ATGAA	3 cut(s)	222, 428, 483
TspGWI	ACGGA	1 cut(s)	708
TspRI	CASTG	2 cut(s)	655, 681
VpaK11BI	GGWCC	1 cut(s)	908
XapI	RAATTY	1 cut(s)	508
XceI	RCATGY	3 cut(s)	68, 324, 983
XmnI	GAANNNNTTC	2 cut(s)	768, 801
XspI	CTAG	1 cut(s)	974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.