Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034215.1

Orthogroup ID

OG0006789

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3433

Gene Structure 3433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034215.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1905 bp

gttaagattgcaataattggtattacagcgggaggtgttggtcttgatttctcatcagcaacacatgttgtcttcttggagcttcctcagtcaccatcattgatgcttcaggctgaggatagagctcacaggcgagggcaaacaaatgcagtcaacatatacttcttttctgggaaggataccattgatgagtcacattggcaatacttgaacaggagtttgcgccgtgtttcatctacaacaaatggaaaatatgatgcaatacaagaaatagcggttgaagatgtttctttttttgagacattgggtggaggtgatacatgtgaagattatactttgcaaaagtcagagggtagtgagttctcagcagagctaatcaaagttcctggttctggctgcttagctaaggctatgaagccttttgagtcaaatgataaattagtgccaaacattccacagagatctgaaagacatcatggtactgatggcatttcatcacaaactgaaaattctgttattaaggatgatgtggtctctgatttggatatggataacagtatctctttagatgagaagttggaaacaaatgttcctgaggctaaaattagagaagggacagtagtctattcttgtgagttaaataagagcagtgaagatagagatggactggaatcactggataaggaagacggaatcaaatctcagacaaacaaaggacatgatggccaatctgttcagctgatcaaaggacatgatcgcgaacctgttcagccaatcaaaggacatgatcgcgaacctgttcagccaatcaaaggacatgatcgcgaacctgttcagccaatcaaaggacatgatcgcgaacctgttcagccaatcaaaggacatgatcgcgaacctgttcagccaatcaaaggacatgatcgcgaacctgttcagccaatcaaaggacatgatcgcgaacctgttcagccaatcaaaggacatgatcgcgaacctgttcagccaatcaaaggacatgatcgcgaacctgttcagccaatcaaaggacatgatcgcgaacctgttcagccaatcaaaggacatgatcgcgaacctgttcagccaatcaaaggacatgatcgcgaacctgttcagccaatcaaaggacatgatcgcgaacctgttcagccaatcaaaggacatgatcgcgaacctgttcagccaatcaaaggacatgatcgcgaacctgttcagccaattgaagctgaagaaggtggcactaaccaagtagatgctcttcgatttgaggtgagtcaatataccggtagaatccacttgtattcttgcatctcaggagaggattcaagaccaaggccactttttgagaattttagaccagaggaacttgagtcactaagttcttctgccgctgaaagtattaaaggaacagcttcaaattcattcaaggataacccagcttatttgcatgcacttcttgaattctataaagaatggaagaaactgaggcccattgaacaaaagaaattaattggaaagcctttgcaacttcctttgactgttgagttgtgctttctgtgtgaaggcactaaccacgacaatacgggactgctgaagggccgaagcaagcgccgctctacaccttttgatgagattagcaaacccctaccatcaaatgctgtgtggaaaaaggtccacctacgtagtggctatggaaaaaaggagaagcaatacactcagggttacactttgactgatgaacctctctgtaaactctgccaaacaccatgcgagagccccaatgccaaggaacctgaatattttgaagacctgttctgtaatcttgactgttatggagagtaccgtatccgaactagtaacagatctattcgtcacgtaaggacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000228 GO:0000733 GO:0003674 GO:0003676 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0017111 GO:0019219 GO:0019222 GO:0031297 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031593 GO:0031974 GO:0031981 GO:0032392 GO:0033554 GO:0034641 GO:0034645 GO:0036292 GO:0036310 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045005 GO:0045910 GO:0045934 GO:0046483 GO:0048478 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070530 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090329 GO:0097159 GO:0097617 GO:0140030 GO:0140097 GO:1901360 GO:1901363 GO:1901576 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HNH Helicase_C SNF2_N

Protein Analysis

634

Amino Acids

71.38

Weight (kDa)

5.99

Isoelectric Point (pI)

44.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07810
fragaria_vesca	FvH4_5g14341 FvH4_5g14341 FvH4_5g14341 FvH4_5g14341
malus_domestica	MD14G1208200.v1.1
prunus_persica	Prupe.5G200300_v2.0.a1
pyrus_communis	pycom14g17190 pycom14g17200
rosa_chinensis	RchiOBHm_Chr7g0182391
rosa_laevigata	RLG00000005127
rosa_multiflora	Rmu_co8327751.1_g000001 Rmu_sc0000003.1_g000001 Rmu_sc0034215.1_g000001 Rmu_sc0034216.1_g000001 Rmu_sc0037577.1_g000004 Rmu_sc0037929.1_g000001 Rmu_ssc0000034.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271270
rosa_rugosa	Rorug06G0447100
rosa_samantha	Rh7AG050500 Rh7BG050300 Rh7CG051800 Rh7CG051900 Rh7DG049600
rosa_wichuraiana	Rw7G004130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1632
AciI	CCGC	4 cut(s)	29, 275, 1407, 1630
AcoI	YGGCCR	1 cut(s)	724
AcsI	RAATTY	4 cut(s)	508, 1366, 1435, 1478
AcuI	CTGAAG	3 cut(s)	92, 1266, 1631
AfaI	GTAC	2 cut(s)	481, 1859
AflIII	ACRYGT	2 cut(s)	64, 320
AgeI	ACCGGT	1 cut(s)	1301
AgsI	TTSAA	9 cut(s)	211, 281, 1241, 1344, 1434, 1444, 1478, 1514, 1823
AhlI	ACTAGT	1 cut(s)	1871
AjnI	CCWGG	1 cut(s)	385
AluBI	AGCT	8 cut(s)	82, 125, 373, 404, 739, 1244, 1430, 1457
AluI	AGCT	8 cut(s)	82, 125, 373, 404, 739, 1244, 1430, 1457
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	2 cut(s)	293, 538
AoxI	GGCC	4 cut(s)	724, 1352, 1505, 1615
ApeKI	GCWGC	1 cut(s)	396
ApoI	RAATTY	4 cut(s)	508, 1366, 1435, 1478
AseI	ATTAAT	1 cut(s)	1526
AsiGI	ACCGGT	1 cut(s)	1301
AspLEI	GCGC	2 cut(s)	225, 1629
AspS9I	GGNCC	3 cut(s)	1506, 1615, 1690
AsuHPI	GGTGA	3 cut(s)	84, 326, 1300
AvaII	GGWCC	1 cut(s)	1690
AxyI	CCTNAGG	1 cut(s)	594
BalI	TGGCCA	1 cut(s)	726
BanII	GRGCYC	2 cut(s)	127, 1796
BarI	GAAGNNNNNNTAC	2 cut(s)	1260, 1292
BbsI	GAAGAC	3 cut(s)	64, 693, 1830
Bbv12I	GWGCWC	1 cut(s)	127
BbvCI	CCTCAGC	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	383
BccI	CCATC	5 cut(s)	103, 479, 656, 716, 1675
BceAI	ACGGC	1 cut(s)	210
BciT130I	CCWGG	1 cut(s)	387
BciVI	GTATCC	2 cut(s)	172, 1874
BclI	TGATCA	1 cut(s)	741
BcoDI	GTCTC	2 cut(s)	293, 538
BcuI	ACTAGT	1 cut(s)	1871
BfaI	CTAG	1 cut(s)	1872
BfoI	RGCGCY	1 cut(s)	1630
BfuI	GTATCC	2 cut(s)	172, 1874
BglII	AGATCT	2 cut(s)	461, 1880
BisI	GCNGC	3 cut(s)	397, 1407, 1630
BlpI	GCTNAGC	1 cut(s)	400
BlsI	GCNGC	3 cut(s)	398, 1408, 1631
Bme1390I	CCNGG	1 cut(s)	387
Bme18I	GGWCC	1 cut(s)	1690
BmgT120I	GGNCC	3 cut(s)	1506, 1615, 1690
BmiI	GGNNCC	1 cut(s)	1809
BmrFI	CCNGG	1 cut(s)	387
BmsI	GCATC	4 cut(s)	93, 247, 1261, 1335
BoxI	GACNNNNGTC	1 cut(s)	620
BpiI	GAAGAC	3 cut(s)	64, 693, 1830
Bpu10I	CCTNAGC	2 cut(s)	114, 405
Bpu1102I	GCTNAGC	1 cut(s)	400
BpuEI	CTTGAG	1 cut(s)	1406
BsaAI	YACGTR	2 cut(s)	1700, 1894
BsaI	GGTCTC	1 cut(s)	538
BsaJI	CCNNGG	2 cut(s)	1349, 1803
BsaWI	WCCGGW	1 cut(s)	1301
Bse118I	RCCGGY	1 cut(s)	1301
Bse1I	ACTGG	2 cut(s)	672, 681
Bse21I	CCTNAGG	1 cut(s)	594
BseBI	CCWGG	1 cut(s)	387
BseDI	CCNNGG	2 cut(s)	1349, 1803
BseGI	GGATG	1 cut(s)	529
BseMII	CTCAG	8 cut(s)	101, 105, 378, 585, 716, 1344, 1493, 1748
BseNI	ACTGG	2 cut(s)	672, 681
BseXI	GCAGC	1 cut(s)	383
BseYI	CCCAGC	1 cut(s)	1453
BshFI	GGCC	4 cut(s)	726, 1354, 1507, 1617
BshTI	ACCGGT	1 cut(s)	1301
BsiHKAI	GWGCWC	1 cut(s)	127
BsiSI	CCGG	1 cut(s)	1302
BslFI	GGGAC	2 cut(s)	628, 1617
BsmAI	GTCTC	2 cut(s)	293, 538
BsmFI	GGGAC	2 cut(s)	628, 1617
BsnI	GGCC	4 cut(s)	726, 1354, 1507, 1617
Bso31I	GGTCTC	1 cut(s)	538
Bsp1286I	GDGCHC	2 cut(s)	127, 1796
Bsp1720I	GCTNAGC	1 cut(s)	400
BspACI	CCGC	4 cut(s)	29, 275, 1407, 1630
BspANI	GGCC	4 cut(s)	726, 1354, 1507, 1617
BspCNI	CTCAG	8 cut(s)	100, 106, 377, 586, 715, 1343, 1494, 1747
BspLI	GGNNCC	1 cut(s)	1809
BspQI	GCTCTTC	1 cut(s)	1281
BspTNI	GGTCTC	1 cut(s)	538
BsrBI	CCGCTC	1 cut(s)	1632
BsrFI	RCCGGY	1 cut(s)	1301
BsrI	ACTGG	2 cut(s)	672, 681
BssAI	RCCGGY	1 cut(s)	1301
BssECI	CCNNGG	2 cut(s)	1349, 1803
BssT1I	CCWWGG	2 cut(s)	1349, 1803
Bst2UI	CCWGG	1 cut(s)	387
Bst4CI	ACNGT	5 cut(s)	557, 619, 1558, 1847, 1862
Bst6I	CTCTTC	1 cut(s)	1281
BstBAI	YACGTR	2 cut(s)	1700, 1894
BstC8I	GCNNGC	2 cut(s)	1467, 1625
BstF5I	GGATG	1 cut(s)	529
BstH2I	RGCGCY	1 cut(s)	1630
BstHHI	GCGC	2 cut(s)	225, 1629
BstMAI	GTCTC	2 cut(s)	293, 538
BstMWI	GCNNNNNNNGC	1 cut(s)	1629
BstNI	CCWGG	1 cut(s)	387
BstNSI	RCATGY	3 cut(s)	68, 324, 1469
BstPAI	GACNNNNGTC	1 cut(s)	620
BstSCI	CCNGG	1 cut(s)	385
BstSNI	TACGTA	1 cut(s)	1700
BstV1I	GCAGC	1 cut(s)	383
BstV2I	GAAGAC	3 cut(s)	64, 693, 1830
BstX2I	RGATCY	2 cut(s)	461, 1880
BstYI	RGATCY	2 cut(s)	461, 1880
Bsu36I	CCTNAGG	1 cut(s)	594
BsuI	GTATCC	2 cut(s)	172, 1874
BsuRI	GGCC	4 cut(s)	726, 1354, 1507, 1617
BtsCI	GGATG	1 cut(s)	529
BtsI	GCAGTG	1 cut(s)	655
BtsIMutI	CAGTG	2 cut(s)	655, 674
Cac8I	GCNNGC	2 cut(s)	1467, 1625
CfoI	GCGC	2 cut(s)	225, 1629
Cfr10I	RCCGGY	1 cut(s)	1301
Cfr13I	GGNCC	3 cut(s)	1506, 1615, 1690
Csp6I	GTAC	2 cut(s)	480, 1858
CspAI	ACCGGT	1 cut(s)	1301
CviQI	GTAC	2 cut(s)	480, 1858
EaeI	YGGCCR	1 cut(s)	724
Eam1104I	CTCTTC	1 cut(s)	1281
EarI	CTCTTC	1 cut(s)	1281
Ecl136II	GAGCTC	1 cut(s)	125
Eco105I	TACGTA	1 cut(s)	1700
Eco130I	CCWWGG	2 cut(s)	1349, 1803
Eco24I	GRGCYC	2 cut(s)	127, 1796
Eco31I	GGTCTC	1 cut(s)	538
Eco47I	GGWCC	1 cut(s)	1690
Eco53kI	GAGCTC	1 cut(s)	125
Eco57I	CTGAAG	3 cut(s)	92, 1266, 1631
Eco81I	CCTNAGG	1 cut(s)	594
EcoICRI	GAGCTC	1 cut(s)	125
EcoRI	GAATTC	1 cut(s)	1478
EcoRII	CCWGG	1 cut(s)	385
EcoT14I	CCWWGG	2 cut(s)	1349, 1803
EcoT38I	GRGCYC	2 cut(s)	127, 1796
ErhI	CCWWGG	2 cut(s)	1349, 1803
FaqI	GGGAC	2 cut(s)	628, 1617
FauI	CCCGC	1 cut(s)	22
FbaI	TGATCA	1 cut(s)	741
Fnu4HI	GCNGC	3 cut(s)	397, 1407, 1630
FokI	GGATG	1 cut(s)	536
FriOI	GRGCYC	2 cut(s)	127, 1796
Fsp4HI	GCNGC	3 cut(s)	397, 1407, 1630
FspBI	CTAG	1 cut(s)	1872
GlaI	GCGC	2 cut(s)	224, 1628
GluI	GCNGC	3 cut(s)	397, 1407, 1630
GsaI	CCCAGC	1 cut(s)	1457
HaeII	RGCGCY	1 cut(s)	1630
HaeIII	GGCC	4 cut(s)	726, 1354, 1507, 1617
HapII	CCGG	1 cut(s)	1302
HhaI	GCGC	2 cut(s)	225, 1629
Hin6I	GCGC	2 cut(s)	223, 1627
HinP1I	GCGC	2 cut(s)	223, 1627
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	8 cut(s)	191, 425, 671, 693, 1291, 1308, 1340, 1388
HpaII	CCGG	1 cut(s)	1302
HphI	GGTGA	3 cut(s)	84, 326, 1300
Hpy166II	GTNNAC	3 cut(s)	154, 1693, 1769
Hpy188I	TCNGA	5 cut(s)	349, 466, 538, 705, 1868
Hpy8I	GTNNAC	3 cut(s)	154, 1693, 1769
HpyAV	CCTTC	5 cut(s)	169, 605, 1244, 1574, 1606
HpyCH4III	ACNGT	5 cut(s)	557, 619, 1558, 1847, 1862
HpyCH4IV	ACGT	2 cut(s)	1699, 1893
HpyCH4V	TGCA	8 cut(s)	11, 149, 260, 340, 1326, 1465, 1469, 1543
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1629
HpySE526I	ACGT	2 cut(s)	1699, 1893
HspAI	GCGC	2 cut(s)	223, 1627
Ksp22I	TGATCA	1 cut(s)	741
LguI	GCTCTTC	1 cut(s)	1281
LmnI	GCTCC	1 cut(s)	79
Lsp1109I	GCAGC	1 cut(s)	383
LweI	GCATC	4 cut(s)	93, 247, 1261, 1335
MaeI	CTAG	1 cut(s)	1872
MaeII	ACGT	2 cut(s)	1699, 1893
MaeIII	GTNAC	6 cut(s)	90, 192, 1389, 1739, 1874, 1889
MbiI	CCGCTC	1 cut(s)	1632
MfeI	CAATTG	1 cut(s)	1236
MflI	RGATCY	2 cut(s)	461, 1880
MhlI	GDGCHC	2 cut(s)	127, 1796
MlsI	TGGCCA	1 cut(s)	726
MluNI	TGGCCA	1 cut(s)	726
MlyI	GAGTC	4 cut(s)	200, 434, 1300, 1397
MmeI	TCCRAC	1 cut(s)	558
Mox20I	TGGCCA	1 cut(s)	726
MscI	TGGCCA	1 cut(s)	726
MseI	TTAA	5 cut(s)	3, 519, 638, 1419, 1526
Msp20I	TGGCCA	1 cut(s)	726
MspA1I	CMGCKG	3 cut(s)	29, 739, 1409
MspI	CCGG	1 cut(s)	1302
MspR9I	CCNGG	1 cut(s)	387
MunI	CAATTG	1 cut(s)	1236
MvaI	CCWGG	1 cut(s)	387
MwoI	GCNNNNNNNGC	1 cut(s)	1629
NlaIV	GGNNCC	1 cut(s)	1809
NmuCI	GTSAC	4 cut(s)	90, 192, 1389, 1889
NspI	RCATGY	3 cut(s)	68, 324, 1469
PaeI	GCATGC	1 cut(s)	1469
PciI	ACATGT	2 cut(s)	64, 320
PciSI	GCTCTTC	1 cut(s)	1281
PfeI	GAWTC	4 cut(s)	671, 693, 1308, 1340
PinAI	ACCGGT	1 cut(s)	1301
PkrI	GCNGC	3 cut(s)	398, 1408, 1631
PleI	GAGTC	4 cut(s)	199, 433, 1299, 1396
PpsI	GAGTC	4 cut(s)	199, 433, 1299, 1396
Ppu21I	YACGTR	2 cut(s)	1700, 1894
PscI	ACATGT	2 cut(s)	64, 320
PshAI	GACNNNNGTC	1 cut(s)	620
PshBI	ATTAAT	1 cut(s)	1526
Psp124BI	GAGCTC	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	385
PspFI	CCCAGC	1 cut(s)	1453
PspGI	CCWGG	1 cut(s)	385
PspN4I	GGNNCC	1 cut(s)	1809
PspPI	GGNCC	3 cut(s)	1506, 1615, 1690
PsuI	RGATCY	2 cut(s)	461, 1880
PvuII	CAGCTG	1 cut(s)	739
RsaI	GTAC	2 cut(s)	481, 1859
RsaNI	GTAC	2 cut(s)	480, 1858
SacI	GAGCTC	1 cut(s)	127
SapI	GCTCTTC	1 cut(s)	1281
SaqAI	TTAA	5 cut(s)	3, 519, 638, 1419, 1526
SatI	GCNGC	3 cut(s)	397, 1407, 1630
Sau96I	GGNCC	3 cut(s)	1506, 1615, 1690
SchI	GAGTC	4 cut(s)	200, 434, 1300, 1397
ScrFI	CCNGG	1 cut(s)	387
SduI	GDGCHC	2 cut(s)	127, 1796
SfaNI	GCATC	4 cut(s)	93, 247, 1261, 1335
SinI	GGWCC	1 cut(s)	1690
SmlI	CTYRAG	1 cut(s)	1385
SmoI	CTYRAG	1 cut(s)	1385
SnaBI	TACGTA	1 cut(s)	1700
SpeI	ACTAGT	1 cut(s)	1871
SphI	GCATGC	1 cut(s)	1469
SsiI	CCGC	4 cut(s)	29, 275, 1407, 1630
SspI	AATATT	1 cut(s)	1817
SspMI	CTAG	1 cut(s)	1872
SstI	GAGCTC	1 cut(s)	127
StyD4I	CCNGG	1 cut(s)	385
StyI	CCWWGG	2 cut(s)	1349, 1803
TaaI	ACNGT	5 cut(s)	557, 619, 1558, 1847, 1862
TaiI	ACGT	2 cut(s)	1702, 1896
TaqI	TCGA	1 cut(s)	1279
TauI	GCSGC	2 cut(s)	1409, 1632
TfiI	GAWTC	4 cut(s)	671, 693, 1308, 1340
Tru1I	TTAA	5 cut(s)	3, 519, 638, 1419, 1526
Tru9I	TTAA	5 cut(s)	3, 519, 638, 1419, 1526
TscAI	CASTG	2 cut(s)	655, 681
TseFI	GTSAC	4 cut(s)	90, 192, 1389, 1889
TseI	GCWGC	1 cut(s)	396
Tsp45I	GTSAC	4 cut(s)	90, 192, 1389, 1889
TspDTI	ATGAA	5 cut(s)	222, 428, 483, 1428, 1770
TspGWI	ACGGA	1 cut(s)	705
TspRI	CASTG	2 cut(s)	655, 681
VpaK11BI	GGWCC	1 cut(s)	1690
VspI	ATTAAT	1 cut(s)	1526
XapI	RAATTY	4 cut(s)	508, 1366, 1435, 1478
XceI	RCATGY	3 cut(s)	68, 324, 1469
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1700
XspI	CTAG	1 cut(s)	1872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.