DNA annealing helicase and endonuclease
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G07810 |
| fragaria_vesca | FvH4_5g14341 FvH4_5g14341 FvH4_5g14341 FvH4_5g14341 |
| malus_domestica | MD14G1208200.v1.1 |
| prunus_persica | Prupe.5G200300_v2.0.a1 |
| pyrus_communis | pycom14g17190 pycom14g17200 |
| rosa_chinensis | RchiOBHm_Chr7g0182391 |
| rosa_laevigata | RLG00000005127 |
| rosa_multiflora | Rmu_co8327751.1_g000001 Rmu_sc0000003.1_g000001 Rmu_sc0034215.1_g000001 Rmu_sc0034216.1_g000001 Rmu_sc0037577.1_g000004 Rmu_sc0037929.1_g000001 Rmu_ssc0000034.1_g000003 |
| rosa_roxburghii | Rroxscaffold_3G00271270 |
| rosa_rugosa | Rorug06G0447100 |
| rosa_samantha | Rh7AG050500 Rh7BG050300 Rh7CG051800 Rh7CG051900 Rh7DG049600 |
| rosa_wichuraiana | Rw7G004130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 399 |
| AccI | GTMKAC | 1 cut(s) | 1220 |
| AccII | CGCG | 1 cut(s) | 681 |
| AciI | CCGC | 4 cut(s) | 174, 397, 681, 967 |
| AclWI | GGATC | 4 cut(s) | 821, 834, 1055, 1068 |
| AcsI | RAATTY | 5 cut(s) | 133, 202, 245, 1078, 1211 |
| AcuI | CTGAAG | 1 cut(s) | 398 |
| AdeI | CACNNNGTG | 1 cut(s) | 956 |
| AfaI | GTAC | 2 cut(s) | 184, 626 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 836 |
| AgeI | ACCGGT | 1 cut(s) | 68 |
| AgsI | TTSAA | 9 cut(s) | 111, 201, 211, 245, 281, 590, 671, 770, 799 |
| AhlI | ACTAGT | 1 cut(s) | 638 |
| AjnI | CCWGG | 3 cut(s) | 26, 1053, 1111 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1151, 1183 |
| AluBI | AGCT | 1 cut(s) | 224 |
| AluI | AGCT | 1 cut(s) | 224 |
| Alw21I | GWGCWC | 2 cut(s) | 729, 952 |
| AlwI | GGATC | 4 cut(s) | 821, 834, 1055, 1068 |
| AoxI | GGCC | 4 cut(s) | 119, 272, 382, 924 |
| ApoI | RAATTY | 5 cut(s) | 133, 202, 245, 1078, 1211 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1086, 1118 |
| AseI | ATTAAT | 1 cut(s) | 293 |
| AsiGI | ACCGGT | 1 cut(s) | 68 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 196, 666 |
| AspLEI | GCGC | 2 cut(s) | 396, 1121 |
| AspS9I | GGNCC | 5 cut(s) | 5, 273, 382, 457, 1051 |
| AsuHPI | GGTGA | 3 cut(s) | 67, 851, 899 |
| AvaII | GGWCC | 3 cut(s) | 5, 457, 1051 |
| BamHI | GGATCC | 2 cut(s) | 826, 1060 |
| BanII | GRGCYC | 2 cut(s) | 563, 1179 |
| BbsI | GAAGAC | 2 cut(s) | 597, 1170 |
| Bbv12I | GWGCWC | 2 cut(s) | 729, 952 |
| BccI | CCATC | 1 cut(s) | 442 |
| BceAI | ACGGC | 1 cut(s) | 980 |
| BciT130I | CCWGG | 3 cut(s) | 28, 1055, 1113 |
| BciVI | GTATCC | 1 cut(s) | 641 |
| BcuI | ACTAGT | 1 cut(s) | 638 |
| BfaI | CTAG | 5 cut(s) | 639, 674, 899, 945, 1231 |
| BfoI | RGCGCY | 2 cut(s) | 397, 1122 |
| BfuI | GTATCC | 1 cut(s) | 641 |
| BglII | AGATCT | 1 cut(s) | 647 |
| BisI | GCNGC | 2 cut(s) | 174, 397 |
| BlsI | GCNGC | 2 cut(s) | 175, 398 |
| BmcAI | AGTACT | 1 cut(s) | 184 |
| Bme1390I | CCNGG | 3 cut(s) | 28, 1055, 1113 |
| Bme18I | GGWCC | 3 cut(s) | 5, 457, 1051 |
| BmgT120I | GGNCC | 5 cut(s) | 5, 273, 382, 457, 1051 |
| BmiI | GGNNCC | 5 cut(s) | 6, 576, 828, 1062, 1110 |
| BmrFI | CCNGG | 3 cut(s) | 28, 1055, 1113 |
| BmsI | GCATC | 2 cut(s) | 102, 1135 |
| BpiI | GAAGAC | 2 cut(s) | 597, 1170 |
| BpuEI | CTTGAG | 2 cut(s) | 173, 830 |
| BsaAI | YACGTR | 2 cut(s) | 467, 1218 |
| BsaJI | CCNNGG | 4 cut(s) | 116, 570, 1054, 1112 |
| BsaWI | WCCGGW | 2 cut(s) | 68, 753 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 836 |
| Bse118I | RCCGGY | 1 cut(s) | 68 |
| BseBI | CCWGG | 3 cut(s) | 28, 1055, 1113 |
| BseDI | CCNNGG | 4 cut(s) | 116, 570, 1054, 1112 |
| BseGI | GGATG | 1 cut(s) | 1150 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 836 |
| BseMII | CTCAG | 3 cut(s) | 111, 260, 515 |
| BseRI | GAGGAG | 1 cut(s) | 1088 |
| BseYI | CCCAGC | 1 cut(s) | 220 |
| Bsh1236I | CGCG | 1 cut(s) | 681 |
| BshFI | GGCC | 4 cut(s) | 121, 274, 384, 926 |
| BshTI | ACCGGT | 1 cut(s) | 68 |
| BsiHKAI | GWGCWC | 2 cut(s) | 729, 952 |
| BsiSI | CCGG | 2 cut(s) | 69, 754 |
| BslFI | GGGAC | 3 cut(s) | 18, 384, 851 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 836 |
| BsmFI | GGGAC | 3 cut(s) | 18, 384, 851 |
| BsmI | GAATGC | 1 cut(s) | 896 |
| BsnI | GGCC | 4 cut(s) | 121, 274, 384, 926 |
| Bsp1286I | GDGCHC | 4 cut(s) | 563, 729, 952, 1179 |
| Bsp143I | GATC | 4 cut(s) | 647, 826, 856, 1060 |
| BspACI | CCGC | 4 cut(s) | 174, 397, 681, 967 |
| BspANI | GGCC | 4 cut(s) | 121, 274, 384, 926 |
| BspCNI | CTCAG | 3 cut(s) | 110, 261, 514 |
| BspFNI | CGCG | 1 cut(s) | 681 |
| BspHI | TCATGA | 1 cut(s) | 1008 |
| BspLI | GGNNCC | 5 cut(s) | 6, 576, 828, 1062, 1110 |
| BspPI | GGATC | 4 cut(s) | 821, 834, 1055, 1068 |
| BspQI | GCTCTTC | 1 cut(s) | 1167 |
| BsrBI | CCGCTC | 1 cut(s) | 399 |
| BsrFI | RCCGGY | 1 cut(s) | 68 |
| BssAI | RCCGGY | 1 cut(s) | 68 |
| BssECI | CCNNGG | 4 cut(s) | 116, 570, 1054, 1112 |
| BssMI | GATC | 4 cut(s) | 647, 826, 856, 1060 |
| BssNAI | GTATAC | 1 cut(s) | 1221 |
| BssT1I | CCWWGG | 2 cut(s) | 116, 570 |
| Bst1107I | GTATAC | 1 cut(s) | 1221 |
| Bst2UI | CCWGG | 3 cut(s) | 28, 1055, 1113 |
| Bst4CI | ACNGT | 5 cut(s) | 196, 325, 614, 629, 710 |
| Bst6I | CTCTTC | 1 cut(s) | 1167 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 851, 956 |
| BstBAI | YACGTR | 2 cut(s) | 467, 1218 |
| BstC8I | GCNNGC | 4 cut(s) | 234, 392, 852, 896 |
| BstDEI | CTNAG | 5 cut(s) | 97, 161, 269, 501, 987 |
| BstF5I | GGATG | 1 cut(s) | 1150 |
| BstFNI | CGCG | 1 cut(s) | 681 |
| BstH2I | RGCGCY | 2 cut(s) | 397, 1122 |
| BstHHI | GCGC | 2 cut(s) | 396, 1121 |
| BstKTI | GATC | 4 cut(s) | 650, 829, 859, 1063 |
| BstMBI | GATC | 4 cut(s) | 647, 826, 856, 1060 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 396, 814, 851, 956 |
| BstNI | CCWGG | 3 cut(s) | 28, 1055, 1113 |
| BstNSI | RCATGY | 2 cut(s) | 236, 854 |
| BstSCI | CCNGG | 3 cut(s) | 26, 1053, 1111 |
| BstSNI | TACGTA | 1 cut(s) | 467 |
| BstUI | CGCG | 1 cut(s) | 681 |
| BstV2I | GAAGAC | 2 cut(s) | 597, 1170 |
| BstX2I | RGATCY | 3 cut(s) | 647, 826, 1060 |
| BstYI | RGATCY | 3 cut(s) | 647, 826, 1060 |
| BstZ17I | GTATAC | 1 cut(s) | 1221 |
| BsuI | GTATCC | 1 cut(s) | 641 |
| BsuRI | GGCC | 4 cut(s) | 121, 274, 384, 926 |
| BtsCI | GGATG | 1 cut(s) | 1150 |
| Cac8I | GCNNGC | 4 cut(s) | 234, 392, 852, 896 |
| CciI | TCATGA | 1 cut(s) | 1008 |
| CfoI | GCGC | 2 cut(s) | 396, 1121 |
| Cfr10I | RCCGGY | 1 cut(s) | 68 |
| Cfr13I | GGNCC | 5 cut(s) | 5, 273, 382, 457, 1051 |
| Csp6I | GTAC | 2 cut(s) | 183, 625 |
| CspAI | ACCGGT | 1 cut(s) | 68 |
| CviAII | CATG | 6 cut(s) | 233, 552, 846, 851, 907, 1009 |
| CviQI | GTAC | 2 cut(s) | 183, 625 |
| DdeI | CTNAG | 5 cut(s) | 97, 161, 269, 501, 987 |
| DpnI | GATC | 4 cut(s) | 649, 828, 858, 1062 |
| DpnII | GATC | 4 cut(s) | 647, 826, 856, 1060 |
| DraIII | CACNNNGTG | 1 cut(s) | 956 |
| Eam1104I | CTCTTC | 1 cut(s) | 1167 |
| EarI | CTCTTC | 1 cut(s) | 1167 |
| Eco105I | TACGTA | 1 cut(s) | 467 |
| Eco130I | CCWWGG | 2 cut(s) | 116, 570 |
| Eco24I | GRGCYC | 2 cut(s) | 563, 1179 |
| Eco47I | GGWCC | 3 cut(s) | 5, 457, 1051 |
| Eco57I | CTGAAG | 1 cut(s) | 398 |
| EcoO109I | RGGNCCY | 1 cut(s) | 5 |
| EcoRI | GAATTC | 1 cut(s) | 245 |
| EcoRII | CCWGG | 3 cut(s) | 26, 1053, 1111 |
| EcoT14I | CCWWGG | 2 cut(s) | 116, 570 |
| EcoT22I | ATGCAT | 1 cut(s) | 847 |
| EcoT38I | GRGCYC | 2 cut(s) | 563, 1179 |
| ErhI | CCWWGG | 2 cut(s) | 116, 570 |
| FaeI | CATG | 6 cut(s) | 236, 555, 849, 854, 910, 1012 |
| FaqI | GGGAC | 3 cut(s) | 18, 384, 851 |
| FatI | CATG | 6 cut(s) | 232, 551, 845, 850, 906, 1008 |
| FblI | GTMKAC | 1 cut(s) | 1220 |
| Fnu4HI | GCNGC | 2 cut(s) | 174, 397 |
| FokI | GGATG | 1 cut(s) | 1157 |
| FriOI | GRGCYC | 2 cut(s) | 563, 1179 |
| Fsp4HI | GCNGC | 2 cut(s) | 174, 397 |
| FspBI | CTAG | 5 cut(s) | 639, 674, 899, 945, 1231 |
| GlaI | GCGC | 2 cut(s) | 395, 1120 |
| GluI | GCNGC | 2 cut(s) | 174, 397 |
| GsaI | CCCAGC | 1 cut(s) | 224 |
| HaeII | RGCGCY | 2 cut(s) | 397, 1122 |
| HaeIII | GGCC | 4 cut(s) | 121, 274, 384, 926 |
| HapII | CCGG | 2 cut(s) | 69, 754 |
| HhaI | GCGC | 2 cut(s) | 396, 1121 |
| Hin1II | CATG | 6 cut(s) | 236, 555, 849, 854, 910, 1012 |
| Hin6I | GCGC | 2 cut(s) | 394, 1119 |
| HinP1I | GCGC | 2 cut(s) | 394, 1119 |
| HincII | GTYRAC | 1 cut(s) | 972 |
| HindII | GTYRAC | 1 cut(s) | 972 |
| HinfI | GANTC | 7 cut(s) | 38, 58, 75, 107, 155, 913, 1195 |
| HpaII | CCGG | 2 cut(s) | 69, 754 |
| HphI | GGTGA | 3 cut(s) | 67, 851, 899 |
| Hpy166II | GTNNAC | 5 cut(s) | 460, 536, 751, 972, 1221 |
| Hpy188I | TCNGA | 4 cut(s) | 37, 635, 745, 937 |
| Hpy188III | TCNNGA | 7 cut(s) | 99, 111, 242, 608, 659, 1009, 1064 |
| Hpy8I | GTNNAC | 5 cut(s) | 460, 536, 751, 972, 1221 |
| HpyAV | CCTTC | 2 cut(s) | 341, 373 |
| HpyCH4III | ACNGT | 5 cut(s) | 196, 325, 614, 629, 710 |
| HpyCH4IV | ACGT | 2 cut(s) | 466, 1217 |
| HpyCH4V | TGCA | 9 cut(s) | 93, 232, 236, 310, 692, 779, 845, 854, 894 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 396, 814, 851, 956 |
| HpyF3I | CTNAG | 5 cut(s) | 97, 161, 269, 501, 987 |
| HpySE526I | ACGT | 2 cut(s) | 466, 1217 |
| Hsp92II | CATG | 6 cut(s) | 236, 555, 849, 854, 910, 1012 |
| HspAI | GCGC | 2 cut(s) | 394, 1119 |
| Kzo9I | GATC | 4 cut(s) | 647, 826, 856, 1060 |
| LguI | GCTCTTC | 1 cut(s) | 1167 |
| LmnI | GCTCC | 3 cut(s) | 724, 978, 1116 |
| LweI | GCATC | 2 cut(s) | 102, 1135 |
| MaeI | CTAG | 5 cut(s) | 639, 674, 899, 945, 1231 |
| MaeII | ACGT | 2 cut(s) | 466, 1217 |
| MaeIII | GTNAC | 6 cut(s) | 156, 506, 641, 656, 940, 1013 |
| MalI | GATC | 4 cut(s) | 649, 828, 858, 1062 |
| MbiI | CCGCTC | 1 cut(s) | 399 |
| MboI | GATC | 4 cut(s) | 647, 826, 856, 1060 |
| MboII | GAAGA | 7 cut(s) | 159, 274, 602, 811, 1175, 1184, 1204 |
| MflI | RGATCY | 3 cut(s) | 647, 826, 1060 |
| MhlI | GDGCHC | 4 cut(s) | 563, 729, 952, 1179 |
| MluCI | AATT | 9 cut(s) | 43, 133, 202, 245, 290, 294, 694, 1078, 1211 |
| MlyI | GAGTC | 3 cut(s) | 67, 164, 907 |
| MmeI | TCCRAC | 2 cut(s) | 684, 854 |
| Mph1103I | ATGCAT | 1 cut(s) | 847 |
| MroXI | GAANNNNTTC | 2 cut(s) | 196, 666 |
| MseI | TTAA | 4 cut(s) | 293, 822, 1020, 1041 |
| MslI | CAYNNNNRTG | 1 cut(s) | 936 |
| MspA1I | CMGCKG | 1 cut(s) | 176 |
| MspI | CCGG | 2 cut(s) | 69, 754 |
| MspR9I | CCNGG | 3 cut(s) | 28, 1055, 1113 |
| Mva1269I | GAATGC | 1 cut(s) | 896 |
| MvaI | CCWGG | 3 cut(s) | 28, 1055, 1113 |
| MvnI | CGCG | 1 cut(s) | 681 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 396, 814, 851, 956 |
| NdeII | GATC | 4 cut(s) | 647, 826, 856, 1060 |
| NlaIII | CATG | 6 cut(s) | 236, 555, 849, 854, 910, 1012 |
| NlaIV | GGNNCC | 5 cut(s) | 6, 576, 828, 1062, 1110 |
| NmuCI | GTSAC | 3 cut(s) | 156, 656, 1013 |
| NsiI | ATGCAT | 1 cut(s) | 847 |
| NspI | RCATGY | 2 cut(s) | 236, 854 |
| PaeI | GCATGC | 2 cut(s) | 236, 854 |
| PagI | TCATGA | 1 cut(s) | 1008 |
| PciSI | GCTCTTC | 1 cut(s) | 1167 |
| PctI | GAATGC | 1 cut(s) | 896 |
| PdmI | GAANNNNTTC | 2 cut(s) | 196, 666 |
| PfeI | GAWTC | 4 cut(s) | 38, 75, 107, 1195 |
| PinAI | ACCGGT | 1 cut(s) | 68 |
| PkrI | GCNGC | 2 cut(s) | 175, 398 |
| PleI | GAGTC | 3 cut(s) | 66, 163, 907 |
| PpsI | GAGTC | 3 cut(s) | 66, 163, 907 |
| Ppu21I | YACGTR | 2 cut(s) | 467, 1218 |
| PpuMI | RGGWCCY | 1 cut(s) | 5 |
| PshBI | ATTAAT | 1 cut(s) | 293 |
| Psp5II | RGGWCCY | 1 cut(s) | 5 |
| Psp6I | CCWGG | 3 cut(s) | 26, 1053, 1111 |
| PspFI | CCCAGC | 1 cut(s) | 220 |
| PspGI | CCWGG | 3 cut(s) | 26, 1053, 1111 |
| PspN4I | GGNNCC | 5 cut(s) | 6, 576, 828, 1062, 1110 |
| PspPI | GGNCC | 5 cut(s) | 5, 273, 382, 457, 1051 |
| PspPPI | RGGWCCY | 1 cut(s) | 5 |
| PsuI | RGATCY | 3 cut(s) | 647, 826, 1060 |
| RsaI | GTAC | 2 cut(s) | 184, 626 |
| RsaNI | GTAC | 2 cut(s) | 183, 625 |
| RseI | CAYNNNNRTG | 1 cut(s) | 936 |
| SapI | GCTCTTC | 1 cut(s) | 1167 |
| SaqAI | TTAA | 4 cut(s) | 293, 822, 1020, 1041 |
| SatI | GCNGC | 2 cut(s) | 174, 397 |
| Sau3AI | GATC | 4 cut(s) | 647, 826, 856, 1060 |
| Sau96I | GGNCC | 5 cut(s) | 5, 273, 382, 457, 1051 |
| ScaI | AGTACT | 1 cut(s) | 184 |
| SchI | GAGTC | 3 cut(s) | 67, 164, 907 |
| ScrFI | CCNGG | 3 cut(s) | 28, 1055, 1113 |
| SduI | GDGCHC | 4 cut(s) | 563, 729, 952, 1179 |
| SfaNI | GCATC | 2 cut(s) | 102, 1135 |
| SinI | GGWCC | 3 cut(s) | 5, 457, 1051 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 936 |
| SmlI | CTYRAG | 2 cut(s) | 152, 809 |
| SmoI | CTYRAG | 2 cut(s) | 152, 809 |
| SnaBI | TACGTA | 1 cut(s) | 467 |
| SpeI | ACTAGT | 1 cut(s) | 638 |
| SphI | GCATGC | 2 cut(s) | 236, 854 |
| Sse9I | AATT | 9 cut(s) | 43, 133, 202, 245, 290, 294, 694, 1078, 1211 |
| SsiI | CCGC | 4 cut(s) | 174, 397, 681, 967 |
| SspI | AATATT | 1 cut(s) | 584 |
| SspMI | CTAG | 5 cut(s) | 639, 674, 899, 945, 1231 |
| StyD4I | CCNGG | 3 cut(s) | 26, 1053, 1111 |
| StyI | CCWWGG | 2 cut(s) | 116, 570 |
| TaaI | ACNGT | 5 cut(s) | 196, 325, 614, 629, 710 |
| TaiI | ACGT | 2 cut(s) | 469, 1220 |
| TasI | AATT | 9 cut(s) | 43, 133, 202, 245, 290, 294, 694, 1078, 1211 |
| TatI | WGTACW | 1 cut(s) | 182 |
| TauI | GCSGC | 2 cut(s) | 176, 399 |
| TfiI | GAWTC | 4 cut(s) | 38, 75, 107, 1195 |
| Tru1I | TTAA | 4 cut(s) | 293, 822, 1020, 1041 |
| Tru9I | TTAA | 4 cut(s) | 293, 822, 1020, 1041 |
| TseFI | GTSAC | 3 cut(s) | 156, 656, 1013 |
| Tsp45I | GTSAC | 3 cut(s) | 156, 656, 1013 |
| TspDTI | ATGAA | 4 cut(s) | 195, 537, 1172, 1176 |
| VpaK11BI | GGWCC | 3 cut(s) | 5, 457, 1051 |
| VspI | ATTAAT | 1 cut(s) | 293 |
| XapI | RAATTY | 5 cut(s) | 133, 202, 245, 1078, 1211 |
| XceI | RCATGY | 2 cut(s) | 236, 854 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 467 |
| XmiI | GTMKAC | 1 cut(s) | 1220 |
| XmnI | GAANNNNTTC | 2 cut(s) | 196, 666 |
| XspI | CTAG | 5 cut(s) | 639, 674, 899, 945, 1231 |
| ZrmI | AGTACT | 1 cut(s) | 184 |
| Zsp2I | ATGCAT | 1 cut(s) | 847 |