Rmu_sc0002070.1_g000014

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002070.1
OG0009848
Physical Location & Seq
Forward (+)
70115 .. 71552
1438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002070.1_g000014.1.cds

Sequence Viewer

Length: 261 bp
atgaggacagcgagagatcaagtcagtgttggtgggaaaaactcccttgaggaacttgggttggatgagcttcagacattgaaggctgcaatggaggagctcaaggagaaagtatccaaattgtggaaactctataaggccttcattcctgcagatattaaaaccgaaaaggaaattcaagaggacatggtaatgcagtggaaaccaaagcagatgcatgctcgggagaaagctcagatgaagaagattcagaaccggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

10.1

Weight (kDa)

9.4

Isoelectric Point (pI)

32.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009848)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G61270 AT5G61270 AT5G61270
fragaria_vesca FvH4_5g14360
malus_domestica MD06G1199400.v1.1 MD14G1208000.v1.1
prunus_persica Prupe.5G200100_v2.0.a1
pyrus_communis pycom06g17620 pycom14g17170
rosa_chinensis RchiOBHm_Chr7g0182341
rosa_laevigata RLG00000005129
rosa_multiflora Rmu_sc0002070.1_g000014
rosa_roxburghii Rroxscaffold_3G00271290
rosa_rugosa Rorug06G0447100
rosa_samantha Rh7AG050200 Rh7AG050400 Rh7BG050200 Rh7CG051500 Rh7CG051700 Rh7DG049400
rosa_wichuraiana Rw7G004110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 123
AcsI RAATTY 1 cut(s) 174
AcuI CTGAAG 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 123
AgeI ACCGGT 1 cut(s) 255
AgsI TTSAA 2 cut(s) 82, 179
AluBI AGCT 3 cut(s) 70, 100, 233
AluI AGCT 3 cut(s) 70, 100, 233
Alw21I GWGCWC 1 cut(s) 102
Ama87I CYCGRG 1 cut(s) 222
AoxI GGCC 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 86
ApoI RAATTY 1 cut(s) 174
AsiGI ACCGGT 1 cut(s) 255
AvaI CYCGRG 1 cut(s) 222
BanII GRGCYC 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 73
BciVI GTATCC 1 cut(s) 124
BfmI CTRYAG 1 cut(s) 150
BfuI GTATCC 1 cut(s) 124
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
BmeT110I CYCGRG 1 cut(s) 222
BmsI GCATC 1 cut(s) 204
BpuEI CTTGAG 2 cut(s) 68, 86
BsaWI WCCGGW 1 cut(s) 255
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse118I RCCGGY 1 cut(s) 255
Bse3DI GCAATG 1 cut(s) 96
BseGI GGATG 1 cut(s) 70
BseLI CCNNNNNNNGG 1 cut(s) 123
BseMI GCAATG 1 cut(s) 96
BseMII CTCAG 1 cut(s) 248
BseRI GAGGAG 1 cut(s) 110
BseXI GCAGC 1 cut(s) 73
BshFI GGCC 1 cut(s) 140
BshTI ACCGGT 1 cut(s) 255
BsiHKAI GWGCWC 1 cut(s) 102
BsiHKCI CYCGRG 1 cut(s) 222
BsiSI CCGG 1 cut(s) 256
BslI CCNNNNNNNGG 1 cut(s) 123
BsnI GGCC 1 cut(s) 140
BsoBI CYCGRG 1 cut(s) 222
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 1 cut(s) 16
BspANI GGCC 1 cut(s) 140
BspCNI CTCAG 1 cut(s) 247
BspMAI CTGCAG 1 cut(s) 154
BsrDI GCAATG 1 cut(s) 96
BsrFI RCCGGY 1 cut(s) 255
BssAI RCCGGY 1 cut(s) 255
BssMI GATC 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 1 cut(s) 234
BstF5I GGATG 1 cut(s) 70
BstKTI GATC 1 cut(s) 19
BstMBI GATC 1 cut(s) 16
BstNSI RCATGY 1 cut(s) 221
BstSFI CTRYAG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 73
BsuI GTATCC 1 cut(s) 124
BsuRI GGCC 1 cut(s) 140
BtsCI GGATG 1 cut(s) 70
BtsI GCAGTG 1 cut(s) 203
BtsIMutI CAGTG 2 cut(s) 31, 203
Cac8I GCNNGC 1 cut(s) 219
Cfr10I RCCGGY 1 cut(s) 255
CspAI ACCGGT 1 cut(s) 255
CviAII CATG 2 cut(s) 187, 218
CviJI RGCY 5 cut(s) 70, 86, 100, 140, 233
CviKI_1 RGCY 5 cut(s) 70, 86, 100, 140, 233
DdeI CTNAG 1 cut(s) 234
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
Ecl136II GAGCTC 1 cut(s) 100
Eco147I AGGCCT 1 cut(s) 140
Eco24I GRGCYC 1 cut(s) 102
Eco53kI GAGCTC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 56
Eco88I CYCGRG 1 cut(s) 222
EcoICRI GAGCTC 1 cut(s) 100
EcoT22I ATGCAT 1 cut(s) 219
EcoT38I GRGCYC 1 cut(s) 102
FaeI CATG 2 cut(s) 190, 221
FaiI YATR 3 cut(s) 135, 188, 219
FatI CATG 2 cut(s) 186, 217
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 1 cut(s) 77
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 87
GluI GCNGC 1 cut(s) 87
HaeIII GGCC 1 cut(s) 140
HapII CCGG 1 cut(s) 256
Hin1II CATG 2 cut(s) 190, 221
HinfI GANTC 1 cut(s) 247
HpaII CCGG 1 cut(s) 256
Hpy188I TCNGA 3 cut(s) 75, 237, 252
Hpy188III TCNNGA 2 cut(s) 179, 224
HpyAV CCTTC 2 cut(s) 76, 151
HpyCH4V TGCA 4 cut(s) 89, 152, 196, 217
HpyF3I CTNAG 1 cut(s) 234
Hsp92II CATG 2 cut(s) 190, 221
Kzo9I GATC 1 cut(s) 16
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 1 cut(s) 162
Lsp1109I GCAGC 1 cut(s) 73
LweI GCATC 1 cut(s) 204
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 2 cut(s) 253, 256
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 2 cut(s) 119, 174
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 3 cut(s) 43, 88, 175
Mph1103I ATGCAT 1 cut(s) 219
MseI TTAA 1 cut(s) 159
MslI CAYNNNNRTG 1 cut(s) 191
MspI CCGG 1 cut(s) 256
NdeII GATC 1 cut(s) 16
NlaIII CATG 2 cut(s) 190, 221
NsiI ATGCAT 1 cut(s) 219
NspI RCATGY 1 cut(s) 221
PaeI GCATGC 1 cut(s) 221
PceI AGGCCT 1 cut(s) 140
PfeI GAWTC 1 cut(s) 247
PflMI CCANNNNNTGG 1 cut(s) 123
PinAI ACCGGT 1 cut(s) 255
PkrI GCNGC 1 cut(s) 88
Psp124BI GAGCTC 1 cut(s) 102
PstI CTGCAG 1 cut(s) 154
RseI CAYNNNNRTG 1 cut(s) 191
SacI GAGCTC 1 cut(s) 102
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 1 cut(s) 16
SduI GDGCHC 1 cut(s) 102
SetI ASST 3 cut(s) 72, 102, 235
SfaNI GCATC 1 cut(s) 204
SfcI CTRYAG 1 cut(s) 150
SmiMI CAYNNNNRTG 1 cut(s) 191
SmlI CTYRAG 2 cut(s) 47, 101
SmoI CTYRAG 2 cut(s) 47, 101
SphI GCATGC 1 cut(s) 221
Sse9I AATT 2 cut(s) 119, 174
SseBI AGGCCT 1 cut(s) 140
SstI GAGCTC 1 cut(s) 102
StuI AGGCCT 1 cut(s) 140
TasI AATT 2 cut(s) 119, 174
TfiI GAWTC 1 cut(s) 247
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 2 cut(s) 31, 203
TseI GCWGC 1 cut(s) 86
TspDTI ATGAA 2 cut(s) 133, 254
TspRI CASTG 2 cut(s) 31, 203
Van91I CCANNNNNTGG 1 cut(s) 123
XapI RAATTY 1 cut(s) 174
XceI RCATGY 1 cut(s) 221
Zsp2I ATGCAT 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.