Rmu_ssc0000034.1_g000003

DNA annealing helicase and endonuclease

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000034.1
Physical Location & Seq
Reverse (-)
1303 .. 4649
3347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000034.1_g000003.1.cds

Sequence Viewer

Length: 1233 bp
atgggaccttgctcaacaaatgtgtcctggttgtcagattccaattttacacaggtgagtcaatataccggtagaatccacttgtattcttgcatctcaggagaggattcaagaccaaggccactttttgagaattttagaccagaggaacttgagtcactaagttcttctgccgctgaaagtactaaaggaacagtttcaaattcattcaaggataacccagcttatttgcatgcacttcttgaattctataaagaatggaagaaactgaggcccattgaacaaaagaaattaattggaaagcctttgcaacttcctttgactgttgagttgtgctttctgtgtgaaggcactaaccacgacaatacgggactgctgaagggccgaagcaagcgccgctctacaccttttgatgagattagcaaacccctaccatcaaatgctgtgtggaaaaaggtccacctacgtagtggctatggaaaaaaggagaagcaatacactcagggttacactttgactgatgaacctctctgtaaactctgccaaacaccatgcgagagccccaatgccaaggaacctgaatattttgaagacctgttctgtaatcttgactgttatggagagtaccgtatccgaactagtaacagatctattcgtcacgaactttttcaactagaacgcggtgtctgtgcaaattgtcagttggactgtcataaacttgtggagcacataagacctttatctgatgtaaaccggaggcagtatattgaaaagtttgcaccaagagtggcaaggttgaagaagttgcttgagaggcttgttaaggatccaacagagggaaatgcatggcatgcagatcaccttgtccctgtctatcttggtggaggtgaatgcaggctagagaacatgaggactctgtgtgtggcctgtcattctgatgttactagagcacaatgtgctgaacggcggtcaacaaggagcaaggctaagaaacaactgaaagcaatcatgagtgaccttaaaaacaaaggcacagagattaacccaaaggaccagggggatccagaggcagaggagaatttgagtgatgacgaacttttagtcaaggttcctgggagcgcctactcattagcaaatcgtggggatgctacaacgatgaatgaagacttggaagagccctccaatagtgagaagattcccagagtagaaaaattcacgtatacgcctatctag
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

410

Amino Acids

46.71

Weight (kDa)

8.06

Isoelectric Point (pI)

44.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 399
AccI GTMKAC 1 cut(s) 1220
AccII CGCG 1 cut(s) 681
AciI CCGC 4 cut(s) 174, 397, 681, 967
AclWI GGATC 4 cut(s) 821, 834, 1055, 1068
AcsI RAATTY 5 cut(s) 133, 202, 245, 1078, 1211
AcuI CTGAAG 1 cut(s) 398
AdeI CACNNNGTG 1 cut(s) 956
AfaI GTAC 2 cut(s) 184, 626
AfiI CCNNNNNNNGG 1 cut(s) 836
AgeI ACCGGT 1 cut(s) 68
AgsI TTSAA 9 cut(s) 111, 201, 211, 245, 281, 590, 671, 770, 799
AhlI ACTAGT 1 cut(s) 638
AjnI CCWGG 3 cut(s) 26, 1053, 1111
AjuI GAANNNNNNNTTGG 2 cut(s) 1151, 1183
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
Alw21I GWGCWC 2 cut(s) 729, 952
AlwI GGATC 4 cut(s) 821, 834, 1055, 1068
AoxI GGCC 4 cut(s) 119, 272, 382, 924
ApoI RAATTY 5 cut(s) 133, 202, 245, 1078, 1211
ArsI GACNNNNNNTTYG 2 cut(s) 1086, 1118
AseI ATTAAT 1 cut(s) 293
AsiGI ACCGGT 1 cut(s) 68
Asp700I GAANNNNTTC 2 cut(s) 196, 666
AspLEI GCGC 2 cut(s) 396, 1121
AspS9I GGNCC 5 cut(s) 5, 273, 382, 457, 1051
AsuHPI GGTGA 3 cut(s) 67, 851, 899
AvaII GGWCC 3 cut(s) 5, 457, 1051
BamHI GGATCC 2 cut(s) 826, 1060
BanII GRGCYC 2 cut(s) 563, 1179
BbsI GAAGAC 2 cut(s) 597, 1170
Bbv12I GWGCWC 2 cut(s) 729, 952
BccI CCATC 1 cut(s) 442
BceAI ACGGC 1 cut(s) 980
BciT130I CCWGG 3 cut(s) 28, 1055, 1113
BciVI GTATCC 1 cut(s) 641
BcuI ACTAGT 1 cut(s) 638
BfaI CTAG 5 cut(s) 639, 674, 899, 945, 1231
BfoI RGCGCY 2 cut(s) 397, 1122
BfuI GTATCC 1 cut(s) 641
BglII AGATCT 1 cut(s) 647
BisI GCNGC 2 cut(s) 174, 397
BlsI GCNGC 2 cut(s) 175, 398
BmcAI AGTACT 1 cut(s) 184
Bme1390I CCNGG 3 cut(s) 28, 1055, 1113
Bme18I GGWCC 3 cut(s) 5, 457, 1051
BmgT120I GGNCC 5 cut(s) 5, 273, 382, 457, 1051
BmiI GGNNCC 5 cut(s) 6, 576, 828, 1062, 1110
BmrFI CCNGG 3 cut(s) 28, 1055, 1113
BmsI GCATC 2 cut(s) 102, 1135
BpiI GAAGAC 2 cut(s) 597, 1170
BpuEI CTTGAG 2 cut(s) 173, 830
BsaAI YACGTR 2 cut(s) 467, 1218
BsaJI CCNNGG 4 cut(s) 116, 570, 1054, 1112
BsaWI WCCGGW 2 cut(s) 68, 753
Bsc4I CCNNNNNNNGG 1 cut(s) 836
Bse118I RCCGGY 1 cut(s) 68
BseBI CCWGG 3 cut(s) 28, 1055, 1113
BseDI CCNNGG 4 cut(s) 116, 570, 1054, 1112
BseGI GGATG 1 cut(s) 1150
BseLI CCNNNNNNNGG 1 cut(s) 836
BseMII CTCAG 3 cut(s) 111, 260, 515
BseRI GAGGAG 1 cut(s) 1088
BseYI CCCAGC 1 cut(s) 220
Bsh1236I CGCG 1 cut(s) 681
BshFI GGCC 4 cut(s) 121, 274, 384, 926
BshTI ACCGGT 1 cut(s) 68
BsiHKAI GWGCWC 2 cut(s) 729, 952
BsiSI CCGG 2 cut(s) 69, 754
BslFI GGGAC 3 cut(s) 18, 384, 851
BslI CCNNNNNNNGG 1 cut(s) 836
BsmFI GGGAC 3 cut(s) 18, 384, 851
BsmI GAATGC 1 cut(s) 896
BsnI GGCC 4 cut(s) 121, 274, 384, 926
Bsp1286I GDGCHC 4 cut(s) 563, 729, 952, 1179
Bsp143I GATC 4 cut(s) 647, 826, 856, 1060
BspACI CCGC 4 cut(s) 174, 397, 681, 967
BspANI GGCC 4 cut(s) 121, 274, 384, 926
BspCNI CTCAG 3 cut(s) 110, 261, 514
BspFNI CGCG 1 cut(s) 681
BspHI TCATGA 1 cut(s) 1008
BspLI GGNNCC 5 cut(s) 6, 576, 828, 1062, 1110
BspPI GGATC 4 cut(s) 821, 834, 1055, 1068
BspQI GCTCTTC 1 cut(s) 1167
BsrBI CCGCTC 1 cut(s) 399
BsrFI RCCGGY 1 cut(s) 68
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 4 cut(s) 116, 570, 1054, 1112
BssMI GATC 4 cut(s) 647, 826, 856, 1060
BssNAI GTATAC 1 cut(s) 1221
BssT1I CCWWGG 2 cut(s) 116, 570
Bst1107I GTATAC 1 cut(s) 1221
Bst2UI CCWGG 3 cut(s) 28, 1055, 1113
Bst4CI ACNGT 5 cut(s) 196, 325, 614, 629, 710
Bst6I CTCTTC 1 cut(s) 1167
BstAPI GCANNNNNTGC 2 cut(s) 851, 956
BstBAI YACGTR 2 cut(s) 467, 1218
BstC8I GCNNGC 4 cut(s) 234, 392, 852, 896
BstDEI CTNAG 5 cut(s) 97, 161, 269, 501, 987
BstF5I GGATG 1 cut(s) 1150
BstFNI CGCG 1 cut(s) 681
BstH2I RGCGCY 2 cut(s) 397, 1122
BstHHI GCGC 2 cut(s) 396, 1121
BstKTI GATC 4 cut(s) 650, 829, 859, 1063
BstMBI GATC 4 cut(s) 647, 826, 856, 1060
BstMWI GCNNNNNNNGC 4 cut(s) 396, 814, 851, 956
BstNI CCWGG 3 cut(s) 28, 1055, 1113
BstNSI RCATGY 2 cut(s) 236, 854
BstSCI CCNGG 3 cut(s) 26, 1053, 1111
BstSNI TACGTA 1 cut(s) 467
BstUI CGCG 1 cut(s) 681
BstV2I GAAGAC 2 cut(s) 597, 1170
BstX2I RGATCY 3 cut(s) 647, 826, 1060
BstYI RGATCY 3 cut(s) 647, 826, 1060
BstZ17I GTATAC 1 cut(s) 1221
BsuI GTATCC 1 cut(s) 641
BsuRI GGCC 4 cut(s) 121, 274, 384, 926
BtsCI GGATG 1 cut(s) 1150
Cac8I GCNNGC 4 cut(s) 234, 392, 852, 896
CciI TCATGA 1 cut(s) 1008
CfoI GCGC 2 cut(s) 396, 1121
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 5 cut(s) 5, 273, 382, 457, 1051
Csp6I GTAC 2 cut(s) 183, 625
CspAI ACCGGT 1 cut(s) 68
CviAII CATG 6 cut(s) 233, 552, 846, 851, 907, 1009
CviQI GTAC 2 cut(s) 183, 625
DdeI CTNAG 5 cut(s) 97, 161, 269, 501, 987
DpnI GATC 4 cut(s) 649, 828, 858, 1062
DpnII GATC 4 cut(s) 647, 826, 856, 1060
DraIII CACNNNGTG 1 cut(s) 956
Eam1104I CTCTTC 1 cut(s) 1167
EarI CTCTTC 1 cut(s) 1167
Eco105I TACGTA 1 cut(s) 467
Eco130I CCWWGG 2 cut(s) 116, 570
Eco24I GRGCYC 2 cut(s) 563, 1179
Eco47I GGWCC 3 cut(s) 5, 457, 1051
Eco57I CTGAAG 1 cut(s) 398
EcoO109I RGGNCCY 1 cut(s) 5
EcoRI GAATTC 1 cut(s) 245
EcoRII CCWGG 3 cut(s) 26, 1053, 1111
EcoT14I CCWWGG 2 cut(s) 116, 570
EcoT22I ATGCAT 1 cut(s) 847
EcoT38I GRGCYC 2 cut(s) 563, 1179
ErhI CCWWGG 2 cut(s) 116, 570
FaeI CATG 6 cut(s) 236, 555, 849, 854, 910, 1012
FaqI GGGAC 3 cut(s) 18, 384, 851
FatI CATG 6 cut(s) 232, 551, 845, 850, 906, 1008
FblI GTMKAC 1 cut(s) 1220
Fnu4HI GCNGC 2 cut(s) 174, 397
FokI GGATG 1 cut(s) 1157
FriOI GRGCYC 2 cut(s) 563, 1179
Fsp4HI GCNGC 2 cut(s) 174, 397
FspBI CTAG 5 cut(s) 639, 674, 899, 945, 1231
GlaI GCGC 2 cut(s) 395, 1120
GluI GCNGC 2 cut(s) 174, 397
GsaI CCCAGC 1 cut(s) 224
HaeII RGCGCY 2 cut(s) 397, 1122
HaeIII GGCC 4 cut(s) 121, 274, 384, 926
HapII CCGG 2 cut(s) 69, 754
HhaI GCGC 2 cut(s) 396, 1121
Hin1II CATG 6 cut(s) 236, 555, 849, 854, 910, 1012
Hin6I GCGC 2 cut(s) 394, 1119
HinP1I GCGC 2 cut(s) 394, 1119
HincII GTYRAC 1 cut(s) 972
HindII GTYRAC 1 cut(s) 972
HinfI GANTC 7 cut(s) 38, 58, 75, 107, 155, 913, 1195
HpaII CCGG 2 cut(s) 69, 754
HphI GGTGA 3 cut(s) 67, 851, 899
Hpy166II GTNNAC 5 cut(s) 460, 536, 751, 972, 1221
Hpy188I TCNGA 4 cut(s) 37, 635, 745, 937
Hpy188III TCNNGA 7 cut(s) 99, 111, 242, 608, 659, 1009, 1064
Hpy8I GTNNAC 5 cut(s) 460, 536, 751, 972, 1221
HpyAV CCTTC 2 cut(s) 341, 373
HpyCH4III ACNGT 5 cut(s) 196, 325, 614, 629, 710
HpyCH4IV ACGT 2 cut(s) 466, 1217
HpyCH4V TGCA 9 cut(s) 93, 232, 236, 310, 692, 779, 845, 854, 894
HpyF10VI GCNNNNNNNGC 4 cut(s) 396, 814, 851, 956
HpyF3I CTNAG 5 cut(s) 97, 161, 269, 501, 987
HpySE526I ACGT 2 cut(s) 466, 1217
Hsp92II CATG 6 cut(s) 236, 555, 849, 854, 910, 1012
HspAI GCGC 2 cut(s) 394, 1119
Kzo9I GATC 4 cut(s) 647, 826, 856, 1060
LguI GCTCTTC 1 cut(s) 1167
LmnI GCTCC 3 cut(s) 724, 978, 1116
LweI GCATC 2 cut(s) 102, 1135
MaeI CTAG 5 cut(s) 639, 674, 899, 945, 1231
MaeII ACGT 2 cut(s) 466, 1217
MaeIII GTNAC 6 cut(s) 156, 506, 641, 656, 940, 1013
MalI GATC 4 cut(s) 649, 828, 858, 1062
MbiI CCGCTC 1 cut(s) 399
MboI GATC 4 cut(s) 647, 826, 856, 1060
MboII GAAGA 7 cut(s) 159, 274, 602, 811, 1175, 1184, 1204
MflI RGATCY 3 cut(s) 647, 826, 1060
MhlI GDGCHC 4 cut(s) 563, 729, 952, 1179
MluCI AATT 9 cut(s) 43, 133, 202, 245, 290, 294, 694, 1078, 1211
MlyI GAGTC 3 cut(s) 67, 164, 907
MmeI TCCRAC 2 cut(s) 684, 854
Mph1103I ATGCAT 1 cut(s) 847
MroXI GAANNNNTTC 2 cut(s) 196, 666
MseI TTAA 4 cut(s) 293, 822, 1020, 1041
MslI CAYNNNNRTG 1 cut(s) 936
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 2 cut(s) 69, 754
MspR9I CCNGG 3 cut(s) 28, 1055, 1113
Mva1269I GAATGC 1 cut(s) 896
MvaI CCWGG 3 cut(s) 28, 1055, 1113
MvnI CGCG 1 cut(s) 681
MwoI GCNNNNNNNGC 4 cut(s) 396, 814, 851, 956
NdeII GATC 4 cut(s) 647, 826, 856, 1060
NlaIII CATG 6 cut(s) 236, 555, 849, 854, 910, 1012
NlaIV GGNNCC 5 cut(s) 6, 576, 828, 1062, 1110
NmuCI GTSAC 3 cut(s) 156, 656, 1013
NsiI ATGCAT 1 cut(s) 847
NspI RCATGY 2 cut(s) 236, 854
PaeI GCATGC 2 cut(s) 236, 854
PagI TCATGA 1 cut(s) 1008
PciSI GCTCTTC 1 cut(s) 1167
PctI GAATGC 1 cut(s) 896
PdmI GAANNNNTTC 2 cut(s) 196, 666
PfeI GAWTC 4 cut(s) 38, 75, 107, 1195
PinAI ACCGGT 1 cut(s) 68
PkrI GCNGC 2 cut(s) 175, 398
PleI GAGTC 3 cut(s) 66, 163, 907
PpsI GAGTC 3 cut(s) 66, 163, 907
Ppu21I YACGTR 2 cut(s) 467, 1218
PpuMI RGGWCCY 1 cut(s) 5
PshBI ATTAAT 1 cut(s) 293
Psp5II RGGWCCY 1 cut(s) 5
Psp6I CCWGG 3 cut(s) 26, 1053, 1111
PspFI CCCAGC 1 cut(s) 220
PspGI CCWGG 3 cut(s) 26, 1053, 1111
PspN4I GGNNCC 5 cut(s) 6, 576, 828, 1062, 1110
PspPI GGNCC 5 cut(s) 5, 273, 382, 457, 1051
PspPPI RGGWCCY 1 cut(s) 5
PsuI RGATCY 3 cut(s) 647, 826, 1060
RsaI GTAC 2 cut(s) 184, 626
RsaNI GTAC 2 cut(s) 183, 625
RseI CAYNNNNRTG 1 cut(s) 936
SapI GCTCTTC 1 cut(s) 1167
SaqAI TTAA 4 cut(s) 293, 822, 1020, 1041
SatI GCNGC 2 cut(s) 174, 397
Sau3AI GATC 4 cut(s) 647, 826, 856, 1060
Sau96I GGNCC 5 cut(s) 5, 273, 382, 457, 1051
ScaI AGTACT 1 cut(s) 184
SchI GAGTC 3 cut(s) 67, 164, 907
ScrFI CCNGG 3 cut(s) 28, 1055, 1113
SduI GDGCHC 4 cut(s) 563, 729, 952, 1179
SfaNI GCATC 2 cut(s) 102, 1135
SinI GGWCC 3 cut(s) 5, 457, 1051
SmiMI CAYNNNNRTG 1 cut(s) 936
SmlI CTYRAG 2 cut(s) 152, 809
SmoI CTYRAG 2 cut(s) 152, 809
SnaBI TACGTA 1 cut(s) 467
SpeI ACTAGT 1 cut(s) 638
SphI GCATGC 2 cut(s) 236, 854
Sse9I AATT 9 cut(s) 43, 133, 202, 245, 290, 294, 694, 1078, 1211
SsiI CCGC 4 cut(s) 174, 397, 681, 967
SspI AATATT 1 cut(s) 584
SspMI CTAG 5 cut(s) 639, 674, 899, 945, 1231
StyD4I CCNGG 3 cut(s) 26, 1053, 1111
StyI CCWWGG 2 cut(s) 116, 570
TaaI ACNGT 5 cut(s) 196, 325, 614, 629, 710
TaiI ACGT 2 cut(s) 469, 1220
TasI AATT 9 cut(s) 43, 133, 202, 245, 290, 294, 694, 1078, 1211
TatI WGTACW 1 cut(s) 182
TauI GCSGC 2 cut(s) 176, 399
TfiI GAWTC 4 cut(s) 38, 75, 107, 1195
Tru1I TTAA 4 cut(s) 293, 822, 1020, 1041
Tru9I TTAA 4 cut(s) 293, 822, 1020, 1041
TseFI GTSAC 3 cut(s) 156, 656, 1013
Tsp45I GTSAC 3 cut(s) 156, 656, 1013
TspDTI ATGAA 4 cut(s) 195, 537, 1172, 1176
VpaK11BI GGWCC 3 cut(s) 5, 457, 1051
VspI ATTAAT 1 cut(s) 293
XapI RAATTY 5 cut(s) 133, 202, 245, 1078, 1211
XceI RCATGY 2 cut(s) 236, 854
XcmI CCANNNNNNNNNTGG 1 cut(s) 467
XmiI GTMKAC 1 cut(s) 1220
XmnI GAANNNNTTC 2 cut(s) 196, 666
XspI CTAG 5 cut(s) 639, 674, 899, 945, 1231
ZrmI AGTACT 1 cut(s) 184
Zsp2I ATGCAT 1 cut(s) 847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.