Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0009848

Physical Location & Seq

Genomic Coordinates Forward (+)

63669790 .. 63672341

Gene Structure 2552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00271290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGCAGCAGCAGCATCAGAACAACCCCAACATCACTCATCTAGTCCCCATGTCCAACTATGACGTTGCTGAGCTAAAGTTGGAAAATGGTCATTTGGCAATTCATGGGCTTGGTGGGATTGTTCCCACTGCTCTGGAAAAGCCCACCTGGAGCAATAGGGCATGTGACACACTGGAATCAATAGTCCATCAAGCTACAAGCCACAAAGTACCTAAAACAAATTTAAGCTCAATGGTTGCATCCTCTGGTCGAACATGGACTGAAGATTCCGGCCAGCAGCCGTTGGCAAACAGTTGGATCAGGAACTGTACCCGATCGGATTCCGACTATCATGGAAAGAATGTTAGTAGTACTAGTACTACTAGCAATGTTCATGAAGAACAGACCGAGTACCAGAGGGACAATGATACAGCTCTAAACACATGGATTTCTTTTGAATCGGCTAGGAGCAAAAGCAATGACGGCGATTCCACTTGTCAGGAGGGATTGGAAAACCAAGACAAAGGACGAAAGACCGCAAAGGGCAATGAAGCAAGCCGTTCACGATCACGATCACGGCGAGTTGCTGCCATCCATAATCAGTCAGAGAGGAAACGAAGAGATAGGATCAATCAGAAAATGAAAGCTCTACAGAGGTTGGTGCCAAATGCCGATAAGACTGACAAAGCTTCAATGCTCGACGAGGTGATAAAATACTTGGAACAACTTCAAGCACAAGTTCAATTGATGAATAGCATGAGGAATAATATGCATCCCCATATGAATATGATGATGCCTTTAGGAATGCAGCAGCAGCAACATCTTCATCAAATGTCAGTCCTAGCGCGCATGGGAATGACTCCTGTTGTTCCTGGCGTGCTAGGAATGGGAATGCTCGACGTAAGCAACATGGCAAGAATTGCTCCTCATCAATCTCTACAGCAGCCGCTCATTCATCCTACTCCTGCATCATTTCTTCCACCCTTTATGGTGCCCCAACTGATGCCGCCAAAGCCTGACCCTGCCACTAGTGCTAATTCAGACTCTTTTGCTGATCCATATCGTGCCCTCCTAGCACAACAGCAATCAATGAATATGGACCTGTTCAACAGGATGGCAGCACTGTACGGTCAACAAGTCAATCATCAGACGGCAACAAGCAGCCCATCACAGTCAAACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003700 GO:0005575 GO:0005911 GO:0006355 GO:0008150 GO:0009506 GO:0009566 GO:0009567 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0030054 GO:0031323 GO:0031326 GO:0044703 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

387

Amino Acids

43.21

Weight (kDa)

8.91

Isoelectric Point (pI)

57.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	192 - 237	1.8e-12	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	195 - 243	1e-07	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61270 AT5G61270 AT5G61270
fragaria_vesca	FvH4_5g14360
malus_domestica	MD06G1199400.v1.1 MD14G1208000.v1.1
prunus_persica	Prupe.5G200100_v2.0.a1
pyrus_communis	pycom06g17620 pycom14g17170
rosa_chinensis	RchiOBHm_Chr7g0182341
rosa_laevigata	RLG00000005129
rosa_multiflora	Rmu_sc0002070.1_g000014
rosa_roxburghii	Rroxscaffold_3G00271290
rosa_rugosa	Rorug06G0447100
rosa_samantha	Rh7AG050200 Rh7AG050400 Rh7BG050200 Rh7CG051500 Rh7CG051700 Rh7DG049400
rosa_wichuraiana	Rw7G004110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	640, 970
AccBSI	CCGCTC	1 cut(s)	928
AccII	CGCG	1 cut(s)	826
AciI	CCGC	3 cut(s)	516, 926, 986
AclWI	GGATC	3 cut(s)	305, 614, 1028
AcoI	YGGCCR	1 cut(s)	271
AcsI	RAATTY	1 cut(s)	220
AcuI	CTGAAG	1 cut(s)	282
AfaI	GTAC	6 cut(s)	210, 310, 352, 358, 392, 1106
AgsI	TTSAA	5 cut(s)	437, 672, 710, 722, 1087
AhlI	ACTAGT	2 cut(s)	353, 1007
AjnI	CCWGG	2 cut(s)	146, 850
AluBI	AGCT	6 cut(s)	73, 194, 228, 413, 626, 668
AluI	AGCT	6 cut(s)	73, 194, 228, 413, 626, 668
AlwI	GGATC	3 cut(s)	305, 614, 1028
AlwNI	CAGNNNCTG	1 cut(s)	306
AoxI	GGCC	1 cut(s)	271
ApoI	RAATTY	1 cut(s)	220
Asp700I	GAANNNNTTC	1 cut(s)	705
AspLEI	GCGC	2 cut(s)	826, 828
AspS9I	GGNCC	1 cut(s)	1078
AsuHPI	GGTGA	1 cut(s)	697
AvaII	GGWCC	1 cut(s)	1078
BaeGI	GKGCMC	2 cut(s)	975, 1048
BanI	GGYRCC	2 cut(s)	640, 970
BccI	CCATC	4 cut(s)	195, 578, 1087, 1153
BceAI	ACGGC	5 cut(s)	265, 478, 522, 572, 1146
BciT130I	CCWGG	2 cut(s)	148, 852
BcuI	ACTAGT	2 cut(s)	353, 1007
BfaI	CTAG	8 cut(s)	41, 354, 363, 444, 821, 860, 1008, 1052
BfmI	CTRYAG	2 cut(s)	629, 917
BlpI	GCTNAGC	1 cut(s)	69
BmcAI	AGTACT	2 cut(s)	352, 358
Bme1390I	CCNGG	2 cut(s)	148, 852
Bme18I	GGWCC	1 cut(s)	1078
BmgT120I	GGNCC	1 cut(s)	1078
BmiI	GGNNCC	2 cut(s)	642, 972
BmrFI	CCNGG	2 cut(s)	148, 852
BmsI	GCATC	6 cut(s)	22, 248, 760, 762, 956, 972
BpmI	CTGGAG	1 cut(s)	169
Bpu1102I	GCTNAGC	1 cut(s)	69
BsaBI	GATNNNNATC	2 cut(s)	550, 1038
Bse1I	ACTGG	1 cut(s)	177
Bse3DI	GCAATG	3 cut(s)	373, 463, 532
Bse8I	GATNNNNATC	2 cut(s)	550, 1038
BseBI	CCWGG	2 cut(s)	148, 852
BseGI	GGATG	5 cut(s)	239, 570, 751, 934, 1098
BseJI	GATNNNNATC	2 cut(s)	550, 1038
BseMI	GCAATG	3 cut(s)	373, 463, 532
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	177
BsePI	GCGCGC	1 cut(s)	824
BseRI	GAGGAG	1 cut(s)	894
BseSI	GKGCMC	2 cut(s)	975, 1048
Bsh1236I	CGCG	1 cut(s)	826
Bsh1285I	CGRYCG	1 cut(s)	317
BshFI	GGCC	1 cut(s)	273
BshNI	GGYRCC	2 cut(s)	640, 970
BsiEI	CGRYCG	1 cut(s)	317
BsiSI	CCGG	1 cut(s)	270
BslFI	GGGAC	2 cut(s)	29, 413
BsmFI	GGGAC	2 cut(s)	29, 413
BsmI	GAATGC	2 cut(s)	789, 876
BsnI	GGCC	1 cut(s)	273
Bsp1286I	GDGCHC	2 cut(s)	975, 1048
Bsp143I	GATC	6 cut(s)	297, 314, 545, 551, 606, 1033
Bsp1720I	GCTNAGC	1 cut(s)	69
BspACI	CCGC	3 cut(s)	516, 926, 986
BspANI	GGCC	1 cut(s)	273
BspCNI	CTCAG	1 cut(s)	61
BspFNI	CGCG	1 cut(s)	826
BspHI	TCATGA	1 cut(s)	373
BspLI	GGNNCC	2 cut(s)	642, 972
BspPI	GGATC	3 cut(s)	305, 614, 1028
BspT107I	GGYRCC	2 cut(s)	640, 970
BsrBI	CCGCTC	1 cut(s)	928
BsrDI	GCAATG	3 cut(s)	373, 463, 532
BsrI	ACTGG	1 cut(s)	177
BssHII	GCGCGC	1 cut(s)	824
BssMI	GATC	6 cut(s)	297, 314, 545, 551, 606, 1033
Bst2UI	CCWGG	2 cut(s)	148, 852
Bst4CI	ACNGT	5 cut(s)	293, 308, 1104, 1109, 1152
Bst6I	CTCTTC	1 cut(s)	592
BstAPI	GCANNNNNTGC	1 cut(s)	899
BstC8I	GCNNGC	4 cut(s)	275, 535, 826, 857
BstDEI	CTNAG	1 cut(s)	69
BstF5I	GGATG	5 cut(s)	239, 570, 751, 934, 1098
BstFNI	CGCG	1 cut(s)	826
BstHHI	GCGC	2 cut(s)	826, 828
BstKTI	GATC	6 cut(s)	300, 317, 548, 554, 609, 1036
BstMBI	GATC	6 cut(s)	297, 314, 545, 551, 606, 1033
BstMCI	CGRYCG	1 cut(s)	317
BstMWI	GCNNNNNNNGC	7 cut(s)	10, 462, 793, 899, 991, 1010, 1052
BstNI	CCWGG	2 cut(s)	148, 852
BstNSI	RCATGY	1 cut(s)	165
BstSCI	CCNGG	2 cut(s)	146, 850
BstSFI	CTRYAG	2 cut(s)	629, 917
BstSLI	GKGCMC	2 cut(s)	975, 1048
BstUI	CGCG	1 cut(s)	826
BstXI	CCANNNNNNTGG	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	273
BtsCI	GGATG	5 cut(s)	239, 570, 751, 934, 1098
BtsI	GCAGTG	1 cut(s)	126
BtsIMutI	CAGTG	3 cut(s)	126, 170, 1100
Cac8I	GCNNGC	4 cut(s)	275, 535, 826, 857
CaiI	CAGNNNCTG	1 cut(s)	306
CciI	TCATGA	1 cut(s)	373
CfoI	GCGC	2 cut(s)	826, 828
Cfr13I	GGNCC	1 cut(s)	1078
Csp6I	GTAC	6 cut(s)	209, 309, 351, 357, 391, 1105
CviQI	GTAC	6 cut(s)	209, 309, 351, 357, 391, 1105
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	6 cut(s)	299, 316, 547, 553, 608, 1035
DpnII	GATC	6 cut(s)	297, 314, 545, 551, 606, 1033
EaeI	YGGCCR	1 cut(s)	271
Eam1104I	CTCTTC	1 cut(s)	592
EarI	CTCTTC	1 cut(s)	592
Eco47I	GGWCC	1 cut(s)	1078
Eco57I	CTGAAG	1 cut(s)	282
EcoRII	CCWGG	2 cut(s)	146, 850
EcoT22I	ATGCAT	1 cut(s)	753
FaqI	GGGAC	2 cut(s)	29, 413
FauNDI	CATATG	1 cut(s)	759
FokI	GGATG	5 cut(s)	226, 557, 738, 921, 1105
FspBI	CTAG	8 cut(s)	41, 354, 363, 444, 821, 860, 1008, 1052
GlaI	GCGC	2 cut(s)	825, 827
GsuI	CTGGAG	1 cut(s)	169
HaeIII	GGCC	1 cut(s)	273
HapII	CCGG	1 cut(s)	270
HhaI	GCGC	2 cut(s)	826, 828
Hin6I	GCGC	2 cut(s)	824, 826
HinP1I	GCGC	2 cut(s)	824, 826
HincII	GTYRAC	1 cut(s)	1112
HindII	GTYRAC	1 cut(s)	1112
HindIII	AAGCTT	1 cut(s)	666
HinfI	GANTC	7 cut(s)	176, 266, 320, 437, 467, 838, 1022
HpaII	CCGG	1 cut(s)	270
HphI	GGTGA	1 cut(s)	697
Hpy166II	GTNNAC	2 cut(s)	542, 1112
Hpy188I	TCNGA	7 cut(s)	18, 319, 325, 586, 615, 1021, 1128
Hpy188III	TCNNGA	6 cut(s)	134, 301, 374, 479, 543, 549
Hpy8I	GTNNAC	2 cut(s)	542, 1112
Hpy99I	CGWCG	2 cut(s)	683, 881
HpyCH4III	ACNGT	5 cut(s)	293, 308, 1104, 1109, 1152
HpyCH4IV	ACGT	2 cut(s)	63, 879
HpyCH4V	TGCA	5 cut(s)	4, 239, 751, 787, 947
HpyF10VI	GCNNNNNNNGC	7 cut(s)	10, 462, 793, 899, 991, 1010, 1052
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	2 cut(s)	63, 879
HspAI	GCGC	2 cut(s)	824, 826
Kzo9I	GATC	6 cut(s)	297, 314, 545, 551, 606, 1033
LmnI	GCTCC	3 cut(s)	150, 447, 907
LweI	GCATC	6 cut(s)	22, 248, 760, 762, 956, 972
MaeI	CTAG	8 cut(s)	41, 354, 363, 444, 821, 860, 1008, 1052
MaeII	ACGT	2 cut(s)	63, 879
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	6 cut(s)	299, 316, 547, 553, 608, 1035
MbiI	CCGCTC	1 cut(s)	928
MboI	GATC	6 cut(s)	297, 314, 545, 551, 606, 1033
MboII	GAAGA	5 cut(s)	275, 389, 609, 794, 947
MfeI	CAATTG	1 cut(s)	722
MhlI	GDGCHC	2 cut(s)	975, 1048
MluCI	AATT	6 cut(s)	99, 220, 722, 897, 1015, 1159
MlyI	GAGTC	2 cut(s)	832, 1016
MmeI	TCCRAC	4 cut(s)	60, 78, 275, 348
MnlI	CCTC	9 cut(s)	253, 390, 475, 582, 627, 676, 732, 915, 1058
Mph1103I	ATGCAT	1 cut(s)	753
MroXI	GAANNNNTTC	1 cut(s)	705
MseI	TTAA	2 cut(s)	224, 1162
MslI	CAYNNNNRTG	1 cut(s)	833
MspI	CCGG	1 cut(s)	270
MspR9I	CCNGG	2 cut(s)	148, 852
MunI	CAATTG	1 cut(s)	722
Mva1269I	GAATGC	2 cut(s)	789, 876
MvaI	CCWGG	2 cut(s)	148, 852
MvnI	CGCG	1 cut(s)	826
MwoI	GCNNNNNNNGC	7 cut(s)	10, 462, 793, 899, 991, 1010, 1052
NdeI	CATATG	1 cut(s)	759
NdeII	GATC	6 cut(s)	297, 314, 545, 551, 606, 1033
NlaIV	GGNNCC	2 cut(s)	642, 972
NmuCI	GTSAC	1 cut(s)	164
NsiI	ATGCAT	1 cut(s)	753
NspI	RCATGY	1 cut(s)	165
PagI	TCATGA	1 cut(s)	373
PauI	GCGCGC	1 cut(s)	824
PcsI	WCGNNNNNNNCGW	1 cut(s)	556
PctI	GAATGC	2 cut(s)	789, 876
PdmI	GAANNNNTTC	1 cut(s)	705
PfeI	GAWTC	5 cut(s)	176, 266, 320, 437, 467
Ple19I	CGATCG	1 cut(s)	317
PleI	GAGTC	2 cut(s)	832, 1016
PpsI	GAGTC	2 cut(s)	832, 1016
Psp6I	CCWGG	2 cut(s)	146, 850
PspGI	CCWGG	2 cut(s)	146, 850
PspN4I	GGNNCC	2 cut(s)	642, 972
PspPI	GGNCC	1 cut(s)	1078
PstNI	CAGNNNCTG	1 cut(s)	306
PteI	GCGCGC	1 cut(s)	824
PvuI	CGATCG	1 cut(s)	317
RsaI	GTAC	6 cut(s)	210, 310, 352, 358, 392, 1106
RsaNI	GTAC	6 cut(s)	209, 309, 351, 357, 391, 1105
RseI	CAYNNNNRTG	1 cut(s)	833
SaqAI	TTAA	2 cut(s)	224, 1162
Sau3AI	GATC	6 cut(s)	297, 314, 545, 551, 606, 1033
Sau96I	GGNCC	1 cut(s)	1078
ScaI	AGTACT	2 cut(s)	352, 358
SchI	GAGTC	2 cut(s)	832, 1016
ScrFI	CCNGG	2 cut(s)	148, 852
SduI	GDGCHC	2 cut(s)	975, 1048
SfaNI	GCATC	6 cut(s)	22, 248, 760, 762, 956, 972
SfcI	CTRYAG	2 cut(s)	629, 917
SinI	GGWCC	1 cut(s)	1078
SmiMI	CAYNNNNRTG	1 cut(s)	833
SpeI	ACTAGT	2 cut(s)	353, 1007
Sse9I	AATT	6 cut(s)	99, 220, 722, 897, 1015, 1159
SsiI	CCGC	3 cut(s)	516, 926, 986
SspMI	CTAG	8 cut(s)	41, 354, 363, 444, 821, 860, 1008, 1052
StyD4I	CCNGG	2 cut(s)	146, 850
TaaI	ACNGT	5 cut(s)	293, 308, 1104, 1109, 1152
TaiI	ACGT	2 cut(s)	66, 882
TaqI	TCGA	3 cut(s)	250, 678, 876
TaqII	GACCGA	1 cut(s)	401
TasI	AATT	6 cut(s)	99, 220, 722, 897, 1015, 1159
TatI	WGTACW	2 cut(s)	350, 356
TauI	GCSGC	2 cut(s)	928, 988
TfiI	GAWTC	5 cut(s)	176, 266, 320, 437, 467
Tru1I	TTAA	2 cut(s)	224, 1162
Tru9I	TTAA	2 cut(s)	224, 1162
TscAI	CASTG	3 cut(s)	133, 177, 1107
TseFI	GTSAC	1 cut(s)	164
Tsp45I	GTSAC	1 cut(s)	164
TspRI	CASTG	3 cut(s)	133, 177, 1107
VpaK11BI	GGWCC	1 cut(s)	1078
XapI	RAATTY	1 cut(s)	220
XceI	RCATGY	1 cut(s)	165
XmnI	GAANNNNTTC	1 cut(s)	705
XspI	CTAG	8 cut(s)	41, 354, 363, 444, 821, 860, 1008, 1052
ZrmI	AGTACT	2 cut(s)	352, 358
Zsp2I	ATGCAT	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.