Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0009848

Physical Location & Seq

Genomic Coordinates Reverse (-)

33308877 .. 33311896

Gene Structure 3020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1199400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGCAGCAAGGGAACCAACCCAACGCCAGTCGTCTCGTCCCTTTGTCTAATTATGATGTCACAGAGCTAAAATCGAAAAACGGCCGGTTGGGCATGCATGGGCTTGGTGGGCTTCTTCCCACAGCCCAAGCAAAGCCCATATGGAGCAGGAGCAGGGCTTGTGACACACTAGAATCAATTGTCGATCAAGCTACATGCCACAAACGTGACCCAAATATCATCCACCATGACCAGACACCGGCCAACATAAGCTCGATGATTGCATCCTCAGGCGAAACCTGGACCGACAGCTCTGTCCAGGTACCGCCGGCGCAAGGGTGGATAAGAAAACGCACTCGGTCAGATTCCGGCTTCTTTGAGAATAATTTTAGTAGTAAGACTAATAACATTCATGAAGAACATGCAGATCCCAGTAGAGTTAGATTGTGCAGGGACAATGATACAACTATGTCCACATTGGTTTCTTTTGAGTCTCCTCCCAGTTTGAAGACCAAAAGCATCGAAGAGGATTCGGCCTGTCACGGAGGACTGAAAAACCGAGATGATGGCCGGGAAACCACCAAAGGTGGAAAATCAAGCCGTTCACACTCAACAAGACCAAGGCGAGCTGCTGCTGTTCATAATCAGTCAGAGCGGAAACGAAGAGACCGGATTAACCAGAAGATGAAAGCTCTGCAAAGGTTGGTGCCAAATGCAAGTAAGACTGATAAAGCTTCAATGCTTGATGAGGTGATCAAATACTTGCAACAACTTCAAGCTCAAGTCCAAATGATGCATAGTATGAGAAATTTCATGCCTAATGGCCATATGAACATGAATATGATGATGCCTTTAGAAATTCAGCAGCAGCAGCAGCAACATCTTCATCAGATGTCACTCCTCGCTCATATGGGAATGGGAACGGGAACGGGAACGCGCATTCATCCTACACCGGTTGTGGCTGCCACTCCTCCTTTCATGCCGCCCTTTATGATGCCACCGCTGATGCCACCGCACCATCCTCCTCAAGCAAAGCCTGAACCAACCGGCACTAACAATGGTTCAGACCCTCTCTCTGATCCATATTGTTCCCTCCTAGCACAGCAATCAATGAATATGGACCTGTTCAACAGGATGGCAGCTCTCTATCGCCAACAAGTCACTCCGGCTACAGCAGCGTCAAGCAGCCCGTCACAGTCAAACCAGGTTCGAAGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003700 GO:0005575 GO:0005911 GO:0006355 GO:0008150 GO:0009506 GO:0009566 GO:0009567 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0030054 GO:0031323 GO:0031326 GO:0044703 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

400

Amino Acids

44.44

Weight (kDa)

9.73

Isoelectric Point (pI)

68.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	206 - 252	1.1e-13	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	210 - 257	1.2e-07	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61270 AT5G61270 AT5G61270
fragaria_vesca	FvH4_5g14360
malus_domestica	MD06G1199400.v1.1 MD14G1208000.v1.1
prunus_persica	Prupe.5G200100_v2.0.a1
pyrus_communis	pycom06g17620 pycom14g17170
rosa_chinensis	RchiOBHm_Chr7g0182341
rosa_laevigata	RLG00000005129
rosa_multiflora	Rmu_sc0002070.1_g000014
rosa_roxburghii	Rroxscaffold_3G00271290
rosa_rugosa	Rorug06G0447100
rosa_samantha	Rh7AG050200 Rh7AG050400 Rh7BG050200 Rh7CG051500 Rh7CG051700 Rh7DG049400
rosa_wichuraiana	Rw7G004110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	293
Acc65I	GGTACC	1 cut(s)	301
AccB1I	GGYRCC	2 cut(s)	301, 685
AccBSI	CCGCTC	1 cut(s)	634
AccII	CGCG	1 cut(s)	916
AciI	CCGC	5 cut(s)	305, 634, 962, 980, 992
AclWI	GGATC	2 cut(s)	401, 1052
AcoI	YGGCCR	4 cut(s)	82, 240, 547, 802
AcsI	RAATTY	2 cut(s)	787, 837
AfaI	GTAC	1 cut(s)	303
AfiI	CCNNNNNNNGG	2 cut(s)	238, 314
AgeI	ACCGGT	1 cut(s)	931
AgsI	TTSAA	4 cut(s)	487, 717, 755, 1108
AjnI	CCWGG	3 cut(s)	278, 297, 1182
AleI	CACNNNNGTG	1 cut(s)	204
AluBI	AGCT	9 cut(s)	67, 191, 252, 291, 608, 671, 713, 758, 1121
AluI	AGCT	9 cut(s)	67, 191, 252, 291, 608, 671, 713, 758, 1121
Alw26I	GTCTC	3 cut(s)	38, 477, 639
AlwI	GGATC	2 cut(s)	401, 1052
AoxI	GGCC	5 cut(s)	82, 240, 513, 547, 802
ApoI	RAATTY	2 cut(s)	787, 837
AsiGI	ACCGGT	1 cut(s)	931
Asp718I	GGTACC	1 cut(s)	301
AspLEI	GCGC	2 cut(s)	313, 918
AspS9I	GGNCC	2 cut(s)	282, 1099
AsuC2I	CCSGG	1 cut(s)	551
AsuHPI	GGTGA	1 cut(s)	742
AsuII	TTCGAA	1 cut(s)	1189
AvaII	GGWCC	2 cut(s)	282, 1099
AxyI	CCTNAGG	1 cut(s)	268
BalI	TGGCCA	1 cut(s)	804
BanI	GGYRCC	2 cut(s)	301, 685
BbsI	GAAGAC	1 cut(s)	494
BccI	CCATC	3 cut(s)	539, 1005, 1108
BceAI	ACGGC	2 cut(s)	97, 564
BciT130I	CCWGG	3 cut(s)	280, 299, 1184
BclI	TGATCA	1 cut(s)	732
BcnI	CCSGG	1 cut(s)	551
BcoDI	GTCTC	3 cut(s)	38, 477, 639
BfaI	CTAG	3 cut(s)	170, 1076, 1198
BfmI	CTRYAG	1 cut(s)	1149
BglI	GCCNNNNNGGC	1 cut(s)	90
Bme1390I	CCNGG	4 cut(s)	280, 299, 551, 1184
Bme18I	GGWCC	2 cut(s)	282, 1099
BmgT120I	GGNCC	2 cut(s)	282, 1099
BmiI	GGNNCC	3 cut(s)	14, 303, 687
BmrFI	CCNGG	4 cut(s)	280, 299, 551, 1184
BmrI	ACTGGG	2 cut(s)	405, 474
BmsI	GCATC	6 cut(s)	272, 507, 762, 816, 963, 975
BmuI	ACTGGG	2 cut(s)	405, 474
BpiI	GAAGAC	1 cut(s)	494
Bpu14I	TTCGAA	1 cut(s)	1189
BpuEI	CTTGAG	2 cut(s)	744, 990
BpuMI	CCSGG	1 cut(s)	551
BsaI	GGTCTC	1 cut(s)	639
BsaJI	CCNNGG	1 cut(s)	599
BsaWI	WCCGGW	2 cut(s)	648, 931
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 314
Bse118I	RCCGGY	5 cut(s)	84, 238, 307, 931, 1025
Bse1I	ACTGG	3 cut(s)	27, 411, 480
Bse21I	CCTNAGG	1 cut(s)	268
BseBI	CCWGG	3 cut(s)	280, 299, 1184
BseDI	CCNNGG	1 cut(s)	599
BseGI	GGATG	5 cut(s)	219, 263, 922, 997, 1119
BseLI	CCNNNNNNNGG	2 cut(s)	238, 314
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	3 cut(s)	27, 411, 480
BseRI	GAGGAG	4 cut(s)	465, 869, 939, 993
BseX3I	CGGCCG	1 cut(s)	82
BsgI	GTGCAG	1 cut(s)	448
Bsh1236I	CGCG	1 cut(s)	916
Bsh1285I	CGRYCG	1 cut(s)	85
BshFI	GGCC	5 cut(s)	84, 242, 515, 549, 804
BshNI	GGYRCC	2 cut(s)	301, 685
BshTI	ACCGGT	1 cut(s)	931
BsiEI	CGRYCG	1 cut(s)	85
BsiSI	CCGG	9 cut(s)	85, 239, 308, 348, 550, 649, 932, 1026, 1145
BslFI	GGGAC	2 cut(s)	23, 446
BslI	CCNNNNNNNGG	2 cut(s)	238, 314
BsmAI	GTCTC	3 cut(s)	38, 477, 639
BsmBI	CGTCTC	1 cut(s)	38
BsmFI	GGGAC	2 cut(s)	23, 446
BsmI	GAATGC	1 cut(s)	918
BsnI	GGCC	5 cut(s)	84, 242, 515, 549, 804
Bso31I	GGTCTC	1 cut(s)	639
Bsp119I	TTCGAA	1 cut(s)	1189
Bsp143I	GATC	4 cut(s)	184, 406, 732, 1057
BspACI	CCGC	5 cut(s)	305, 634, 962, 980, 992
BspANI	GGCC	5 cut(s)	84, 242, 515, 549, 804
BspCNI	CTCAG	1 cut(s)	281
BspFNI	CGCG	1 cut(s)	916
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	3 cut(s)	14, 303, 687
BspPI	GGATC	2 cut(s)	401, 1052
BspT104I	TTCGAA	1 cut(s)	1189
BspT107I	GGYRCC	2 cut(s)	301, 685
BspTNI	GGTCTC	1 cut(s)	639
BsrBI	CCGCTC	1 cut(s)	634
BsrFI	RCCGGY	5 cut(s)	84, 238, 307, 931, 1025
BsrI	ACTGG	3 cut(s)	27, 411, 480
BssAI	RCCGGY	5 cut(s)	84, 238, 307, 931, 1025
BssECI	CCNNGG	1 cut(s)	599
BssMI	GATC	4 cut(s)	184, 406, 732, 1057
BssT1I	CCWWGG	1 cut(s)	599
Bst2UI	CCWGG	3 cut(s)	280, 299, 1184
Bst4CI	ACNGT	1 cut(s)	1176
Bst6I	CTCTTC	2 cut(s)	498, 637
BstBI	TTCGAA	1 cut(s)	1189
BstC8I	GCNNGC	3 cut(s)	95, 309, 606
BstDEI	CTNAG	1 cut(s)	268
BstF5I	GGATG	5 cut(s)	219, 263, 922, 997, 1119
BstFNI	CGCG	1 cut(s)	916
BstHHI	GCGC	2 cut(s)	313, 918
BstKTI	GATC	4 cut(s)	187, 409, 735, 1060
BstMAI	GTCTC	3 cut(s)	38, 477, 639
BstMBI	GATC	4 cut(s)	184, 406, 732, 1057
BstMCI	CGRYCG	1 cut(s)	85
BstMWI	GCNNNNNNNGC	5 cut(s)	90, 109, 850, 853, 1154
BstNI	CCWGG	3 cut(s)	280, 299, 1184
BstNSI	RCATGY	3 cut(s)	97, 198, 404
BstSCI	CCNGG	4 cut(s)	278, 297, 549, 1182
BstSFI	CTRYAG	1 cut(s)	1149
BstUI	CGCG	1 cut(s)	916
BstV2I	GAAGAC	1 cut(s)	494
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
BstZI	CGGCCG	1 cut(s)	82
Bsu36I	CCTNAGG	1 cut(s)	268
BsuRI	GGCC	5 cut(s)	84, 242, 515, 549, 804
BtsCI	GGATG	5 cut(s)	219, 263, 922, 997, 1119
Cac8I	GCNNGC	3 cut(s)	95, 309, 606
CciI	TCATGA	1 cut(s)	391
CfoI	GCGC	2 cut(s)	313, 918
Cfr10I	RCCGGY	5 cut(s)	84, 238, 307, 931, 1025
Cfr13I	GGNCC	2 cut(s)	282, 1099
CseI	GACGC	1 cut(s)	1146
CsiI	ACCWGGT	1 cut(s)	1182
Csp6I	GTAC	1 cut(s)	302
CspAI	ACCGGT	1 cut(s)	931
CviAII	CATG	9 cut(s)	94, 98, 195, 227, 392, 401, 793, 814, 958
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	1 cut(s)	268
DpnI	GATC	4 cut(s)	186, 408, 734, 1059
DpnII	GATC	4 cut(s)	184, 406, 732, 1057
DrdI	GACNNNNNNGTC	1 cut(s)	293
DseDI	GACNNNNNNGTC	1 cut(s)	293
EaeI	YGGCCR	4 cut(s)	82, 240, 547, 802
EagI	CGGCCG	1 cut(s)	82
Eam1104I	CTCTTC	2 cut(s)	498, 637
EarI	CTCTTC	2 cut(s)	498, 637
EclXI	CGGCCG	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	599
Eco31I	GGTCTC	1 cut(s)	639
Eco47I	GGWCC	2 cut(s)	282, 1099
Eco52I	CGGCCG	1 cut(s)	82
Eco81I	CCTNAGG	1 cut(s)	268
EcoRII	CCWGG	3 cut(s)	278, 297, 1182
EcoT14I	CCWWGG	1 cut(s)	599
EcoT22I	ATGCAT	2 cut(s)	99, 777
ErhI	CCWWGG	1 cut(s)	599
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	9 cut(s)	97, 101, 198, 230, 395, 404, 796, 817, 961
FaqI	GGGAC	2 cut(s)	23, 446
FatI	CATG	9 cut(s)	93, 97, 194, 226, 391, 400, 792, 813, 957
FauNDI	CATATG	3 cut(s)	140, 807, 888
FbaI	TGATCA	1 cut(s)	732
FokI	GGATG	5 cut(s)	206, 250, 909, 984, 1126
FspBI	CTAG	3 cut(s)	170, 1076, 1198
GlaI	GCGC	2 cut(s)	312, 917
HaeIII	GGCC	5 cut(s)	84, 242, 515, 549, 804
HapII	CCGG	9 cut(s)	85, 239, 308, 348, 550, 649, 932, 1026, 1145
HgaI	GACGC	1 cut(s)	1146
HhaI	GCGC	2 cut(s)	313, 918
Hin1II	CATG	9 cut(s)	97, 101, 198, 230, 395, 404, 796, 817, 961
Hin6I	GCGC	2 cut(s)	311, 916
HinP1I	GCGC	2 cut(s)	311, 916
HindIII	AAGCTT	1 cut(s)	711
HinfI	GANTC	4 cut(s)	173, 344, 470, 509
HpaII	CCGG	9 cut(s)	85, 239, 308, 348, 550, 649, 932, 1026, 1145
HphI	GGTGA	1 cut(s)	742
Hpy166II	GTNNAC	2 cut(s)	453, 584
Hpy188I	TCNGA	5 cut(s)	343, 631, 870, 1045, 1057
Hpy188III	TCNNGA	1 cut(s)	392
Hpy8I	GTNNAC	2 cut(s)	453, 584
HpyAV	CCTTC	1 cut(s)	1185
HpyCH4III	ACNGT	1 cut(s)	1176
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	9 cut(s)	4, 97, 263, 404, 429, 676, 695, 745, 775
HpyF10VI	GCNNNNNNNGC	5 cut(s)	90, 109, 850, 853, 1154
HpyF3I	CTNAG	1 cut(s)	268
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	9 cut(s)	97, 101, 198, 230, 395, 404, 796, 817, 961
HspAI	GCGC	2 cut(s)	311, 916
KpnI	GGTACC	1 cut(s)	305
KroI	GCCGGC	1 cut(s)	307
KroNI	GCCGGC	1 cut(s)	309
Ksp22I	TGATCA	1 cut(s)	732
Kzo9I	GATC	4 cut(s)	184, 406, 732, 1057
LmnI	GCTCC	2 cut(s)	144, 150
LweI	GCATC	6 cut(s)	272, 507, 762, 816, 963, 975
MabI	ACCWGGT	1 cut(s)	1182
MaeI	CTAG	3 cut(s)	170, 1076, 1198
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	7 cut(s)	58, 161, 206, 518, 873, 1138, 1170
MalI	GATC	4 cut(s)	186, 408, 734, 1059
MbiI	CCGCTC	1 cut(s)	634
MboI	GATC	4 cut(s)	184, 406, 732, 1057
MboII	GAAGA	7 cut(s)	107, 407, 499, 515, 654, 673, 854
MfeI	CAATTG	1 cut(s)	177
MflI	RGATCY	1 cut(s)	406
MlsI	TGGCCA	1 cut(s)	804
MluCI	AATT	5 cut(s)	49, 177, 364, 787, 837
MluNI	TGGCCA	1 cut(s)	804
MlyI	GAGTC	1 cut(s)	479
Mox20I	TGGCCA	1 cut(s)	804
Mph1103I	ATGCAT	2 cut(s)	99, 777
MreI	CGCCGGCG	1 cut(s)	307
MroNI	GCCGGC	1 cut(s)	307
MscI	TGGCCA	1 cut(s)	804
MseI	TTAA	1 cut(s)	654
MslI	CAYNNNNRTG	2 cut(s)	204, 818
Msp20I	TGGCCA	1 cut(s)	804
MspA1I	CMGCKG	1 cut(s)	982
MspI	CCGG	9 cut(s)	85, 239, 308, 348, 550, 649, 932, 1026, 1145
MspR9I	CCNGG	4 cut(s)	280, 299, 551, 1184
MunI	CAATTG	1 cut(s)	177
Mva1269I	GAATGC	1 cut(s)	918
MvaI	CCWGG	3 cut(s)	280, 299, 1184
MvnI	CGCG	1 cut(s)	916
MwoI	GCNNNNNNNGC	5 cut(s)	90, 109, 850, 853, 1154
NaeI	GCCGGC	1 cut(s)	309
NciI	CCSGG	1 cut(s)	551
NdeI	CATATG	3 cut(s)	140, 807, 888
NdeII	GATC	4 cut(s)	184, 406, 732, 1057
NgoMIV	GCCGGC	1 cut(s)	307
NlaIII	CATG	9 cut(s)	97, 101, 198, 230, 395, 404, 796, 817, 961
NlaIV	GGNNCC	3 cut(s)	14, 303, 687
NmuCI	GTSAC	7 cut(s)	58, 161, 206, 518, 873, 1138, 1170
NsiI	ATGCAT	2 cut(s)	99, 777
NspI	RCATGY	3 cut(s)	97, 198, 404
NspV	TTCGAA	1 cut(s)	1189
OliI	CACNNNNGTG	1 cut(s)	204
PaeI	GCATGC	1 cut(s)	97
PagI	TCATGA	1 cut(s)	391
PctI	GAATGC	1 cut(s)	918
PdiI	GCCGGC	1 cut(s)	309
PfeI	GAWTC	3 cut(s)	173, 344, 509
PinAI	ACCGGT	1 cut(s)	931
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
Psp6I	CCWGG	3 cut(s)	278, 297, 1182
PspGI	CCWGG	3 cut(s)	278, 297, 1182
PspN4I	GGNNCC	3 cut(s)	14, 303, 687
PspPI	GGNCC	2 cut(s)	282, 1099
PsuI	RGATCY	1 cut(s)	406
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
RseI	CAYNNNNRTG	2 cut(s)	204, 818
SaqAI	TTAA	1 cut(s)	654
Sau3AI	GATC	4 cut(s)	184, 406, 732, 1057
Sau96I	GGNCC	2 cut(s)	282, 1099
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	4 cut(s)	280, 299, 551, 1184
SexAI	ACCWGGT	1 cut(s)	1182
SfaNI	GCATC	6 cut(s)	272, 507, 762, 816, 963, 975
SfcI	CTRYAG	1 cut(s)	1149
SfuI	TTCGAA	1 cut(s)	1189
SgrAI	CRCCGGYG	1 cut(s)	307
SinI	GGWCC	2 cut(s)	282, 1099
SmiMI	CAYNNNNRTG	2 cut(s)	204, 818
SmlI	CTYRAG	2 cut(s)	759, 1005
SmoI	CTYRAG	2 cut(s)	759, 1005
SphI	GCATGC	1 cut(s)	97
Sse9I	AATT	5 cut(s)	49, 177, 364, 787, 837
SsiI	CCGC	5 cut(s)	305, 634, 962, 980, 992
SspMI	CTAG	3 cut(s)	170, 1076, 1198
StyD4I	CCNGG	4 cut(s)	278, 297, 549, 1182
StyI	CCWWGG	1 cut(s)	599
TaaI	ACNGT	1 cut(s)	1176
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	5 cut(s)	74, 183, 254, 501, 1189
TaqII	GACCGA	2 cut(s)	299, 327
TasI	AATT	5 cut(s)	49, 177, 364, 787, 837
TauI	GCSGC	1 cut(s)	964
TfiI	GAWTC	3 cut(s)	173, 344, 509
Tru1I	TTAA	1 cut(s)	654
Tru9I	TTAA	1 cut(s)	654
TseFI	GTSAC	7 cut(s)	58, 161, 206, 518, 873, 1138, 1170
Tsp45I	GTSAC	7 cut(s)	58, 161, 206, 518, 873, 1138, 1170
TspGWI	ACGGA	1 cut(s)	537
VpaK11BI	GGWCC	2 cut(s)	282, 1099
XapI	RAATTY	2 cut(s)	787, 837
XceI	RCATGY	3 cut(s)	97, 198, 404
XspI	CTAG	3 cut(s)	170, 1076, 1198
Zsp2I	ATGCAT	2 cut(s)	99, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.