DNA annealing helicase and endonuclease
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G07810 |
| fragaria_vesca | FvH4_5g14341 FvH4_5g14341 FvH4_5g14341 FvH4_5g14341 |
| malus_domestica | MD14G1208200.v1.1 |
| prunus_persica | Prupe.5G200300_v2.0.a1 |
| pyrus_communis | pycom14g17190 pycom14g17200 |
| rosa_chinensis | RchiOBHm_Chr7g0182391 |
| rosa_laevigata | RLG00000005127 |
| rosa_multiflora | Rmu_co8327751.1_g000001 Rmu_sc0000003.1_g000001 Rmu_sc0034215.1_g000001 Rmu_sc0034216.1_g000001 Rmu_sc0037577.1_g000004 Rmu_sc0037929.1_g000001 Rmu_ssc0000034.1_g000003 |
| rosa_roxburghii | Rroxscaffold_3G00271270 |
| rosa_rugosa | Rorug06G0447100 |
| rosa_samantha | Rh7AG050500 Rh7BG050300 Rh7CG051800 Rh7CG051900 Rh7DG049600 |
| rosa_wichuraiana | Rw7G004130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 215 |
| AccBSI | CCGCTC | 1 cut(s) | 2781 |
| AccI | GTMKAC | 1 cut(s) | 917 |
| AccII | CGCG | 1 cut(s) | 1983 |
| AciI | CCGC | 6 cut(s) | 1868, 1981, 2779, 3010, 3188, 3611 |
| AclWI | GGATC | 9 cut(s) | 173, 1470, 2228, 2452, 2465, 3203, 3216, 3368, 3448 |
| AcoI | YGGCCR | 1 cut(s) | 2452 |
| AcsI | RAATTY | 3 cut(s) | 255, 2515, 2545 |
| AcuI | CTGAAG | 9 cut(s) | 77, 495, 1295, 1416, 1847, 2331, 2421, 2780, 3200 |
| AdeI | CACNNNGTG | 1 cut(s) | 3302 |
| AfaI | GTAC | 8 cut(s) | 297, 996, 1003, 1638, 1650, 1731, 2413, 3600 |
| AfeI | AGCGCT | 1 cut(s) | 815 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 183, 961, 1457, 1716, 2147, 2939, 3218, 3617 |
| AflII | CTTAAG | 1 cut(s) | 331 |
| AflIII | ACRYGT | 2 cut(s) | 1266, 1309 |
| AjnI | CCWGG | 7 cut(s) | 702, 717, 1141, 1203, 1314, 3496, 3613 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 599, 631 |
| Alw21I | GWGCWC | 3 cut(s) | 1882, 2309, 3111 |
| Alw26I | GTCTC | 5 cut(s) | 331, 505, 2048, 2122, 3413 |
| AlwI | GGATC | 9 cut(s) | 173, 1470, 2228, 2452, 2465, 3203, 3216, 3368, 3448 |
| Ama87I | CYCGRG | 1 cut(s) | 198 |
| Aor51HI | AGCGCT | 1 cut(s) | 815 |
| ApeKI | GCWGC | 8 cut(s) | 50, 97, 1052, 1391, 1470, 1483, 2151, 2555 |
| ApoI | RAATTY | 3 cut(s) | 255, 2515, 2545 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1078, 1110, 2335, 2367 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2382, 3048 |
| AspLEI | GCGC | 4 cut(s) | 816, 1068, 2778, 3506 |
| AspS9I | GGNCC | 3 cut(s) | 700, 2655, 2941 |
| AsuC2I | CCSGG | 7 cut(s) | 199, 200, 242, 266, 315, 1084, 1480 |
| AsuHPI | GGTGA | 9 cut(s) | 142, 920, 1072, 1619, 1839, 2120, 2387, 2449, 3281 |
| AsuII | TTCGAA | 1 cut(s) | 1687 |
| AsuNHI | GCTAGC | 1 cut(s) | 1516 |
| AvaI | CYCGRG | 1 cut(s) | 198 |
| BaeGI | GKGCMC | 2 cut(s) | 494, 1247 |
| BamHI | GGATCC | 2 cut(s) | 2457, 3208 |
| BanII | GRGCYC | 3 cut(s) | 967, 1882, 3564 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 744, 776 |
| BbsI | GAAGAC | 3 cut(s) | 1819, 2319, 2960 |
| Bbv12I | GWGCWC | 3 cut(s) | 1882, 2309, 3111 |
| BbvCI | CCTCAGC | 1 cut(s) | 2651 |
| BbvI | GCAGC | 8 cut(s) | 62, 109, 1064, 1378, 1457, 1495, 2138, 2542 |
| BceAI | ACGGC | 2 cut(s) | 278, 1090 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3140, 3174 |
| BciT130I | CCWGG | 7 cut(s) | 704, 719, 1143, 1205, 1316, 3498, 3615 |
| BciVI | GTATCC | 2 cut(s) | 537, 1927 |
| BcnI | CCSGG | 7 cut(s) | 199, 200, 242, 266, 315, 1084, 1480 |
| BcoDI | GTCTC | 5 cut(s) | 331, 505, 2048, 2122, 3413 |
| BfaI | CTAG | 7 cut(s) | 851, 897, 1023, 1517, 2417, 3056, 3281 |
| BfmI | CTRYAG | 4 cut(s) | 1471, 1557, 2121, 3428 |
| BfoI | RGCGCY | 3 cut(s) | 817, 2779, 3507 |
| BfrI | CTTAAG | 1 cut(s) | 331 |
| BfuI | GTATCC | 2 cut(s) | 537, 1927 |
| BglII | AGATCT | 4 cut(s) | 2066, 2216, 2974, 3029 |
| BisI | GCNGC | 9 cut(s) | 51, 98, 1053, 1392, 1471, 1484, 2152, 2556, 2779 |
| BlpI | GCTNAGC | 2 cut(s) | 46, 2155 |
| BlsI | GCNGC | 9 cut(s) | 52, 99, 1054, 1393, 1472, 1485, 2153, 2557, 2780 |
| BmcAI | AGTACT | 2 cut(s) | 1638, 2413 |
| BmeT110I | CYCGRG | 1 cut(s) | 198 |
| BmgT120I | GGNCC | 3 cut(s) | 700, 2655, 2941 |
| BmiI | GGNNCC | 4 cut(s) | 239, 2459, 3210, 3495 |
| BmrI | ACTGGG | 1 cut(s) | 281 |
| BmsI | GCATC | 9 cut(s) | 610, 1022, 1848, 2002, 2410, 2484, 2742, 3021, 3520 |
| BmtI | GCTAGC | 1 cut(s) | 1520 |
| BmuI | ACTGGG | 1 cut(s) | 281 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2265 |
| BpiI | GAAGAC | 3 cut(s) | 1819, 2319, 2960 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3551, 3583 |
| BpmI | CTGGAG | 2 cut(s) | 701, 1806 |
| Bpu10I | CCTNAGC | 3 cut(s) | 2160, 2651, 2883 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 46, 2155 |
| Bpu14I | TTCGAA | 1 cut(s) | 1687 |
| BpuEI | CTTGAG | 2 cut(s) | 1197, 2555 |
| BpuMI | CCSGG | 7 cut(s) | 199, 200, 242, 266, 315, 1084, 1480 |
| BsaAI | YACGTR | 1 cut(s) | 2849 |
| BsaI | GGTCTC | 1 cut(s) | 2122 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 158, 188, 328, 358, 1523, 1553, 3548, 3578 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 183, 961, 1457, 1716, 2147, 2939, 3218, 3617 |
| Bse1I | ACTGG | 6 cut(s) | 287, 1538, 1596, 2381, 2455, 3021 |
| Bse3DI | GCAATG | 2 cut(s) | 1047, 3229 |
| BseBI | CCWGG | 7 cut(s) | 704, 719, 1143, 1205, 1316, 3498, 3615 |
| BseGI | GGATG | 9 cut(s) | 368, 625, 1450, 1546, 1948, 2249, 3012, 3535, 3607 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 183, 961, 1457, 1716, 2147, 2939, 3218, 3617 |
| BseMI | GCAATG | 2 cut(s) | 1047, 3229 |
| BseMII | CTCAG | 9 cut(s) | 291, 410, 1602, 1743, 1856, 2493, 2642, 2897, 2952 |
| BseNI | ACTGG | 6 cut(s) | 287, 1538, 1596, 2381, 2455, 3021 |
| BseRI | GAGGAG | 3 cut(s) | 338, 1271, 3556 |
| BseSI | GKGCMC | 2 cut(s) | 494, 1247 |
| BseXI | GCAGC | 8 cut(s) | 62, 109, 1064, 1378, 1457, 1495, 2138, 2542 |
| BseYI | CCCAGC | 2 cut(s) | 775, 1150 |
| BsgI | GTGCAG | 1 cut(s) | 2205 |
| Bsh1236I | CGCG | 1 cut(s) | 1983 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1882, 2309, 3111 |
| BsiHKCI | CYCGRG | 1 cut(s) | 198 |
| BsiSI | CCGG | 7 cut(s) | 199, 241, 266, 314, 1083, 1479, 2455 |
| BslFI | GGGAC | 2 cut(s) | 1099, 2766 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 183, 961, 1457, 1716, 2147, 2939, 3218, 3617 |
| BsmAI | GTCTC | 5 cut(s) | 331, 505, 2048, 2122, 3413 |
| BsmFI | GGGAC | 2 cut(s) | 1099, 2766 |
| BsmI | GAATGC | 2 cut(s) | 2627, 3278 |
| Bso31I | GGTCTC | 1 cut(s) | 2122 |
| BsoBI | CYCGRG | 1 cut(s) | 198 |
| Bsp119I | TTCGAA | 1 cut(s) | 1687 |
| Bsp1286I | GDGCHC | 7 cut(s) | 494, 967, 1247, 1882, 2309, 3111, 3564 |
| Bsp1407I | TGTACA | 1 cut(s) | 1001 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 46, 2155 |
| Bsp19I | CCATGG | 1 cut(s) | 110 |
| BspACI | CCGC | 6 cut(s) | 1868, 1981, 2779, 3010, 3188, 3611 |
| BspCNI | CTCAG | 9 cut(s) | 290, 411, 1601, 1744, 1855, 2492, 2643, 2896, 2953 |
| BspFNI | CGCG | 1 cut(s) | 1983 |
| BspHI | TCATGA | 3 cut(s) | 744, 1287, 3390 |
| BspLI | GGNNCC | 4 cut(s) | 239, 2459, 3210, 3495 |
| BspMAI | CTGCAG | 3 cut(s) | 1475, 1561, 2125 |
| BspOI | GCTAGC | 1 cut(s) | 1520 |
| BspPI | GGATC | 9 cut(s) | 173, 1470, 2228, 2452, 2465, 3203, 3216, 3368, 3448 |
| BspQI | GCTCTTC | 2 cut(s) | 9, 125 |
| BspT104I | TTCGAA | 1 cut(s) | 1687 |
| BspTI | CTTAAG | 1 cut(s) | 331 |
| BspTNI | GGTCTC | 1 cut(s) | 2122 |
| BsrBI | CCGCTC | 1 cut(s) | 2781 |
| BsrDI | GCAATG | 2 cut(s) | 1047, 3229 |
| BsrGI | TGTACA | 1 cut(s) | 1001 |
| BsrI | ACTGG | 6 cut(s) | 287, 1538, 1596, 2381, 2455, 3021 |
| BssNAI | GTATAC | 1 cut(s) | 918 |
| BssT1I | CCWWGG | 5 cut(s) | 54, 110, 182, 485, 2498 |
| Bst1107I | GTATAC | 1 cut(s) | 918 |
| Bst2UI | CCWGG | 7 cut(s) | 704, 719, 1143, 1205, 1316, 3498, 3615 |
| Bst6I | CTCTTC | 4 cut(s) | 9, 125, 471, 3039 |
| BstAFI | CTTAAG | 1 cut(s) | 331 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1391 |
| BstAUI | TGTACA | 1 cut(s) | 1001 |
| BstBAI | YACGTR | 1 cut(s) | 2849 |
| BstBI | TTCGAA | 1 cut(s) | 1687 |
| BstC8I | GCNNGC | 9 cut(s) | 736, 818, 833, 837, 947, 1518, 2774, 3234, 3278 |
| BstDSI | CCRYGG | 2 cut(s) | 110, 3164 |
| BstF5I | GGATG | 9 cut(s) | 368, 625, 1450, 1546, 1948, 2249, 3012, 3535, 3607 |
| BstFNI | CGCG | 1 cut(s) | 1983 |
| BstH2I | RGCGCY | 3 cut(s) | 817, 2779, 3507 |
| BstHHI | GCGC | 4 cut(s) | 816, 1068, 2778, 3506 |
| BstMAI | GTCTC | 5 cut(s) | 331, 505, 2048, 2122, 3413 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 462, 1147, 1391, 1517, 2624, 2724, 2778, 3196, 3233 |
| BstNI | CCWGG | 7 cut(s) | 704, 719, 1143, 1205, 1316, 3498, 3615 |
| BstNSI | RCATGY | 6 cut(s) | 738, 949, 1270, 1313, 1823, 3236 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2265 |
| BstSFI | CTRYAG | 4 cut(s) | 1471, 1557, 2121, 3428 |
| BstSLI | GKGCMC | 2 cut(s) | 494, 1247 |
| BstSNI | TACGTA | 1 cut(s) | 2849 |
| BstUI | CGCG | 1 cut(s) | 1983 |
| BstV1I | GCAGC | 8 cut(s) | 62, 109, 1064, 1378, 1457, 1495, 2138, 2542 |
| BstV2I | GAAGAC | 3 cut(s) | 1819, 2319, 2960 |
| BstX2I | RGATCY | 8 cut(s) | 1475, 2066, 2216, 2457, 2974, 3029, 3208, 3453 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2450 |
| BstYI | RGATCY | 8 cut(s) | 1475, 2066, 2216, 2457, 2974, 3029, 3208, 3453 |
| BstZ17I | GTATAC | 1 cut(s) | 918 |
| BsuI | GTATCC | 2 cut(s) | 537, 1927 |
| BtgI | CCRYGG | 2 cut(s) | 110, 3164 |
| BtsCI | GGATG | 9 cut(s) | 368, 625, 1450, 1546, 1948, 2249, 3012, 3535, 3607 |
| BtsI | GCAGTG | 1 cut(s) | 1554 |
| BtsIMutI | CAGTG | 5 cut(s) | 166, 471, 1554, 2307, 2448 |
| Cac8I | GCNNGC | 9 cut(s) | 736, 818, 833, 837, 947, 1518, 2774, 3234, 3278 |
| CciI | TCATGA | 3 cut(s) | 744, 1287, 3390 |
| CfoI | GCGC | 4 cut(s) | 816, 1068, 2778, 3506 |
| Cfr13I | GGNCC | 3 cut(s) | 700, 2655, 2941 |
| Cfr9I | CCCGGG | 1 cut(s) | 198 |
| Csp6I | GTAC | 8 cut(s) | 296, 995, 1002, 1637, 1649, 1730, 2412, 3599 |
| CviQI | GTAC | 8 cut(s) | 296, 995, 1002, 1637, 1649, 1730, 2412, 3599 |
| DraI | TTTAAA | 1 cut(s) | 885 |
| DraIII | CACNNNGTG | 1 cut(s) | 3302 |
| EaeI | YGGCCR | 1 cut(s) | 2452 |
| Eam1104I | CTCTTC | 4 cut(s) | 9, 125, 471, 3039 |
| EarI | CTCTTC | 4 cut(s) | 9, 125, 471, 3039 |
| EciI | GGCGGA | 2 cut(s) | 1883, 3600 |
| Ecl136II | GAGCTC | 1 cut(s) | 1880 |
| Eco105I | TACGTA | 1 cut(s) | 2849 |
| Eco130I | CCWWGG | 5 cut(s) | 54, 110, 182, 485, 2498 |
| Eco147I | AGGCCT | 1 cut(s) | 404 |
| Eco24I | GRGCYC | 3 cut(s) | 967, 1882, 3564 |
| Eco31I | GGTCTC | 1 cut(s) | 2122 |
| Eco47III | AGCGCT | 1 cut(s) | 815 |
| Eco53kI | GAGCTC | 1 cut(s) | 1880 |
| Eco57I | CTGAAG | 9 cut(s) | 77, 495, 1295, 1416, 1847, 2331, 2421, 2780, 3200 |
| Eco88I | CYCGRG | 1 cut(s) | 198 |
| EcoICRI | GAGCTC | 1 cut(s) | 1880 |
| EcoRII | CCWGG | 7 cut(s) | 702, 717, 1141, 1203, 1314, 3496, 3613 |
| EcoT14I | CCWWGG | 5 cut(s) | 54, 110, 182, 485, 2498 |
| EcoT22I | ATGCAT | 1 cut(s) | 2477 |
| EcoT38I | GRGCYC | 3 cut(s) | 967, 1882, 3564 |
| ErhI | CCWWGG | 5 cut(s) | 54, 110, 182, 485, 2498 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1026, 1058, 1154, 1186, 2607, 2639 |
| FaqI | GGGAC | 2 cut(s) | 1099, 2766 |
| FauNDI | CATATG | 2 cut(s) | 1661, 2185 |
| FblI | GTMKAC | 1 cut(s) | 917 |
| Fnu4HI | GCNGC | 9 cut(s) | 51, 98, 1053, 1392, 1471, 1484, 2152, 2556, 2779 |
| FokI | GGATG | 9 cut(s) | 355, 632, 1457, 1533, 1955, 2236, 2999, 3542, 3594 |
| FriOI | GRGCYC | 3 cut(s) | 967, 1882, 3564 |
| Fsp4HI | GCNGC | 9 cut(s) | 51, 98, 1053, 1392, 1471, 1484, 2152, 2556, 2779 |
| FspBI | CTAG | 7 cut(s) | 851, 897, 1023, 1517, 2417, 3056, 3281 |
| GlaI | GCGC | 4 cut(s) | 815, 1067, 2777, 3505 |
| GluI | GCNGC | 9 cut(s) | 51, 98, 1053, 1392, 1471, 1484, 2152, 2556, 2779 |
| GsaI | CCCAGC | 2 cut(s) | 779, 1154 |
| GsuI | CTGGAG | 2 cut(s) | 701, 1806 |
| HaeII | RGCGCY | 3 cut(s) | 817, 2779, 3507 |
| HapII | CCGG | 7 cut(s) | 199, 241, 266, 314, 1083, 1479, 2455 |
| HhaI | GCGC | 4 cut(s) | 816, 1068, 2778, 3506 |
| Hin6I | GCGC | 4 cut(s) | 814, 1066, 2776, 3504 |
| HinP1I | GCGC | 4 cut(s) | 814, 1066, 2776, 3504 |
| HincII | GTYRAC | 4 cut(s) | 205, 1909, 2354, 2703 |
| HindII | GTYRAC | 4 cut(s) | 205, 1909, 2354, 2703 |
| HindIII | AAGCTT | 1 cut(s) | 1960 |
| HpaII | CCGG | 7 cut(s) | 199, 241, 266, 314, 1083, 1479, 2455 |
| HphI | GGTGA | 9 cut(s) | 142, 920, 1072, 1619, 1839, 2120, 2387, 2449, 3281 |
| Hpy99I | CGWCG | 1 cut(s) | 695 |
| HpyAV | CCTTC | 9 cut(s) | 746, 1101, 1234, 1297, 1501, 2587, 2723, 2755, 3132 |
| HpyCH4IV | ACGT | 4 cut(s) | 159, 676, 1297, 2848 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 462, 1147, 1391, 1517, 2624, 2724, 2778, 3196, 3233 |
| HpySE526I | ACGT | 4 cut(s) | 159, 676, 1297, 2848 |
| HspAI | GCGC | 4 cut(s) | 814, 1066, 2776, 3504 |
| LguI | GCTCTTC | 2 cut(s) | 9, 125 |
| LmnI | GCTCC | 6 cut(s) | 266, 453, 1834, 3106, 3501, 3620 |
| Lsp1109I | GCAGC | 8 cut(s) | 62, 109, 1064, 1378, 1457, 1495, 2138, 2542 |
| LweI | GCATC | 9 cut(s) | 610, 1022, 1848, 2002, 2410, 2484, 2742, 3021, 3520 |
| MaeI | CTAG | 7 cut(s) | 851, 897, 1023, 1517, 2417, 3056, 3281 |
| MaeII | ACGT | 4 cut(s) | 159, 676, 1297, 2848 |
| MbiI | CCGCTC | 1 cut(s) | 2781 |
| MfeI | CAATTG | 1 cut(s) | 224 |
| MflI | RGATCY | 8 cut(s) | 1475, 2066, 2216, 2457, 2974, 3029, 3208, 3453 |
| MhlI | GDGCHC | 7 cut(s) | 494, 967, 1247, 1882, 2309, 3111, 3564 |
| MlyI | GAGTC | 3 cut(s) | 1571, 1580, 1955 |
| MmeI | TCCRAC | 2 cut(s) | 661, 3236 |
| Mph1103I | ATGCAT | 1 cut(s) | 2477 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2382, 3048 |
| MslI | CAYNNNNRTG | 4 cut(s) | 393, 1443, 3318, 3528 |
| MspA1I | CMGCKG | 1 cut(s) | 1727 |
| MspCI | CTTAAG | 1 cut(s) | 331 |
| MspI | CCGG | 7 cut(s) | 199, 241, 266, 314, 1083, 1479, 2455 |
| MunI | CAATTG | 1 cut(s) | 224 |
| Mva1269I | GAATGC | 2 cut(s) | 2627, 3278 |
| MvaI | CCWGG | 7 cut(s) | 704, 719, 1143, 1205, 1316, 3498, 3615 |
| MvnI | CGCG | 1 cut(s) | 1983 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 462, 1147, 1391, 1517, 2624, 2724, 2778, 3196, 3233 |
| NciI | CCSGG | 7 cut(s) | 199, 200, 242, 266, 315, 1084, 1480 |
| NcoI | CCATGG | 1 cut(s) | 110 |
| NdeI | CATATG | 2 cut(s) | 1661, 2185 |
| NheI | GCTAGC | 1 cut(s) | 1516 |
| NlaIV | GGNNCC | 4 cut(s) | 239, 2459, 3210, 3495 |
| NmuCI | GTSAC | 7 cut(s) | 160, 860, 1414, 1529, 1845, 1947, 2197 |
| NsiI | ATGCAT | 1 cut(s) | 2477 |
| NspI | RCATGY | 6 cut(s) | 738, 949, 1270, 1313, 1823, 3236 |
| NspV | TTCGAA | 1 cut(s) | 1687 |
| PaeI | GCATGC | 3 cut(s) | 738, 949, 3236 |
| PagI | TCATGA | 3 cut(s) | 744, 1287, 3390 |
| PceI | AGGCCT | 1 cut(s) | 404 |
| PciI | ACATGT | 2 cut(s) | 1266, 1309 |
| PciSI | GCTCTTC | 2 cut(s) | 9, 125 |
| PctI | GAATGC | 2 cut(s) | 2627, 3278 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2382, 3048 |
| PfeI | GAWTC | 7 cut(s) | 80, 269, 610, 983, 1592, 2489, 3520 |
| PflFI | GACNNNGTC | 1 cut(s) | 678 |
| PfoI | TCCNGGA | 1 cut(s) | 1082 |
| PkrI | GCNGC | 9 cut(s) | 52, 99, 1054, 1393, 1472, 1485, 2153, 2557, 2780 |
| PleI | GAGTC | 3 cut(s) | 1570, 1580, 1954 |
| PpsI | GAGTC | 3 cut(s) | 1570, 1580, 1954 |
| Ppu21I | YACGTR | 1 cut(s) | 2849 |
| PscI | ACATGT | 2 cut(s) | 1266, 1309 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2265 |
| PsiI | TTATAA | 1 cut(s) | 215 |
| Psp124BI | GAGCTC | 1 cut(s) | 1882 |
| Psp6I | CCWGG | 7 cut(s) | 702, 717, 1141, 1203, 1314, 3496, 3613 |
| PspFI | CCCAGC | 2 cut(s) | 775, 1150 |
| PspGI | CCWGG | 7 cut(s) | 702, 717, 1141, 1203, 1314, 3496, 3613 |
| PspN4I | GGNNCC | 4 cut(s) | 239, 2459, 3210, 3495 |
| PspPI | GGNCC | 3 cut(s) | 700, 2655, 2941 |
| PstI | CTGCAG | 3 cut(s) | 1475, 1561, 2125 |
| PsuI | RGATCY | 8 cut(s) | 1475, 2066, 2216, 2457, 2974, 3029, 3208, 3453 |
| PsyI | GACNNNGTC | 1 cut(s) | 678 |
| PvuII | CAGCTG | 1 cut(s) | 1727 |
| RsaI | GTAC | 8 cut(s) | 297, 996, 1003, 1638, 1650, 1731, 2413, 3600 |
| RsaNI | GTAC | 8 cut(s) | 296, 995, 1002, 1637, 1649, 1730, 2412, 3599 |
| RseI | CAYNNNNRTG | 4 cut(s) | 393, 1443, 3318, 3528 |
| SacI | GAGCTC | 1 cut(s) | 1882 |
| SapI | GCTCTTC | 2 cut(s) | 9, 125 |
| SatI | GCNGC | 9 cut(s) | 51, 98, 1053, 1392, 1471, 1484, 2152, 2556, 2779 |
| Sau96I | GGNCC | 3 cut(s) | 700, 2655, 2941 |
| ScaI | AGTACT | 2 cut(s) | 1638, 2413 |
| SchI | GAGTC | 3 cut(s) | 1571, 1580, 1955 |
| SduI | GDGCHC | 7 cut(s) | 494, 967, 1247, 1882, 2309, 3111, 3564 |
| SfaNI | GCATC | 9 cut(s) | 610, 1022, 1848, 2002, 2410, 2484, 2742, 3021, 3520 |
| SfcI | CTRYAG | 4 cut(s) | 1471, 1557, 2121, 3428 |
| SfuI | TTCGAA | 1 cut(s) | 1687 |
| SmaI | CCCGGG | 1 cut(s) | 200 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 393, 1443, 3318, 3528 |
| SmlI | CTYRAG | 3 cut(s) | 331, 1212, 2534 |
| SmoI | CTYRAG | 3 cut(s) | 331, 1212, 2534 |
| SnaBI | TACGTA | 1 cut(s) | 2849 |
| SphI | GCATGC | 3 cut(s) | 738, 949, 3236 |
| SseBI | AGGCCT | 1 cut(s) | 404 |
| SsiI | CCGC | 6 cut(s) | 1868, 1981, 2779, 3010, 3188, 3611 |
| SspI | AATATT | 1 cut(s) | 1617 |
| SspMI | CTAG | 7 cut(s) | 851, 897, 1023, 1517, 2417, 3056, 3281 |
| SstI | GAGCTC | 1 cut(s) | 1882 |
| StuI | AGGCCT | 1 cut(s) | 404 |
| StyI | CCWWGG | 5 cut(s) | 54, 110, 182, 485, 2498 |
| TaiI | ACGT | 4 cut(s) | 162, 679, 1300, 2851 |
| TaqI | TCGA | 7 cut(s) | 252, 1238, 1687, 2661, 3150, 3259, 3569 |
| TaqII | GACCGA | 1 cut(s) | 969 |
| TatI | WGTACW | 5 cut(s) | 1001, 1636, 1648, 2411, 3598 |
| TauI | GCSGC | 1 cut(s) | 2781 |
| TfiI | GAWTC | 7 cut(s) | 80, 269, 610, 983, 1592, 2489, 3520 |
| TscAI | CASTG | 5 cut(s) | 173, 478, 1561, 2314, 2455 |
| TseFI | GTSAC | 7 cut(s) | 160, 860, 1414, 1529, 1845, 1947, 2197 |
| TseI | GCWGC | 8 cut(s) | 50, 97, 1052, 1391, 1470, 1483, 2151, 2555 |
| Tsp45I | GTSAC | 7 cut(s) | 160, 860, 1414, 1529, 1845, 1947, 2197 |
| TspGWI | ACGGA | 2 cut(s) | 2016, 2688 |
| TspMI | CCCGGG | 1 cut(s) | 198 |
| TspRI | CASTG | 5 cut(s) | 173, 478, 1561, 2314, 2455 |
| Tth111I | GACNNNGTC | 1 cut(s) | 678 |
| Vha464I | CTTAAG | 1 cut(s) | 331 |
| XapI | RAATTY | 3 cut(s) | 255, 2515, 2545 |
| XbaI | TCTAGA | 1 cut(s) | 2416 |
| XceI | RCATGY | 6 cut(s) | 738, 949, 1270, 1313, 1823, 3236 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 854, 2849 |
| XmaI | CCCGGG | 1 cut(s) | 198 |
| XmiI | GTMKAC | 1 cut(s) | 917 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2382, 3048 |
| XspI | CTAG | 7 cut(s) | 851, 897, 1023, 1517, 2417, 3056, 3281 |
| ZrmI | AGTACT | 2 cut(s) | 1638, 2413 |
| Zsp2I | ATGCAT | 1 cut(s) | 2477 |