transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G61270 AT5G61270 AT5G61270 |
| fragaria_vesca | FvH4_5g14360 |
| malus_domestica | MD06G1199400.v1.1 MD14G1208000.v1.1 |
| prunus_persica | Prupe.5G200100_v2.0.a1 |
| pyrus_communis | pycom06g17620 pycom14g17170 |
| rosa_chinensis | RchiOBHm_Chr7g0182341 |
| rosa_laevigata | RLG00000005129 |
| rosa_multiflora | Rmu_sc0002070.1_g000014 |
| rosa_roxburghii | Rroxscaffold_3G00271290 |
| rosa_rugosa | Rorug06G0447100 |
| rosa_samantha | Rh7AG050200 Rh7AG050400 Rh7BG050200 Rh7CG051500 Rh7CG051700 Rh7DG049400 |
| rosa_wichuraiana | Rw7G004110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 1555, 1906 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 557 |
| AccBSI | CCGCTC | 1 cut(s) | 1861 |
| AccII | CGCG | 1 cut(s) | 1747 |
| AciI | CCGC | 3 cut(s) | 293, 1859, 1904 |
| AclWI | GGATC | 6 cut(s) | 408, 676, 1220, 1453, 1529, 1964 |
| AcoI | YGGCCR | 2 cut(s) | 838, 1186 |
| AcsI | RAATTY | 2 cut(s) | 613, 1135 |
| AcuI | CTGAAG | 1 cut(s) | 1197 |
| AcyI | GRCGYC | 1 cut(s) | 1907 |
| AfaI | GTAC | 5 cut(s) | 1125, 1225, 1267, 1273, 2042 |
| AfeI | AGCGCT | 1 cut(s) | 1075 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 557, 590 |
| AgeI | ACCGGT | 1 cut(s) | 690 |
| AgsI | TTSAA | 9 cut(s) | 25, 374, 483, 618, 1352, 1587, 1625, 1637, 2023 |
| AhlI | ACTAGT | 2 cut(s) | 1268, 1829 |
| AjnI | CCWGG | 3 cut(s) | 542, 1061, 1771 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 174, 206 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 406, 438 |
| AlwI | GGATC | 6 cut(s) | 408, 676, 1220, 1453, 1529, 1964 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 305, 1221 |
| Aor51HI | AGCGCT | 1 cut(s) | 1075 |
| AoxI | GGCC | 5 cut(s) | 416, 491, 572, 838, 1186 |
| ApoI | RAATTY | 2 cut(s) | 613, 1135 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 376, 408 |
| AsiGI | ACCGGT | 1 cut(s) | 690 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1620 |
| AspLEI | GCGC | 4 cut(s) | 1076, 1747, 1749, 1909 |
| AspS9I | GGNCC | 3 cut(s) | 384, 505, 2014 |
| AsuC2I | CCSGG | 1 cut(s) | 243 |
| AsuHPI | GGTGA | 2 cut(s) | 16, 1612 |
| AvaII | GGWCC | 3 cut(s) | 384, 505, 2014 |
| BaeGI | GKGCMC | 1 cut(s) | 865 |
| BalI | TGGCCA | 1 cut(s) | 840 |
| BanI | GGYRCC | 2 cut(s) | 1555, 1906 |
| BccI | CCATC | 7 cut(s) | 547, 584, 754, 1110, 1493, 2023, 2089 |
| BceAI | ACGGC | 5 cut(s) | 1180, 1437, 1446, 1487, 2082 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1946, 1980 |
| BciT130I | CCWGG | 3 cut(s) | 544, 1063, 1773 |
| BciVI | GTATCC | 1 cut(s) | 558 |
| BcnI | CCSGG | 1 cut(s) | 243 |
| BcuI | ACTAGT | 2 cut(s) | 1268, 1829 |
| BfmI | CTRYAG | 3 cut(s) | 585, 1544, 1850 |
| BfoI | RGCGCY | 2 cut(s) | 1077, 1910 |
| BfuI | GTATCC | 1 cut(s) | 558 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 499 |
| BlpI | GCTNAGC | 1 cut(s) | 984 |
| BmcAI | AGTACT | 2 cut(s) | 1267, 1273 |
| Bme1390I | CCNGG | 4 cut(s) | 243, 544, 1063, 1773 |
| Bme18I | GGWCC | 3 cut(s) | 384, 505, 2014 |
| BmgT120I | GGNCC | 3 cut(s) | 384, 505, 2014 |
| BmiI | GGNNCC | 3 cut(s) | 125, 1557, 1908 |
| BmrFI | CCNGG | 4 cut(s) | 243, 544, 1063, 1773 |
| BmsI | GCATC | 9 cut(s) | 20, 77, 643, 937, 1163, 1677, 1876, 1889, 1908 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 984 |
| BpuMI | CCSGG | 1 cut(s) | 243 |
| Bsa29I | ATCGAT | 1 cut(s) | 14 |
| BsaBI | GATNNNNATC | 2 cut(s) | 594, 1465 |
| BsaHI | GRCGYC | 1 cut(s) | 1907 |
| BsaJI | CCNNGG | 1 cut(s) | 242 |
| BsaWI | WCCGGW | 3 cut(s) | 690, 1160, 1762 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 352, 382, 406, 436 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 557, 590 |
| Bse118I | RCCGGY | 1 cut(s) | 690 |
| Bse1I | ACTGG | 2 cut(s) | 227, 1092 |
| Bse3DI | GCAATG | 3 cut(s) | 1288, 1378, 1447 |
| Bse8I | GATNNNNATC | 2 cut(s) | 594, 1465 |
| BseBI | CCWGG | 3 cut(s) | 544, 1063, 1773 |
| BseCI | ATCGAT | 1 cut(s) | 14 |
| BseDI | CCNNGG | 1 cut(s) | 242 |
| BseGI | GGATG | 6 cut(s) | 92, 539, 1154, 1485, 1867, 2034 |
| BseJI | GATNNNNATC | 2 cut(s) | 594, 1465 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 557, 590 |
| BseMI | GCAATG | 3 cut(s) | 1288, 1378, 1447 |
| BseMII | CTCAG | 2 cut(s) | 683, 975 |
| BseNI | ACTGG | 2 cut(s) | 227, 1092 |
| BsePI | GCGCGC | 1 cut(s) | 1745 |
| BseRI | GAGGAG | 4 cut(s) | 119, 373, 781, 867 |
| BseSI | GKGCMC | 1 cut(s) | 865 |
| BsgI | GTGCAG | 1 cut(s) | 450 |
| Bsh1236I | CGCG | 1 cut(s) | 1747 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1232 |
| BshFI | GGCC | 5 cut(s) | 418, 493, 574, 840, 1188 |
| BshNI | GGYRCC | 2 cut(s) | 1555, 1906 |
| BshTI | ACCGGT | 1 cut(s) | 690 |
| BshVI | ATCGAT | 1 cut(s) | 14 |
| BsiEI | CGRYCG | 1 cut(s) | 1232 |
| BsiSI | CCGG | 5 cut(s) | 242, 691, 1161, 1185, 1763 |
| BslFI | GGGAC | 2 cut(s) | 944, 1328 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 557, 590 |
| BsmFI | GGGAC | 2 cut(s) | 944, 1328 |
| BsmI | GAATGC | 2 cut(s) | 1704, 1803 |
| BsnI | GGCC | 5 cut(s) | 418, 493, 574, 840, 1188 |
| Bsp1286I | GDGCHC | 1 cut(s) | 865 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 984 |
| BspACI | CCGC | 3 cut(s) | 293, 1859, 1904 |
| BspANI | GGCC | 5 cut(s) | 418, 493, 574, 840, 1188 |
| BspCNI | CTCAG | 2 cut(s) | 682, 976 |
| BspDI | ATCGAT | 1 cut(s) | 14 |
| BspFNI | CGCG | 1 cut(s) | 1747 |
| BspHI | TCATGA | 1 cut(s) | 1288 |
| BspLI | GGNNCC | 3 cut(s) | 125, 1557, 1908 |
| BspMAI | CTGCAG | 1 cut(s) | 589 |
| BspPI | GGATC | 6 cut(s) | 408, 676, 1220, 1453, 1529, 1964 |
| BspT107I | GGYRCC | 2 cut(s) | 1555, 1906 |
| BsrBI | CCGCTC | 1 cut(s) | 1861 |
| BsrDI | GCAATG | 3 cut(s) | 1288, 1378, 1447 |
| BsrFI | RCCGGY | 1 cut(s) | 690 |
| BsrI | ACTGG | 2 cut(s) | 227, 1092 |
| BssAI | RCCGGY | 1 cut(s) | 690 |
| BssECI | CCNNGG | 1 cut(s) | 242 |
| BssHII | GCGCGC | 1 cut(s) | 1745 |
| BssNI | GRCGYC | 1 cut(s) | 1907 |
| Bst2UI | CCWGG | 3 cut(s) | 544, 1063, 1773 |
| Bst4CI | ACNGT | 6 cut(s) | 83, 1208, 1223, 2040, 2045, 2088 |
| Bst6I | CTCTTC | 2 cut(s) | 885, 1507 |
| BstACI | GRCGYC | 1 cut(s) | 1907 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 305, 719 |
| BstC8I | GCNNGC | 4 cut(s) | 1190, 1747, 1778, 2074 |
| BstDEI | CTNAG | 3 cut(s) | 523, 669, 984 |
| BstF5I | GGATG | 6 cut(s) | 92, 539, 1154, 1485, 1867, 2034 |
| BstFNI | CGCG | 1 cut(s) | 1747 |
| BstH2I | RGCGCY | 2 cut(s) | 1077, 1910 |
| BstHHI | GCGC | 4 cut(s) | 1076, 1747, 1749, 1909 |
| BstMCI | CGRYCG | 1 cut(s) | 1232 |
| BstNI | CCWGG | 3 cut(s) | 544, 1063, 1773 |
| BstNSI | RCATGY | 1 cut(s) | 1116 |
| BstSCI | CCNGG | 4 cut(s) | 241, 542, 1061, 1771 |
| BstSFI | CTRYAG | 3 cut(s) | 585, 1544, 1850 |
| BstSLI | GKGCMC | 1 cut(s) | 865 |
| BstUI | CGCG | 1 cut(s) | 1747 |
| BstX2I | RGATCY | 1 cut(s) | 681 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1048 |
| BstYI | RGATCY | 1 cut(s) | 681 |
| Bsu15I | ATCGAT | 1 cut(s) | 14 |
| BsuI | GTATCC | 1 cut(s) | 558 |
| BsuRI | GGCC | 5 cut(s) | 418, 493, 574, 840, 1188 |
| BsuTUI | ATCGAT | 1 cut(s) | 14 |
| BtsCI | GGATG | 6 cut(s) | 92, 539, 1154, 1485, 1867, 2034 |
| BtsI | GCAGTG | 2 cut(s) | 642, 1041 |
| BtsIMutI | CAGTG | 5 cut(s) | 88, 642, 1041, 1085, 2036 |
| Cac8I | GCNNGC | 4 cut(s) | 1190, 1747, 1778, 2074 |
| CaiI | CAGNNNCTG | 2 cut(s) | 305, 1221 |
| CciI | TCATGA | 1 cut(s) | 1288 |
| CfoI | GCGC | 4 cut(s) | 1076, 1747, 1749, 1909 |
| Cfr10I | RCCGGY | 1 cut(s) | 690 |
| Cfr13I | GGNCC | 3 cut(s) | 384, 505, 2014 |
| ClaI | ATCGAT | 1 cut(s) | 14 |
| Csp6I | GTAC | 5 cut(s) | 1124, 1224, 1266, 1272, 2041 |
| CspAI | ACCGGT | 1 cut(s) | 690 |
| CviQI | GTAC | 5 cut(s) | 1124, 1224, 1266, 1272, 2041 |
| DdeI | CTNAG | 3 cut(s) | 523, 669, 984 |
| DinI | GGCGCC | 1 cut(s) | 1908 |
| EaeI | YGGCCR | 2 cut(s) | 838, 1186 |
| Eam1104I | CTCTTC | 2 cut(s) | 885, 1507 |
| EarI | CTCTTC | 2 cut(s) | 885, 1507 |
| Eco147I | AGGCCT | 1 cut(s) | 574 |
| Eco47I | GGWCC | 3 cut(s) | 384, 505, 2014 |
| Eco47III | AGCGCT | 1 cut(s) | 1075 |
| Eco57I | CTGAAG | 1 cut(s) | 1197 |
| EcoRII | CCWGG | 3 cut(s) | 542, 1061, 1771 |
| EcoT22I | ATGCAT | 1 cut(s) | 1869 |
| EgeI | GGCGCC | 1 cut(s) | 1908 |
| EheI | GGCGCC | 1 cut(s) | 1908 |
| FaqI | GGGAC | 2 cut(s) | 944, 1328 |
| FauNDI | CATATG | 1 cut(s) | 1674 |
| FokI | GGATG | 6 cut(s) | 99, 526, 1141, 1472, 1854, 2041 |
| GlaI | GCGC | 4 cut(s) | 1075, 1746, 1748, 1908 |
| HaeII | RGCGCY | 2 cut(s) | 1077, 1910 |
| HaeIII | GGCC | 5 cut(s) | 418, 493, 574, 840, 1188 |
| HapII | CCGG | 5 cut(s) | 242, 691, 1161, 1185, 1763 |
| HhaI | GCGC | 4 cut(s) | 1076, 1747, 1749, 1909 |
| Hin1I | GRCGYC | 1 cut(s) | 1907 |
| Hin6I | GCGC | 4 cut(s) | 1074, 1745, 1747, 1907 |
| HinP1I | GCGC | 4 cut(s) | 1074, 1745, 1747, 1907 |
| HincII | GTYRAC | 1 cut(s) | 2048 |
| HindII | GTYRAC | 1 cut(s) | 2048 |
| HindIII | AAGCTT | 2 cut(s) | 531, 1581 |
| HinfI | GANTC | 9 cut(s) | 53, 893, 1091, 1181, 1235, 1352, 1382, 1759, 1958 |
| HpaII | CCGG | 5 cut(s) | 242, 691, 1161, 1185, 1763 |
| HphI | GGTGA | 2 cut(s) | 16, 1612 |
| Hpy166II | GTNNAC | 2 cut(s) | 1457, 2048 |
| Hpy188I | TCNGA | 7 cut(s) | 672, 1234, 1240, 1501, 1521, 1530, 1957 |
| Hpy8I | GTNNAC | 2 cut(s) | 1457, 2048 |
| Hpy99I | CGWCG | 3 cut(s) | 1382, 1598, 1808 |
| HpyAV | CCTTC | 2 cut(s) | 225, 1993 |
| HpyCH4III | ACNGT | 6 cut(s) | 83, 1208, 1223, 2040, 2045, 2088 |
| HpyCH4IV | ACGT | 2 cut(s) | 978, 1806 |
| HpyF3I | CTNAG | 3 cut(s) | 523, 669, 984 |
| HpySE526I | ACGT | 2 cut(s) | 978, 1806 |
| Hsp92I | GRCGYC | 1 cut(s) | 1907 |
| HspAI | GCGC | 4 cut(s) | 1074, 1745, 1747, 1907 |
| KasI | GGCGCC | 1 cut(s) | 1906 |
| LmnI | GCTCC | 7 cut(s) | 271, 458, 476, 784, 854, 1065, 1362 |
| LweI | GCATC | 9 cut(s) | 20, 77, 643, 937, 1163, 1677, 1876, 1889, 1908 |
| MaeII | ACGT | 2 cut(s) | 978, 1806 |
| MaeIII | GTNAC | 1 cut(s) | 1079 |
| MbiI | CCGCTC | 1 cut(s) | 1861 |
| MflI | RGATCY | 1 cut(s) | 681 |
| MhlI | GDGCHC | 1 cut(s) | 865 |
| MlsI | TGGCCA | 1 cut(s) | 840 |
| MluCI | AATT | 8 cut(s) | 174, 249, 338, 613, 714, 1014, 1135, 1951 |
| MluNI | TGGCCA | 1 cut(s) | 840 |
| Mly113I | GGCGCC | 1 cut(s) | 1907 |
| MlyI | GAGTC | 3 cut(s) | 902, 1753, 1952 |
| MmeI | TCCRAC | 7 cut(s) | 172, 602, 966, 975, 1190, 1263, 1980 |
| Mox20I | TGGCCA | 1 cut(s) | 840 |
| Mph1103I | ATGCAT | 1 cut(s) | 1869 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1620 |
| MscI | TGGCCA | 1 cut(s) | 840 |
| MseI | TTAA | 5 cut(s) | 93, 822, 903, 1139, 2098 |
| MslI | CAYNNNNRTG | 3 cut(s) | 408, 630, 1754 |
| Msp20I | TGGCCA | 1 cut(s) | 840 |
| MspA1I | CMGCKG | 1 cut(s) | 305 |
| MspI | CCGG | 5 cut(s) | 242, 691, 1161, 1185, 1763 |
| MspR9I | CCNGG | 4 cut(s) | 243, 544, 1063, 1773 |
| Mva1269I | GAATGC | 2 cut(s) | 1704, 1803 |
| MvaI | CCWGG | 3 cut(s) | 544, 1063, 1773 |
| MvnI | CGCG | 1 cut(s) | 1747 |
| NarI | GGCGCC | 1 cut(s) | 1907 |
| NciI | CCSGG | 1 cut(s) | 243 |
| NdeI | CATATG | 1 cut(s) | 1674 |
| NlaIV | GGNNCC | 3 cut(s) | 125, 1557, 1908 |
| NmeAIII | GCCGAG | 2 cut(s) | 418, 444 |
| NmuCI | GTSAC | 1 cut(s) | 1079 |
| NsiI | ATGCAT | 1 cut(s) | 1869 |
| NspI | RCATGY | 1 cut(s) | 1116 |
| PagI | TCATGA | 1 cut(s) | 1288 |
| PauI | GCGCGC | 1 cut(s) | 1745 |
| PceI | AGGCCT | 1 cut(s) | 574 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1471 |
| PctI | GAATGC | 2 cut(s) | 1704, 1803 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1620 |
| PfeI | GAWTC | 6 cut(s) | 53, 1091, 1181, 1235, 1352, 1382 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 557 |
| PinAI | ACCGGT | 1 cut(s) | 690 |
| Ple19I | CGATCG | 1 cut(s) | 1232 |
| PleI | GAGTC | 3 cut(s) | 901, 1753, 1952 |
| PluTI | GGCGCC | 1 cut(s) | 1910 |
| PpsI | GAGTC | 3 cut(s) | 901, 1753, 1952 |
| Psp6I | CCWGG | 3 cut(s) | 542, 1061, 1771 |
| PspGI | CCWGG | 3 cut(s) | 542, 1061, 1771 |
| PspN4I | GGNNCC | 3 cut(s) | 125, 1557, 1908 |
| PspPI | GGNCC | 3 cut(s) | 384, 505, 2014 |
| PstI | CTGCAG | 1 cut(s) | 589 |
| PstNI | CAGNNNCTG | 2 cut(s) | 305, 1221 |
| PsuI | RGATCY | 1 cut(s) | 681 |
| PteI | GCGCGC | 1 cut(s) | 1745 |
| PvuI | CGATCG | 1 cut(s) | 1232 |
| PvuII | CAGCTG | 1 cut(s) | 305 |
| RsaI | GTAC | 5 cut(s) | 1125, 1225, 1267, 1273, 2042 |
| RsaNI | GTAC | 5 cut(s) | 1124, 1224, 1266, 1272, 2041 |
| RseI | CAYNNNNRTG | 3 cut(s) | 408, 630, 1754 |
| SaqAI | TTAA | 5 cut(s) | 93, 822, 903, 1139, 2098 |
| Sau96I | GGNCC | 3 cut(s) | 384, 505, 2014 |
| ScaI | AGTACT | 2 cut(s) | 1267, 1273 |
| SchI | GAGTC | 3 cut(s) | 902, 1753, 1952 |
| ScrFI | CCNGG | 4 cut(s) | 243, 544, 1063, 1773 |
| SduI | GDGCHC | 1 cut(s) | 865 |
| SfaNI | GCATC | 9 cut(s) | 20, 77, 643, 937, 1163, 1677, 1876, 1889, 1908 |
| SfcI | CTRYAG | 3 cut(s) | 585, 1544, 1850 |
| SfoI | GGCGCC | 1 cut(s) | 1908 |
| SinI | GGWCC | 3 cut(s) | 384, 505, 2014 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 408, 630, 1754 |
| SpeI | ACTAGT | 2 cut(s) | 1268, 1829 |
| Sse9I | AATT | 8 cut(s) | 174, 249, 338, 613, 714, 1014, 1135, 1951 |
| SseBI | AGGCCT | 1 cut(s) | 574 |
| SsiI | CCGC | 3 cut(s) | 293, 1859, 1904 |
| SspDI | GGCGCC | 1 cut(s) | 1906 |
| StuI | AGGCCT | 1 cut(s) | 574 |
| StyD4I | CCNGG | 4 cut(s) | 241, 542, 1061, 1771 |
| TaaI | ACNGT | 6 cut(s) | 83, 1208, 1223, 2040, 2045, 2088 |
| TaiI | ACGT | 2 cut(s) | 981, 1809 |
| TaqI | TCGA | 5 cut(s) | 14, 1593, 1803, 2055, 2090 |
| TaqII | GACCGA | 1 cut(s) | 1316 |
| TasI | AATT | 8 cut(s) | 174, 249, 338, 613, 714, 1014, 1135, 1951 |
| TatI | WGTACW | 2 cut(s) | 1265, 1271 |
| TauI | GCSGC | 2 cut(s) | 1861, 1907 |
| TfiI | GAWTC | 6 cut(s) | 53, 1091, 1181, 1235, 1352, 1382 |
| Tru1I | TTAA | 5 cut(s) | 93, 822, 903, 1139, 2098 |
| Tru9I | TTAA | 5 cut(s) | 93, 822, 903, 1139, 2098 |
| TscAI | CASTG | 5 cut(s) | 88, 642, 1048, 1092, 2043 |
| TseFI | GTSAC | 1 cut(s) | 1079 |
| Tsp45I | GTSAC | 1 cut(s) | 1079 |
| TspRI | CASTG | 5 cut(s) | 88, 642, 1048, 1092, 2043 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 557 |
| VpaK11BI | GGWCC | 3 cut(s) | 384, 505, 2014 |
| XapI | RAATTY | 2 cut(s) | 613, 1135 |
| XceI | RCATGY | 1 cut(s) | 1116 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 322 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1620 |
| ZrmI | AGTACT | 2 cut(s) | 1267, 1273 |
| Zsp2I | ATGCAT | 1 cut(s) | 1869 |