Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037929.1

Orthogroup ID

OG0006789

Physical Location & Seq

Genomic Coordinates Reverse (-)

1150 .. 2333

Gene Structure 1184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037929.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atggaaatcaccgaagaacagcgaaagcgagccgaggcgaatcgattggctgccttagcaaaacgcaaagccctcgccgaaacctccaatcttcaacaacaacacgatccgtggtcgcttttcaaatgccaaaaggtctctccggacctcaatccgagctcaattcgctgcgcccgcgatccaagatccggaatttcacgggttagcccggttgtggagaatcagatgttccgggtcaggctcgaaatctgctcgccggactcgttctcagccaccccggttgccgttcaagggtttaaatttccggggcgggaagagtgcgtaaggagaatgagtgattgcttggctggtgtaatgccatcccactacacgcaaaatcacagtggtggaaaggctggtgtttataagctgagtgagtacaaagaagtcttgaaatgtttaaggagcaacaagggcattgacattgaagagataccttggactactttccatgttgtagacagactttcacagtcatatatcacagggaagtgggtaccatgcaggccagaacacttgttggatgataaggttgatgagttgatcgggaagctgccaaagaggctattggattcactcttacctttccagcttgagggtgttagatttggtttgcaaaggggcggacgatgtcttattgcagatgaaatgggcctcggaaagacactgcaggtagttttatgtcaagtaacttttcaattcttattgatggcgctaggattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000228 GO:0000733 GO:0003674 GO:0003676 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0017111 GO:0019219 GO:0019222 GO:0031297 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031593 GO:0031974 GO:0031981 GO:0032392 GO:0033554 GO:0034641 GO:0034645 GO:0036292 GO:0036310 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045005 GO:0045910 GO:0045934 GO:0046483 GO:0048478 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070530 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090329 GO:0097159 GO:0097617 GO:0140030 GO:0140097 GO:1901360 GO:1901363 GO:1901576 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HNH Helicase_C SNF2_N

Protein Analysis

254

Amino Acids

28.66

Weight (kDa)

8.96

Isoelectric Point (pI)

53.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07810
fragaria_vesca	FvH4_5g14341 FvH4_5g14341 FvH4_5g14341 FvH4_5g14341
malus_domestica	MD14G1208200.v1.1
prunus_persica	Prupe.5G200300_v2.0.a1
pyrus_communis	pycom14g17190 pycom14g17200
rosa_chinensis	RchiOBHm_Chr7g0182391
rosa_laevigata	RLG00000005127
rosa_multiflora	Rmu_co8327751.1_g000001 Rmu_sc0000003.1_g000001 Rmu_sc0034215.1_g000001 Rmu_sc0034216.1_g000001 Rmu_sc0037577.1_g000004 Rmu_sc0037929.1_g000001 Rmu_ssc0000034.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271270
rosa_rugosa	Rorug06G0447100
rosa_samantha	Rh7AG050500 Rh7BG050300 Rh7CG051800 Rh7CG051900 Rh7DG049600
rosa_wichuraiana	Rw7G004130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	405
Acc36I	ACCTGC	1 cut(s)	700
Acc65I	GGTACC	1 cut(s)	535
AccB1I	GGYRCC	1 cut(s)	535
AccI	GTMKAC	1 cut(s)	498
AccII	CGCG	1 cut(s)	177
AccIII	TCCGGA	2 cut(s)	142, 188
AciI	CCGC	3 cut(s)	175, 310, 663
AclWI	GGATC	3 cut(s)	101, 173, 180
AcsI	RAATTY	2 cut(s)	192, 299
AfaI	GTAC	2 cut(s)	419, 537
AfiI	CCNNNNNNNGG	4 cut(s)	188, 214, 291, 634
AgsI	TTSAA	6 cut(s)	95, 124, 290, 433, 467, 737
AleI	CACNNNNGTG	1 cut(s)	384
AluBI	AGCT	4 cut(s)	159, 409, 592, 631
AluI	AGCT	4 cut(s)	159, 409, 592, 631
Alw21I	GWGCWC	1 cut(s)	161
Alw26I	GTCTC	1 cut(s)	142
AlwI	GGATC	3 cut(s)	101, 173, 180
Aor13HI	TCCGGA	2 cut(s)	142, 188
AoxI	GGCC	2 cut(s)	545, 691
ApeKI	GCWGC	3 cut(s)	50, 168, 592
ApoI	RAATTY	2 cut(s)	192, 299
Asp718I	GGTACC	1 cut(s)	535
AspLEI	GCGC	2 cut(s)	173, 754
AspS9I	GGNCC	2 cut(s)	145, 691
AsuC2I	CCSGG	4 cut(s)	209, 233, 278, 306
AvaII	GGWCC	1 cut(s)	145
BanI	GGYRCC	1 cut(s)	535
BanII	GRGCYC	1 cut(s)	161
Bbv12I	GWGCWC	1 cut(s)	161
BbvI	GCAGC	3 cut(s)	37, 155, 579
BccI	CCATC	2 cut(s)	367, 742
BceAI	ACGGC	1 cut(s)	269
BcgI	CGANNNNNNTGC	2 cut(s)	55, 89
BcnI	CCSGG	4 cut(s)	209, 233, 278, 306
BcoDI	GTCTC	1 cut(s)	142
BfaI	CTAG	1 cut(s)	755
BfmI	CTRYAG	1 cut(s)	707
BfoI	RGCGCY	1 cut(s)	755
BfuAI	ACCTGC	1 cut(s)	700
BglI	GCCNNNNNGGC	1 cut(s)	601
BisI	GCNGC	3 cut(s)	51, 169, 593
BlsI	GCNGC	3 cut(s)	52, 170, 594
Bme1390I	CCNGG	4 cut(s)	209, 233, 278, 306
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	2 cut(s)	145, 691
BmiI	GGNNCC	1 cut(s)	537
BmrFI	CCNGG	4 cut(s)	209, 233, 278, 306
Bpu10I	CCTNAGC	1 cut(s)	55
BpuEI	CTTGAG	1 cut(s)	653
BpuMI	CCSGG	4 cut(s)	209, 233, 278, 306
Bsa29I	ATCGAT	1 cut(s)	43
BsaI	GGTCTC	1 cut(s)	142
BsaJI	CCNNGG	6 cut(s)	33, 110, 276, 305, 476, 694
BsaWI	WCCGGW	2 cut(s)	142, 188
BsaXI	ACNNNNNCTCC	2 cut(s)	319, 349
Bsc4I	CCNNNNNNNGG	4 cut(s)	188, 214, 291, 634
BseAI	TCCGGA	2 cut(s)	142, 188
BseCI	ATCGAT	1 cut(s)	43
BseDI	CCNNGG	6 cut(s)	33, 110, 276, 305, 476, 694
BseGI	GGATG	2 cut(s)	359, 568
BseLI	CCNNNNNNNGG	4 cut(s)	188, 214, 291, 634
BseMII	CTCAG	2 cut(s)	282, 401
BseXI	GCAGC	3 cut(s)	37, 155, 579
Bsh1236I	CGCG	1 cut(s)	177
BshFI	GGCC	2 cut(s)	547, 693
BshNI	GGYRCC	1 cut(s)	535
BshVI	ATCGAT	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	161
BsiSI	CCGG	7 cut(s)	143, 189, 209, 232, 257, 278, 305
BslI	CCNNNNNNNGG	4 cut(s)	188, 214, 291, 634
BsmAI	GTCTC	1 cut(s)	142
BsnI	GGCC	2 cut(s)	547, 693
Bso31I	GGTCTC	1 cut(s)	142
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp13I	TCCGGA	2 cut(s)	142, 188
Bsp143I	GATC	4 cut(s)	106, 178, 185, 582
BspACI	CCGC	3 cut(s)	175, 310, 663
BspANI	GGCC	2 cut(s)	547, 693
BspCNI	CTCAG	2 cut(s)	281, 402
BspDI	ATCGAT	1 cut(s)	43
BspEI	TCCGGA	2 cut(s)	142, 188
BspFNI	CGCG	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	537
BspMAI	CTGCAG	1 cut(s)	711
BspMI	ACCTGC	1 cut(s)	700
BspPI	GGATC	3 cut(s)	101, 173, 180
BspT107I	GGYRCC	1 cut(s)	535
BspTNI	GGTCTC	1 cut(s)	142
BssECI	CCNNGG	6 cut(s)	33, 110, 276, 305, 476, 694
BssMI	GATC	4 cut(s)	106, 178, 185, 582
BssT1I	CCWWGG	1 cut(s)	476
Bst4CI	ACNGT	2 cut(s)	383, 513
Bst6I	CTCTTC	2 cut(s)	309, 462
BstC8I	GCNNGC	4 cut(s)	30, 175, 254, 545
BstDEI	CTNAG	3 cut(s)	55, 268, 410
BstDSI	CCRYGG	1 cut(s)	110
BstF5I	GGATG	2 cut(s)	359, 568
BstFNI	CGCG	1 cut(s)	177
BstH2I	RGCGCY	1 cut(s)	755
BstHHI	GCGC	2 cut(s)	173, 754
BstKTI	GATC	4 cut(s)	109, 181, 188, 585
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	4 cut(s)	106, 178, 185, 582
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 165, 174, 453, 601
BstSCI	CCNGG	4 cut(s)	207, 231, 276, 304
BstSFI	CTRYAG	1 cut(s)	707
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	3 cut(s)	37, 155, 579
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
Bsu15I	ATCGAT	1 cut(s)	43
BsuRI	GGCC	2 cut(s)	547, 693
BsuTUI	ATCGAT	1 cut(s)	43
BtgI	CCRYGG	1 cut(s)	110
BtsCI	GGATG	2 cut(s)	359, 568
BtsI	GCAGTG	1 cut(s)	704
BtsIMutI	CAGTG	2 cut(s)	388, 704
BveI	ACCTGC	1 cut(s)	700
Cac8I	GCNNGC	4 cut(s)	30, 175, 254, 545
CfoI	GCGC	2 cut(s)	173, 754
Cfr13I	GGNCC	2 cut(s)	145, 691
ClaI	ATCGAT	1 cut(s)	43
Csp6I	GTAC	2 cut(s)	418, 536
CspCI	CAANNNNNGTGG	2 cut(s)	262, 297
CviAII	CATG	2 cut(s)	491, 540
CviQI	GTAC	2 cut(s)	418, 536
DdeI	CTNAG	3 cut(s)	55, 268, 410
DpnI	GATC	4 cut(s)	108, 180, 187, 584
DpnII	GATC	4 cut(s)	106, 178, 185, 582
DraI	TTTAAA	1 cut(s)	298
Eam1104I	CTCTTC	2 cut(s)	309, 462
EarI	CTCTTC	2 cut(s)	309, 462
EciI	GGCGGA	1 cut(s)	678
Ecl136II	GAGCTC	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	476
Eco24I	GRGCYC	1 cut(s)	161
Eco31I	GGTCTC	1 cut(s)	142
Eco47I	GGWCC	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	159
EcoICRI	GAGCTC	1 cut(s)	159
EcoT14I	CCWWGG	1 cut(s)	476
EcoT38I	GRGCYC	1 cut(s)	161
ErhI	CCWWGG	1 cut(s)	476
FaeI	CATG	2 cut(s)	494, 543
FaiI	YATR	6 cut(s)	405, 492, 517, 519, 541, 721
FatI	CATG	2 cut(s)	490, 539
FauI	CCCGC	2 cut(s)	182, 303
FblI	GTMKAC	1 cut(s)	498
Fnu4HI	GCNGC	3 cut(s)	51, 169, 593
FokI	GGATG	2 cut(s)	346, 575
FriOI	GRGCYC	1 cut(s)	161
Fsp4HI	GCNGC	3 cut(s)	51, 169, 593
FspBI	CTAG	1 cut(s)	755
GlaI	GCGC	2 cut(s)	172, 753
GluI	GCNGC	3 cut(s)	51, 169, 593
HaeII	RGCGCY	1 cut(s)	755
HaeIII	GGCC	2 cut(s)	547, 693
HapII	CCGG	7 cut(s)	143, 189, 209, 232, 257, 278, 305
HhaI	GCGC	2 cut(s)	173, 754
Hin1II	CATG	2 cut(s)	494, 543
Hin6I	GCGC	2 cut(s)	171, 752
HinP1I	GCGC	2 cut(s)	171, 752
HinfI	GANTC	4 cut(s)	40, 220, 260, 611
HpaII	CCGG	7 cut(s)	143, 189, 209, 232, 257, 278, 305
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188I	TCNGA	3 cut(s)	156, 225, 698
Hpy188III	TCNNGA	4 cut(s)	143, 189, 430, 586
Hpy8I	GTNNAC	1 cut(s)	499
HpyCH4III	ACNGT	2 cut(s)	383, 513
HpyCH4V	TGCA	4 cut(s)	543, 655, 680, 709
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 165, 174, 453, 601
HpyF3I	CTNAG	3 cut(s)	55, 268, 410
Hsp92II	CATG	2 cut(s)	494, 543
HspAI	GCGC	2 cut(s)	171, 752
Kpn2I	TCCGGA	2 cut(s)	142, 188
KpnI	GGTACC	1 cut(s)	539
Kzo9I	GATC	4 cut(s)	106, 178, 185, 582
LmnI	GCTCC	1 cut(s)	444
Lsp1109I	GCAGC	3 cut(s)	37, 155, 579
MaeI	CTAG	1 cut(s)	755
MaeIII	GTNAC	1 cut(s)	727
MalI	GATC	4 cut(s)	108, 180, 187, 584
MboI	GATC	4 cut(s)	106, 178, 185, 582
MboII	GAAGA	4 cut(s)	26, 83, 326, 479
MflI	RGATCY	1 cut(s)	185
MhlI	GDGCHC	1 cut(s)	161
MluCI	AATT	4 cut(s)	162, 192, 299, 737
MlyI	GAGTC	1 cut(s)	254
MmeI	TCCRAC	1 cut(s)	540
MnlI	CCTC	7 cut(s)	28, 83, 94, 158, 594, 628, 704
MroI	TCCGGA	2 cut(s)	142, 188
MseI	TTAA	2 cut(s)	297, 440
MslI	CAYNNNNRTG	1 cut(s)	384
MspI	CCGG	7 cut(s)	143, 189, 209, 232, 257, 278, 305
MspR9I	CCNGG	4 cut(s)	209, 233, 278, 306
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	5 cut(s)	56, 165, 174, 453, 601
NciI	CCSGG	4 cut(s)	209, 233, 278, 306
NdeII	GATC	4 cut(s)	106, 178, 185, 582
NlaIII	CATG	2 cut(s)	494, 543
NlaIV	GGNNCC	1 cut(s)	537
NmeAIII	GCCGAG	1 cut(s)	58
OliI	CACNNNNGTG	1 cut(s)	384
PcsI	WCGNNNNNNNCGW	1 cut(s)	260
PfeI	GAWTC	3 cut(s)	40, 220, 611
PflFI	GACNNNGTC	1 cut(s)	669
PkrI	GCNGC	3 cut(s)	52, 170, 594
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
PsiI	TTATAA	1 cut(s)	405
Psp124BI	GAGCTC	1 cut(s)	161
PspN4I	GGNNCC	1 cut(s)	537
PspPI	GGNCC	2 cut(s)	145, 691
PstI	CTGCAG	1 cut(s)	711
PsuI	RGATCY	1 cut(s)	185
PsyI	GACNNNGTC	1 cut(s)	669
RsaI	GTAC	2 cut(s)	419, 537
RsaNI	GTAC	2 cut(s)	418, 536
RseI	CAYNNNNRTG	1 cut(s)	384
SacI	GAGCTC	1 cut(s)	161
SaqAI	TTAA	2 cut(s)	297, 440
SatI	GCNGC	3 cut(s)	51, 169, 593
Sau3AI	GATC	4 cut(s)	106, 178, 185, 582
Sau96I	GGNCC	2 cut(s)	145, 691
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	4 cut(s)	209, 233, 278, 306
SduI	GDGCHC	1 cut(s)	161
SfcI	CTRYAG	1 cut(s)	707
SinI	GGWCC	1 cut(s)	145
SmiMI	CAYNNNNRTG	1 cut(s)	384
SmlI	CTYRAG	1 cut(s)	632
SmoI	CTYRAG	1 cut(s)	632
Sse9I	AATT	4 cut(s)	162, 192, 299, 737
SsiI	CCGC	3 cut(s)	175, 310, 663
SspMI	CTAG	1 cut(s)	755
SstI	GAGCTC	1 cut(s)	161
StyD4I	CCNGG	4 cut(s)	207, 231, 276, 304
StyI	CCWWGG	1 cut(s)	476
TaaI	ACNGT	2 cut(s)	383, 513
TaqI	TCGA	2 cut(s)	43, 243
TasI	AATT	4 cut(s)	162, 192, 299, 737
TatI	WGTACW	1 cut(s)	417
TfiI	GAWTC	3 cut(s)	40, 220, 611
Tru1I	TTAA	2 cut(s)	297, 440
Tru9I	TTAA	2 cut(s)	297, 440
TscAI	CASTG	2 cut(s)	388, 711
TseI	GCWGC	3 cut(s)	50, 168, 592
TspDTI	ATGAA	1 cut(s)	699
TspGWI	ACGGA	1 cut(s)	99
TspRI	CASTG	2 cut(s)	388, 711
Tth111I	GACNNNGTC	1 cut(s)	669
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	2 cut(s)	192, 299
XmiI	GTMKAC	1 cut(s)	498
XspI	CTAG	1 cut(s)	755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.