Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009028

Physical Location & Seq

Genomic Coordinates Forward (+)

8566167 .. 8569833

Gene Structure 3667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g15170.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGCATCACTCAAAAACGGCAGCTCTGCTCTGGTTCATCTCCGCCTTGCTCTTCTTCTCTCTCTTCCAGATGGCCCGTCGGAACTCCGATTCCGCTCGCAGTATTCACCCCTCCGCCTCCGATTCTGCGATTCCGATCAAGGATCGGAGGTCGGCGCTGTACGAGAAGATGGCTAGGGATTTGGACGAGAAAGGTCCGATGTTTCTGAAACGCGGCCAAACCTCTCAGTCTCTGTCGCTCTTCGATCTTTTTACCGTGAAGGATGGATCGGTGGCGCCGGTGCTTAAGGCAGCAGATCCCCCTGTTCGTGCTAATGTGTTGTATCTGAGCTCACACTACTCGCTTCGAATCTCGGAGGCGCTCAAACCTATTCTTGATCCGTACTTTGATAAATTGATCTGGTTTCAGAACTCAAATTTGTATCATTTTAGTATGTTCCACGCCTCGCATCATATTTCACCTGTTCCGGCAACTCAGGATGAGATTGAAGCTGAAGCAGCTGCTGTTGGAGCTGTTGTAGAAGGCCTCTGTCCTTTAAAGATTGTCTTAGACAGAGTGATTTTAACTTCAACAGGTGTGCTTCTTGGATGCTGGCAGGTAGTGTCCGGATCAGATCCTATGACCATCCGTGCAAAACTAAGGACTGCGCTTCCAAGTGCACCTGAGAATCAACTTTATGATGATGCTATTCTTCACACATCATTTGCAAGGCTTTTGGGCGAGCCAAAGGCATCATCCGTGGTGCTCTCCAGTACTTCAGATCAAATCCACTTCTTTCATGAGCTTGTTGATCGTATAAACAACAAACTCCAAGGATTTGAGGCAGTGGTTACTGAGCTCTGGTATGTGGAGGAATTTGATGTTTTGGCTCTTGCATTGAATGGAAGAATGAAGGTGCGCAAGTTCCAACTTGGCTGCGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

308

Amino Acids

34.17

Weight (kDa)

6.83

Isoelectric Point (pI)

45.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74530 AT1G74530 AT1G74530 AT1G74530
fragaria_vesca	FvH4_5g15170
malus_domestica	MD06G1191700.v1.1 MD14G1198100.v1.1
prunus_persica	Prupe.5G190900_v2.0.a1
pyrus_communis	pycom06g16980 pycom14g16450
rosa_chinensis	RchiOBHm_Chr7g0181011
rosa_laevigata	RLG00000005219
rosa_multiflora	Rmu_sc0004056.1_g000001 Rmu_sc0028417.1_g000001 Rmu_sc0036091.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272340
rosa_rugosa	Rorug06G0438500
rosa_samantha	Rh7AG039700 Rh7BG039100 Rh7CG040900 Rh7DG039300
rosa_wichuraiana	Rw7G003270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	899, 919
Acc36I	ACCTGC	1 cut(s)	586
AccB1I	GGYRCC	1 cut(s)	274
AccBSI	CCGCTC	1 cut(s)	95
AccII	CGCG	1 cut(s)	213
AccIII	TCCGGA	1 cut(s)	605
AciI	CCGC	4 cut(s)	42, 93, 114, 213
AclWI	GGATC	6 cut(s)	150, 274, 290, 371, 608, 616
AcoI	YGGCCR	1 cut(s)	214
AcsI	RAATTY	2 cut(s)	415, 854
AcuI	CTGAAG	2 cut(s)	513, 741
AcyI	GRCGYC	1 cut(s)	275
AfaI	GTAC	3 cut(s)	161, 383, 754
AflII	CTTAAG	1 cut(s)	284
AgsI	TTSAA	3 cut(s)	488, 570, 880
AloI	GAACNNNNNNTCC	2 cut(s)	74, 106
AluBI	AGCT	7 cut(s)	23, 330, 491, 500, 512, 784, 838
AluI	AGCT	7 cut(s)	23, 330, 491, 500, 512, 784, 838
Alw21I	GWGCWC	4 cut(s)	332, 661, 747, 840
Alw26I	GTCTC	1 cut(s)	234
Alw44I	GTGCAC	1 cut(s)	657
AlwI	GGATC	6 cut(s)	150, 274, 290, 371, 608, 616
AlwNI	CAGNNNCTG	2 cut(s)	232, 503
Aor13HI	TCCGGA	1 cut(s)	605
AoxI	GGCC	3 cut(s)	72, 214, 523
ApaLI	GTGCAC	1 cut(s)	657
ApeKI	GCWGC	5 cut(s)	20, 290, 497, 500, 915
ApoI	RAATTY	2 cut(s)	415, 854
AspLEI	GCGC	6 cut(s)	157, 277, 361, 649, 900, 920
AspS9I	GGNCC	2 cut(s)	73, 194
AsuHPI	GGTGA	2 cut(s)	98, 450
AsuII	TTCGAA	1 cut(s)	346
AvaII	GGWCC	1 cut(s)	194
BaeGI	GKGCMC	1 cut(s)	661
BanI	GGYRCC	1 cut(s)	274
BanII	GRGCYC	2 cut(s)	332, 840
Bbv12I	GWGCWC	4 cut(s)	332, 661, 747, 840
BbvI	GCAGC	5 cut(s)	32, 302, 487, 509, 902
BccI	CCATC	4 cut(s)	64, 163, 257, 632
BceAI	ACGGC	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	234
BfaI	CTAG	1 cut(s)	174
BfoI	RGCGCY	3 cut(s)	158, 278, 362
BfrI	CTTAAG	1 cut(s)	284
BfuAI	ACCTGC	1 cut(s)	586
BisI	GCNGC	6 cut(s)	21, 214, 291, 498, 501, 916
BlsI	GCNGC	6 cut(s)	22, 215, 292, 499, 502, 917
BmcAI	AGTACT	1 cut(s)	754
Bme18I	GGWCC	1 cut(s)	194
BmgT120I	GGNCC	2 cut(s)	73, 194
BmiI	GGNNCC	1 cut(s)	276
BmsI	GCATC	5 cut(s)	13, 457, 578, 673, 740
BpmI	CTGGAG	1 cut(s)	733
Bpu14I	TTCGAA	1 cut(s)	346
BsaBI	GATNNNNATC	1 cut(s)	134
BsaHI	GRCGYC	1 cut(s)	275
BsaJI	CCNNGG	2 cut(s)	738, 811
BsaWI	WCCGGW	1 cut(s)	605
BsaXI	ACNNNNNCTCC	2 cut(s)	501, 531
Bse118I	RCCGGY	1 cut(s)	277
Bse1I	ACTGG	1 cut(s)	750
Bse8I	GATNNNNATC	1 cut(s)	134
BseAI	TCCGGA	1 cut(s)	605
BseDI	CCNNGG	2 cut(s)	738, 811
BseGI	GGATG	5 cut(s)	268, 484, 593, 624, 734
BseJI	GATNNNNATC	1 cut(s)	134
BseMII	CTCAG	5 cut(s)	239, 317, 488, 654, 825
BseNI	ACTGG	1 cut(s)	750
BseSI	GKGCMC	1 cut(s)	661
BseXI	GCAGC	5 cut(s)	32, 302, 487, 509, 902
Bsh1236I	CGCG	1 cut(s)	213
BshFI	GGCC	3 cut(s)	74, 216, 525
BshNI	GGYRCC	1 cut(s)	274
BsiHKAI	GWGCWC	4 cut(s)	332, 661, 747, 840
BsiSI	CCGG	3 cut(s)	278, 467, 606
BsmAI	GTCTC	1 cut(s)	234
BsnI	GGCC	3 cut(s)	74, 216, 525
Bsp119I	TTCGAA	1 cut(s)	346
Bsp1286I	GDGCHC	4 cut(s)	332, 661, 747, 840
Bsp13I	TCCGGA	1 cut(s)	605
BspACI	CCGC	4 cut(s)	42, 93, 114, 213
BspANI	GGCC	3 cut(s)	74, 216, 525
BspCNI	CTCAG	5 cut(s)	238, 318, 487, 655, 826
BspEI	TCCGGA	1 cut(s)	605
BspFNI	CGCG	1 cut(s)	213
BspHI	TCATGA	1 cut(s)	778
BspLI	GGNNCC	1 cut(s)	276
BspMI	ACCTGC	1 cut(s)	586
BspPI	GGATC	6 cut(s)	150, 274, 290, 371, 608, 616
BspQI	GCTCTTC	2 cut(s)	56, 245
BspT104I	TTCGAA	1 cut(s)	346
BspT107I	GGYRCC	1 cut(s)	274
BspTI	CTTAAG	1 cut(s)	284
BsrBI	CCGCTC	1 cut(s)	95
BsrFI	RCCGGY	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	750
BssAI	RCCGGY	1 cut(s)	277
BssECI	CCNNGG	2 cut(s)	738, 811
BssNI	GRCGYC	1 cut(s)	275
BssT1I	CCWWGG	1 cut(s)	811
Bst4CI	ACNGT	1 cut(s)	256
Bst6I	CTCTTC	3 cut(s)	56, 68, 245
BstACI	GRCGYC	1 cut(s)	275
BstAFI	CTTAAG	1 cut(s)	284
BstBI	TTCGAA	1 cut(s)	346
BstC8I	GCNNGC	3 cut(s)	97, 593, 722
BstDEI	CTNAG	7 cut(s)	225, 326, 474, 547, 638, 663, 834
BstDSI	CCRYGG	1 cut(s)	738
BstF5I	GGATG	5 cut(s)	268, 484, 593, 624, 734
BstFNI	CGCG	1 cut(s)	213
BstH2I	RGCGCY	3 cut(s)	158, 278, 362
BstHHI	GCGC	6 cut(s)	157, 277, 361, 649, 900, 920
BstMAI	GTCTC	1 cut(s)	234
BstMWI	GCNNNNNNNGC	2 cut(s)	497, 509
BstSLI	GKGCMC	1 cut(s)	661
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	5 cut(s)	32, 302, 487, 509, 902
BstX2I	RGATCY	2 cut(s)	295, 613
BstYI	RGATCY	2 cut(s)	295, 613
BsuRI	GGCC	3 cut(s)	74, 216, 525
BtgI	CCRYGG	1 cut(s)	738
BtsCI	GGATG	5 cut(s)	268, 484, 593, 624, 734
BtsI	GCAGTG	1 cut(s)	831
BtsIMutI	CAGTG	1 cut(s)	831
BveI	ACCTGC	1 cut(s)	586
Cac8I	GCNNGC	3 cut(s)	97, 593, 722
CaiI	CAGNNNCTG	2 cut(s)	232, 503
CciI	TCATGA	1 cut(s)	778
CfoI	GCGC	6 cut(s)	157, 277, 361, 649, 900, 920
Cfr10I	RCCGGY	1 cut(s)	277
Cfr13I	GGNCC	2 cut(s)	73, 194
Csp6I	GTAC	3 cut(s)	160, 382, 753
CviAII	CATG	2 cut(s)	779, 921
CviQI	GTAC	3 cut(s)	160, 382, 753
DdeI	CTNAG	7 cut(s)	225, 326, 474, 547, 638, 663, 834
DinI	GGCGCC	1 cut(s)	276
DraI	TTTAAA	1 cut(s)	537
EaeI	YGGCCR	1 cut(s)	214
Eam1104I	CTCTTC	3 cut(s)	56, 68, 245
EarI	CTCTTC	3 cut(s)	56, 68, 245
EciI	GGCGGA	2 cut(s)	31, 103
Ecl136II	GAGCTC	2 cut(s)	330, 838
Eco130I	CCWWGG	1 cut(s)	811
Eco147I	AGGCCT	1 cut(s)	525
Eco24I	GRGCYC	2 cut(s)	332, 840
Eco47I	GGWCC	1 cut(s)	194
Eco53kI	GAGCTC	2 cut(s)	330, 838
Eco57I	CTGAAG	2 cut(s)	513, 741
EcoICRI	GAGCTC	2 cut(s)	330, 838
EcoT14I	CCWWGG	1 cut(s)	811
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	332, 840
EgeI	GGCGCC	1 cut(s)	276
EheI	GGCGCC	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	811
FaeI	CATG	2 cut(s)	782, 924
FaiI	YATR	8 cut(s)	434, 453, 620, 678, 780, 797, 846, 922
FalI	AAGNNNNNCTT	2 cut(s)	530, 562
FatI	CATG	2 cut(s)	778, 920
Fnu4HI	GCNGC	6 cut(s)	21, 214, 291, 498, 501, 916
FokI	GGATG	5 cut(s)	275, 491, 600, 611, 721
FriOI	GRGCYC	2 cut(s)	332, 840
Fsp4HI	GCNGC	6 cut(s)	21, 214, 291, 498, 501, 916
FspBI	CTAG	1 cut(s)	174
FspI	TGCGCA	2 cut(s)	899, 919
GlaI	GCGC	6 cut(s)	156, 276, 360, 648, 899, 919
GluI	GCNGC	6 cut(s)	21, 214, 291, 498, 501, 916
GsuI	CTGGAG	1 cut(s)	733
HaeII	RGCGCY	3 cut(s)	158, 278, 362
HaeIII	GGCC	3 cut(s)	74, 216, 525
HapII	CCGG	3 cut(s)	278, 467, 606
HhaI	GCGC	6 cut(s)	157, 277, 361, 649, 900, 920
Hin1I	GRCGYC	1 cut(s)	275
Hin1II	CATG	2 cut(s)	782, 924
Hin6I	GCGC	6 cut(s)	155, 275, 359, 647, 898, 918
HinP1I	GCGC	6 cut(s)	155, 275, 359, 647, 898, 918
HinfI	GANTC	5 cut(s)	89, 122, 130, 348, 667
HpaII	CCGG	3 cut(s)	278, 467, 606
HphI	GGTGA	2 cut(s)	98, 450
Hpy166II	GTNNAC	1 cut(s)	659
Hpy188III	TCNNGA	5 cut(s)	67, 374, 476, 606, 779
Hpy8I	GTNNAC	1 cut(s)	659
Hpy99I	CGWCG	1 cut(s)	81
HpyAV	CCTTC	3 cut(s)	253, 515, 886
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4V	TGCA	5 cut(s)	4, 632, 659, 707, 875
HpyF10VI	GCNNNNNNNGC	2 cut(s)	497, 509
HpyF3I	CTNAG	7 cut(s)	225, 326, 474, 547, 638, 663, 834
Hsp92I	GRCGYC	1 cut(s)	275
Hsp92II	CATG	2 cut(s)	782, 924
HspAI	GCGC	6 cut(s)	155, 275, 359, 647, 898, 918
KasI	GGCGCC	1 cut(s)	274
Kpn2I	TCCGGA	1 cut(s)	605
LguI	GCTCTTC	2 cut(s)	56, 245
LmnI	GCTCC	1 cut(s)	509
Lsp1109I	GCAGC	5 cut(s)	32, 302, 487, 509, 902
LweI	GCATC	5 cut(s)	13, 457, 578, 673, 740
MaeI	CTAG	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	829
MbiI	CCGCTC	1 cut(s)	95
MboII	GAAGA	7 cut(s)	43, 46, 55, 178, 232, 683, 897
MflI	RGATCY	2 cut(s)	295, 613
MhlI	GDGCHC	4 cut(s)	332, 661, 747, 840
MluCI	AATT	3 cut(s)	392, 415, 854
Mly113I	GGCGCC	1 cut(s)	275
MmeI	TCCRAC	2 cut(s)	59, 487
MnlI	CCTC	9 cut(s)	121, 127, 141, 232, 349, 454, 536, 814, 844
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	605
MseI	TTAA	3 cut(s)	285, 536, 563
MspA1I	CMGCKG	1 cut(s)	500
MspCI	CTTAAG	1 cut(s)	284
MspI	CCGG	3 cut(s)	278, 467, 606
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	2 cut(s)	497, 509
NarI	GGCGCC	1 cut(s)	275
NlaIII	CATG	2 cut(s)	782, 924
NlaIV	GGNNCC	1 cut(s)	276
NsbI	TGCGCA	2 cut(s)	899, 919
NsiI	ATGCAT	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	346
PagI	TCATGA	1 cut(s)	778
PceI	AGGCCT	1 cut(s)	525
PciSI	GCTCTTC	2 cut(s)	56, 245
PfeI	GAWTC	5 cut(s)	89, 122, 130, 348, 667
PkrI	GCNGC	6 cut(s)	22, 215, 292, 499, 502, 917
PluTI	GGCGCC	1 cut(s)	278
Psp124BI	GAGCTC	2 cut(s)	332, 840
PspN4I	GGNNCC	1 cut(s)	276
PspPI	GGNCC	2 cut(s)	73, 194
PstNI	CAGNNNCTG	2 cut(s)	232, 503
PsuI	RGATCY	2 cut(s)	295, 613
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	3 cut(s)	161, 383, 754
RsaNI	GTAC	3 cut(s)	160, 382, 753
SacI	GAGCTC	2 cut(s)	332, 840
SapI	GCTCTTC	2 cut(s)	56, 245
SaqAI	TTAA	3 cut(s)	285, 536, 563
SatI	GCNGC	6 cut(s)	21, 214, 291, 498, 501, 916
Sau96I	GGNCC	2 cut(s)	73, 194
ScaI	AGTACT	1 cut(s)	754
SduI	GDGCHC	4 cut(s)	332, 661, 747, 840
SfaNI	GCATC	5 cut(s)	13, 457, 578, 673, 740
SfoI	GGCGCC	1 cut(s)	276
SfuI	TTCGAA	1 cut(s)	346
SgrAI	CRCCGGYG	1 cut(s)	277
SinI	GGWCC	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	3 cut(s)	392, 415, 854
SseBI	AGGCCT	1 cut(s)	525
SsiI	CCGC	4 cut(s)	42, 93, 114, 213
SspDI	GGCGCC	1 cut(s)	274
SspMI	CTAG	1 cut(s)	174
SstI	GAGCTC	2 cut(s)	332, 840
StuI	AGGCCT	1 cut(s)	525
StyI	CCWWGG	1 cut(s)	811
TaaI	ACNGT	1 cut(s)	256
TaqI	TCGA	2 cut(s)	243, 346
TasI	AATT	3 cut(s)	392, 415, 854
TatI	WGTACW	1 cut(s)	752
TauI	GCSGC	1 cut(s)	216
TfiI	GAWTC	5 cut(s)	89, 122, 130, 348, 667
Tru1I	TTAA	3 cut(s)	285, 536, 563
Tru9I	TTAA	3 cut(s)	285, 536, 563
TscAI	CASTG	1 cut(s)	831
TseI	GCWGC	5 cut(s)	20, 290, 497, 500, 915
TspDTI	ATGAA	3 cut(s)	25, 767, 905
TspGWI	ACGGA	3 cut(s)	369, 617, 727
TspRI	CASTG	1 cut(s)	831
Vha464I	CTTAAG	1 cut(s)	284
VneI	GTGCAC	1 cut(s)	657
VpaK11BI	GGWCC	1 cut(s)	194
XapI	RAATTY	2 cut(s)	415, 854
XspI	CTAG	1 cut(s)	174
ZrmI	AGTACT	1 cut(s)	754
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.